Initializing AMReX (24.01-25-gd121723c7491)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-25-gd121723c7491) initialized Starting run at 06:40:22 UTC on 2024-01-24. Successfully read inputs file ... Castro git describe: 24.01-17-g29c5f4d16 AMReX git describe: 24.01-25-gd121723c7 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013781458 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369563034 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336348609 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333575283 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335673014 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338723226 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.364616863 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313648374 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309940349 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310759037 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310696248 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007552703 seconds Ending run at 06:40:26 UTC on 2024-01-24. Run time = 3.526740665 Run time without initialization = 3.336856702 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.525 ... 3.526 ... 3.527 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2806 2.3743 2.4282 68.85% Gravity::make_radial_gravity() 21 0.3003 0.3147 0.3333 9.45% check_for_negative_density() 10 0.02488 0.08131 0.1784 5.06% Castro::initData() 1 0.04718 0.08694 0.1262 3.58% Castro::estTimeStep() 21 0.02361 0.06786 0.1113 3.16% FabArray::ParallelCopy_finish() 41 0.04207 0.05403 0.09796 2.78% amrex::Copy() 193 0.06136 0.07805 0.09232 2.62% FabArray::setVal() 143 0.0524 0.06766 0.07634 2.16% Castro::reset_internal_energy(Fab) 1008 0.04653 0.04757 0.04927 1.40% FabArray::ParallelCopy_nowait() 41 0.03371 0.04057 0.04328 1.23% Castro::normalize_species() 62 0.04109 0.0422 0.04324 1.23% FillPatchIterator::Initialize 41 0.02692 0.03182 0.03468 0.98% StateData::FillBoundary(geom) 41 0.02929 0.03218 0.03386 0.96% Gravity::interpolate_monopole_grav() 21 0.02792 0.02924 0.03009 0.85% Castro::construct_new_gravity_source() 10 0.02112 0.02401 0.02627 0.74% Castro::computeTemp() 63 0.01743 0.01936 0.02047 0.58% Castro::initialize_do_advance() 10 0.01173 0.01572 0.01761 0.50% Castro::initialize_advance() 10 0.003832 0.01062 0.01465 0.42% MultiFab::contains_nan() 20 0.009643 0.01114 0.01416 0.40% FabArray::Saxpy() 20 0.01031 0.01239 0.01301 0.37% VisMF::Write(FabArray) 2 0.008733 0.009449 0.01273 0.36% FabArray::setDomainBndry() 41 0.008068 0.01013 0.01237 0.35% Amr::writePlotFile() 2 0.006794 0.009322 0.01008 0.29% Castro::construct_old_gravity_source() 10 0.006447 0.009092 0.009941 0.28% Castro::initMFs() 1 0.006224 0.006687 0.007603 0.22% Castro::construct_new_source() 50 0.005488 0.006267 0.006702 0.19% Castro::enforce_min_density() 62 0.005678 0.005939 0.006066 0.17% StateData::define() 4 0.005115 0.005421 0.005884 0.17% main() 1 0.003458 0.00428 0.00504 0.14% Castro::swap_state_time_levels() 10 0.002471 0.004211 0.004918 0.14% Gravity::get_new_grav_vector() 11 0.002795 0.003459 0.003927 0.11% Gravity::get_old_grav_vector() 10 0.001472 0.001878 0.002378 0.07% Amr::coarseTimeStep() 10 0.00141 0.001821 0.002336 0.07% Castro::buildMetrics() 1 0.001441 0.001538 0.00169 0.05% Castro::finalize_do_advance() 10 0.0005301 0.001138 0.001426 0.04% AmrLevel::FillPatch() 41 0.0007887 0.0008964 0.0009989 0.03% Amr::InitAmr() 1 0.0003539 0.0003935 0.0005581 0.02% Amr::timeStep() 10 0.0001484 0.0002023 0.0004056 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002643 0.0002824 0.0003034 0.01% DistributionMapping::LeastUsedCPUs() 1 7.476e-06 0.0001743 0.000216 0.01% StateDataPhysBCFunct::() 41 8.518e-05 0.0001167 0.0001837 0.01% Castro::do_advance_ctu() 10 0.0001093 0.0001469 0.0001777 0.01% FillPatchIterator::FillFromLevel0() 41 9.788e-05 0.0001244 0.0001699 0.00% Castro::clean_state() 62 0.0001325 0.0001492 0.0001648 0.00% Castro::finalize_advance() 10 6.814e-05 9.287e-05 0.0001247 0.00% Castro::enforce_consistent_e() 1 7.745e-05 8.747e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 7.073e-05 8.581e-05 0.0001031 0.00% FillPatchSingleLevel 41 6.141e-05 7.649e-05 0.0001018 0.00% Castro::do_old_sources() 10 6.291e-05 8.509e-05 9.939e-05 0.00% Castro::Castro() 1 5.333e-05 7.391e-05 9.497e-05 0.00% Castro::construct_old_source() 50 5.545e-05 6.897e-05 8.428e-05 0.00% Castro::do_new_sources() 10 4.959e-05 6.28e-05 7.844e-05 0.00% Amr::FinalizeInit() 1 3.401e-06 1.311e-05 7.488e-05 0.00% Amr::writeSmallPlotFile() 1 3.301e-05 4.555e-05 7.224e-05 0.00% Castro::advance() 10 3.663e-05 4.795e-05 6.453e-05 0.00% Castro::subcycle_advance_ctu() 10 3.981e-05 4.953e-05 6.368e-05 0.00% Castro::apply_source_to_state() 20 3.435e-05 4.629e-05 5.847e-05 0.00% FabArrayBase::getCPC() 41 4.339e-05 4.933e-05 5.588e-05 0.00% Castro::construct_old_gravity() 10 3.278e-05 3.97e-05 5.141e-05 0.00% Castro::construct_new_gravity() 10 3.096e-05 3.609e-05 4.172e-05 0.00% FabArrayBase::CPC::define() 2 2.002e-05 2.503e-05 2.991e-05 0.00% Castro::enforce_speed_limit() 62 2.298e-05 2.567e-05 2.853e-05 0.00% Castro::expand_state() 10 2.058e-05 2.507e-05 2.849e-05 0.00% Amr::defBaseLevel() 1 1.709e-05 1.968e-05 2.576e-05 0.00% Castro::check_for_nan() 20 2.021e-05 2.23e-05 2.391e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.335e-05 1.66e-05 2.089e-05 0.00% Castro::post_init() 1 1.436e-05 1.6e-05 1.895e-05 0.00% Castro::post_timestep() 10 1.234e-05 1.49e-05 1.703e-05 0.00% Gravity::set_mass_offset() 10 7.762e-06 9.91e-06 1.461e-05 0.00% Gravity::swapTimeLevels() 10 7.621e-06 9.765e-06 1.311e-05 0.00% Amr::initSubcycle() 1 9.351e-06 1.041e-05 1.147e-05 0.00% Castro::create_source_corrector() 10 6.88e-06 8.098e-06 9.959e-06 0.00% Castro::FluxRegCrseInit 10 5.498e-06 7.381e-06 9.162e-06 0.00% Castro::retry_advance_ctu() 10 6.395e-06 6.947e-06 8.058e-06 0.00% Castro::computeNewDt() 9 7.023e-06 7.668e-06 8.044e-06 0.00% Amr::init() 1 2.205e-06 2.986e-06 7.31e-06 0.00% Castro::post_regrid() 1 2.028e-06 3.223e-06 7.255e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.78e-06 4.455e-06 6.134e-06 0.00% Amr::InitializeInit() 1 1.79e-06 2.358e-06 5.307e-06 0.00% Castro::computeInitialDt() 2 2.728e-06 3.582e-06 4.333e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.53e-06 3.157e-06 0.00% Amr::initialInit() 1 1.261e-06 1.662e-06 2.054e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.871e-07 1.038e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.525 3.526 3.527 100.00% Amr::coarseTimeStep() 10 3.324 3.324 3.324 94.26% Amr::timeStep() 10 3.311 3.312 3.312 93.92% Castro::advance() 10 3.296 3.296 3.296 93.47% Castro::subcycle_advance_ctu() 10 3.217 3.224 3.243 91.94% Castro::do_advance_ctu() 10 3.217 3.224 3.243 91.94% Castro::construct_ctu_hydro_source() 10 2.473 2.476 2.479 70.30% Gravity::make_radial_gravity() 21 0.3167 0.3303 0.3461 9.81% AmrLevel::FillPatch() 41 0.1852 0.201 0.2192 6.22% Castro::construct_old_gravity() 10 0.1917 0.2044 0.2185 6.20% Gravity::get_old_grav_vector() 10 0.1907 0.2036 0.218 6.18% Gravity::get_new_grav_vector() 11 0.2062 0.2085 0.2101 5.96% FillPatchIterator::Initialize 41 0.1516 0.1692 0.1967 5.58% Amr::init() 1 0.1892 0.1893 0.1894 5.37% Castro::construct_new_gravity() 10 0.1822 0.1835 0.1846 5.23% check_for_negative_density() 10 0.02488 0.08131 0.1784 5.06% Amr::initialInit() 1 0.1752 0.1756 0.1759 4.99% Castro::initialize_do_advance() 10 0.1622 0.1679 0.1746 4.95% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1273 0.1617 4.58% FillPatchSingleLevel 41 0.1148 0.1271 0.1615 4.58% Amr::InitializeInit() 1 0.06685 0.1071 0.147 4.17% Amr::defBaseLevel() 1 0.06685 0.1071 0.147 4.17% FabArray::ParallelCopy() 41 0.08269 0.09476 0.1319 3.74% Castro::initData() 1 0.05132 0.09089 0.1295 3.67% Castro::expand_state() 10 0.1087 0.1149 0.125 3.55% Castro::clean_state() 62 0.1114 0.1146 0.1176 3.33% Castro::estTimeStep() 21 0.02361 0.06786 0.1113 3.16% Amr::FinalizeInit() 1 0.02826 0.06848 0.1088 3.09% FabArray::ParallelCopy_finish() 41 0.04207 0.05403 0.09796 2.78% Castro::do_old_sources() 10 0.08957 0.09486 0.09794 2.78% amrex::Copy() 193 0.06136 0.07805 0.09232 2.62% Castro::computeInitialDt() 2 0.002292 0.04218 0.08245 2.34% FabArray::setVal() 143 0.0524 0.06766 0.07634 2.16% Castro::initialize_advance() 10 0.04942 0.06905 0.07561 2.14% Castro::computeTemp() 63 0.06424 0.06721 0.06949 1.97% Castro::do_new_sources() 10 0.05875 0.06343 0.06819 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04681 0.04785 0.04955 1.40% Castro::reset_internal_energy(Fab) 1008 0.04653 0.04757 0.04927 1.40% FabArray::ParallelCopy_nowait() 41 0.0338 0.04064 0.04335 1.23% Castro::normalize_species() 62 0.04109 0.0422 0.04324 1.23% StateDataPhysBCFunct::() 41 0.02939 0.03229 0.03395 0.96% StateData::FillBoundary(geom) 41 0.02929 0.03218 0.03386 0.96% Castro::construct_new_source() 50 0.02661 0.03028 0.03269 0.93% Gravity::interpolate_monopole_grav() 21 0.02792 0.02924 0.03009 0.85% Castro::post_init() 1 0.02534 0.02592 0.02631 0.75% Castro::construct_new_gravity_source() 10 0.02112 0.02401 0.02627 0.74% Castro::finalize_do_advance() 10 0.01292 0.01744 0.02227 0.63% Amr::writePlotFile() 2 0.02111 0.02141 0.02175 0.62% Castro::post_timestep() 10 0.015 0.01552 0.01593 0.45% Castro::check_for_nan() 20 0.009664 0.01116 0.01419 0.40% MultiFab::contains_nan() 20 0.009643 0.01114 0.01416 0.40% Castro::apply_source_to_state() 20 0.01037 0.01244 0.01305 0.37% FabArray::Saxpy() 20 0.01031 0.01239 0.01301 0.37% VisMF::Write(FabArray) 2 0.008733 0.009449 0.01273 0.36% FabArray::setDomainBndry() 41 0.008068 0.01013 0.01237 0.35% Castro::Castro() 1 0.009966 0.01056 0.01143 0.32% Castro::construct_old_source() 50 0.006508 0.009161 0.01003 0.28% Castro::construct_old_gravity_source() 10 0.006447 0.009092 0.009941 0.28% Castro::computeNewDt() 9 0.009382 0.009389 0.009397 0.27% Castro::initMFs() 1 0.006224 0.006687 0.007603 0.22% Castro::enforce_min_density() 62 0.005678 0.005939 0.006066 0.17% AmrLevel::AmrLevel(dm) 1 0.005131 0.005437 0.005903 0.17% StateData::define() 4 0.005115 0.005421 0.005884 0.17% Castro::swap_state_time_levels() 10 0.002471 0.004211 0.004918 0.14% Castro::finalize_advance() 10 0.003215 0.003325 0.003467 0.10% Castro::post_regrid() 1 0.00146 0.001637 0.001956 0.06% Castro::buildMetrics() 1 0.001555 0.001671 0.001847 0.05% Amr::InitAmr() 1 0.0003641 0.0004039 0.0005696 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.28e-05 0.0001797 0.0002225 0.01% DistributionMapping::LeastUsedCPUs() 1 7.476e-06 0.0001743 0.000216 0.01% Castro::enforce_consistent_e() 1 7.745e-05 8.747e-05 0.0001045 0.00% FabArrayBase::getCPC() 41 6.499e-05 7.436e-05 8.559e-05 0.00% Amr::writeSmallPlotFile() 1 3.301e-05 4.555e-05 7.224e-05 0.00% FabArrayBase::CPC::define() 2 2.002e-05 2.503e-05 2.991e-05 0.00% Castro::enforce_speed_limit() 62 2.298e-05 2.567e-05 2.853e-05 0.00% Gravity::set_mass_offset() 10 7.762e-06 9.91e-06 1.461e-05 0.00% Gravity::swapTimeLevels() 10 7.621e-06 9.765e-06 1.311e-05 0.00% Amr::initSubcycle() 1 9.351e-06 1.041e-05 1.147e-05 0.00% Castro::create_source_corrector() 10 6.88e-06 8.098e-06 9.959e-06 0.00% Castro::FluxRegCrseInit 10 5.498e-06 7.381e-06 9.162e-06 0.00% Castro::retry_advance_ctu() 10 6.395e-06 6.947e-06 8.058e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.53e-06 3.157e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.871e-07 1.038e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 31 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-25-gd121723c7491) finalized