Initializing AMReX (24.01-29-gd5cc57909f51)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-29-gd5cc57909f51) initialized Starting run at 06:41:05 UTC on 2024-01-26. Successfully read inputs file ... Castro git describe: 24.01-18-g8f66f04f6 AMReX git describe: 24.01-29-gd5cc57909 Microphysics git describe: 24.01-9-ga4d7ab4d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012729265 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356581004 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342265143 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331185229 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328825218 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330184147 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.367727199 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312712658 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308519791 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309593952 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311368959 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007562588 seconds Ending run at 06:41:09 UTC on 2024-01-26. Run time = 3.518666437 Run time without initialization = 3.312385907 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.517 ... 3.518 ... 3.519 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3004 2.3637 2.4060 68.38% Gravity::make_radial_gravity() 21 0.2827 0.3039 0.3277 9.31% Castro::initData() 1 0.04717 0.08858 0.1412 4.01% Castro::estTimeStep() 21 0.03072 0.08439 0.1301 3.70% check_for_negative_density() 10 0.02369 0.06344 0.1296 3.68% FabArray::ParallelCopy_finish() 41 0.03878 0.05933 0.1102 3.13% amrex::Copy() 193 0.0615 0.0806 0.09751 2.77% FabArray::setVal() 143 0.05326 0.06802 0.07647 2.17% Castro::reset_internal_energy(Fab) 1008 0.04539 0.04734 0.04817 1.37% FabArray::ParallelCopy_nowait() 41 0.0333 0.04157 0.04424 1.26% Castro::normalize_species() 62 0.04087 0.0417 0.04244 1.21% FillPatchIterator::Initialize 41 0.0256 0.03287 0.03787 1.08% StateData::FillBoundary(geom) 41 0.0288 0.03303 0.03602 1.02% Gravity::interpolate_monopole_grav() 21 0.02718 0.029 0.02984 0.85% Castro::construct_new_gravity_source() 10 0.02174 0.02413 0.02542 0.72% Castro::computeTemp() 63 0.01871 0.01961 0.02036 0.58% Castro::initialize_do_advance() 10 0.01094 0.01689 0.01994 0.57% FabArray::setDomainBndry() 41 0.007137 0.01051 0.01578 0.45% MultiFab::contains_nan() 20 0.009568 0.0114 0.0145 0.41% Castro::initialize_advance() 10 0.003801 0.01062 0.01411 0.40% FabArray::Saxpy() 20 0.01055 0.01275 0.01407 0.40% VisMF::Write(FabArray) 2 0.008705 0.009161 0.01149 0.33% Castro::construct_old_gravity_source() 10 0.006477 0.009326 0.01026 0.29% Castro::initMFs() 1 0.006118 0.007246 0.01025 0.29% Amr::writePlotFile() 2 0.006307 0.008453 0.009796 0.28% StateData::define() 4 0.00515 0.005852 0.007921 0.23% Castro::construct_new_source() 50 0.005537 0.006353 0.00678 0.19% Castro::enforce_min_density() 62 0.005806 0.006097 0.006353 0.18% main() 1 0.003564 0.004434 0.005058 0.14% Castro::swap_state_time_levels() 10 0.003155 0.004112 0.004738 0.13% Gravity::get_new_grav_vector() 11 0.002731 0.00356 0.004016 0.11% Amr::coarseTimeStep() 10 0.001246 0.00176 0.002463 0.07% Gravity::get_old_grav_vector() 10 0.001473 0.001989 0.002306 0.07% Castro::buildMetrics() 1 0.001431 0.001643 0.00225 0.06% Castro::finalize_do_advance() 10 0.0005078 0.0009599 0.001154 0.03% AmrLevel::FillPatch() 41 0.0007208 0.0008785 0.001082 0.03% Amr::InitAmr() 1 0.0003503 0.0004416 0.0006527 0.02% Amr::timeStep() 10 0.0001358 0.0002147 0.0004124 0.01% DistributionMapping::LeastUsedCPUs() 1 6.839e-06 0.0002367 0.000329 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00028 0.0002884 0.0003037 0.01% StateDataPhysBCFunct::() 41 8.523e-05 0.0001176 0.0002114 0.01% Castro::clean_state() 62 0.0001408 0.0001496 0.0001681 0.00% Castro::do_advance_ctu() 10 0.0001056 0.0001324 0.0001615 0.00% FillPatchIterator::FillFromLevel0() 41 8.857e-05 0.0001135 0.0001482 0.00% Castro::finalize_advance() 10 6.554e-05 9.104e-05 0.0001141 0.00% Castro::enforce_consistent_e() 1 7.512e-05 8.96e-05 0.0001116 0.00% Castro::do_old_sources() 10 6.773e-05 9.048e-05 0.000107 0.00% FabArray::ParallelCopy() 41 7.518e-05 8.418e-05 9.689e-05 0.00% Castro::do_new_sources() 10 5.461e-05 6.917e-05 9.541e-05 0.00% Castro::Castro() 1 6.619e-05 7.58e-05 8.711e-05 0.00% FillPatchSingleLevel 41 5.541e-05 7.119e-05 8.578e-05 0.00% Castro::construct_old_source() 50 4.252e-05 6.45e-05 7.732e-05 0.00% Amr::writeSmallPlotFile() 1 3.803e-05 5.222e-05 7.706e-05 0.00% Amr::FinalizeInit() 1 4.028e-06 1.221e-05 6.352e-05 0.00% Castro::construct_old_gravity() 10 2.929e-05 4.141e-05 6.152e-05 0.00% Castro::advance() 10 3.527e-05 4.633e-05 6.136e-05 0.00% Castro::subcycle_advance_ctu() 10 3.43e-05 4.712e-05 5.723e-05 0.00% FabArrayBase::getCPC() 41 3.74e-05 4.627e-05 5.309e-05 0.00% Castro::apply_source_to_state() 20 3.393e-05 4.47e-05 4.986e-05 0.00% Castro::construct_new_gravity() 10 2.875e-05 3.547e-05 4.334e-05 0.00% Castro::expand_state() 10 1.81e-05 2.624e-05 4.091e-05 0.00% Amr::defBaseLevel() 1 1.758e-05 2.608e-05 3.401e-05 0.00% Castro::check_for_nan() 20 2.202e-05 2.503e-05 3.085e-05 0.00% FabArrayBase::CPC::define() 2 2.231e-05 2.566e-05 2.997e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.471e-05 2.115e-05 2.985e-05 0.00% Castro::enforce_speed_limit() 62 2.182e-05 2.586e-05 2.781e-05 0.00% Amr::initSubcycle() 1 9.502e-06 1.223e-05 1.803e-05 0.00% Gravity::swapTimeLevels() 10 5.494e-06 1.029e-05 1.731e-05 0.00% Castro::post_timestep() 10 1.079e-05 1.384e-05 1.71e-05 0.00% Castro::post_init() 1 1.403e-05 1.533e-05 1.633e-05 0.00% Castro::create_source_corrector() 10 5.673e-06 8.664e-06 1.365e-05 0.00% Gravity::set_mass_offset() 10 8.427e-06 1.074e-05 1.342e-05 0.00% Castro::FluxRegCrseInit 10 6.141e-06 7.498e-06 8.989e-06 0.00% Amr::initialInit() 1 1.436e-06 2.533e-06 8.967e-06 0.00% Castro::computeNewDt() 9 7.331e-06 8.008e-06 8.557e-06 0.00% Castro::retry_advance_ctu() 10 6.278e-06 6.812e-06 8.033e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.551e-06 4.678e-06 6.258e-06 0.00% Castro::post_regrid() 1 2.093e-06 3.499e-06 4.627e-06 0.00% Amr::InitializeInit() 1 1.847e-06 2.403e-06 4.421e-06 0.00% Castro::computeInitialDt() 2 2.594e-06 3.713e-06 4.254e-06 0.00% Castro::FluxRegFineAdd() 10 1.865e-06 2.265e-06 3.255e-06 0.00% Amr::init() 1 1.742e-06 2.253e-06 2.635e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.085e-06 1.415e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.517 3.518 3.519 100.00% Amr::coarseTimeStep() 10 3.3 3.3 3.3 93.78% Amr::timeStep() 10 3.287 3.288 3.288 93.45% Castro::advance() 10 3.272 3.272 3.272 92.99% Castro::subcycle_advance_ctu() 10 3.194 3.199 3.218 91.44% Castro::do_advance_ctu() 10 3.194 3.199 3.218 91.44% Castro::construct_ctu_hydro_source() 10 2.443 2.447 2.45 69.64% Gravity::make_radial_gravity() 21 0.2987 0.3197 0.34 9.66% AmrLevel::FillPatch() 41 0.1969 0.2111 0.2292 6.51% Castro::construct_old_gravity() 10 0.1778 0.1962 0.2139 6.08% Gravity::get_old_grav_vector() 10 0.1767 0.1954 0.2134 6.06% Gravity::get_new_grav_vector() 11 0.2055 0.2076 0.2088 5.93% FillPatchIterator::Initialize 41 0.1623 0.1778 0.2063 5.86% Amr::init() 1 0.2054 0.2057 0.2058 5.85% Amr::initialInit() 1 0.1927 0.1931 0.1934 5.50% Castro::initialize_do_advance() 10 0.1678 0.1763 0.19 5.40% Castro::construct_new_gravity() 10 0.1843 0.1854 0.1861 5.29% FillPatchIterator::FillFromLevel0() 41 0.1194 0.1344 0.1727 4.91% FillPatchSingleLevel 41 0.1193 0.1343 0.1726 4.90% Amr::InitializeInit() 1 0.06644 0.1097 0.1672 4.75% Amr::defBaseLevel() 1 0.06644 0.1097 0.1672 4.75% Castro::initData() 1 0.05093 0.09236 0.1449 4.12% FabArray::ParallelCopy() 41 0.08316 0.1011 0.1436 4.08% Castro::expand_state() 10 0.1131 0.1219 0.1329 3.78% Castro::estTimeStep() 21 0.03072 0.08439 0.1301 3.70% check_for_negative_density() 10 0.02369 0.06344 0.1296 3.68% Amr::FinalizeInit() 1 0.02555 0.08337 0.1267 3.60% Castro::clean_state() 62 0.1111 0.1143 0.116 3.30% FabArray::ParallelCopy_finish() 41 0.03878 0.05933 0.1102 3.13% Castro::computeInitialDt() 2 0.002084 0.05975 0.1031 2.93% Castro::do_old_sources() 10 0.09321 0.09729 0.1001 2.84% amrex::Copy() 193 0.0615 0.0806 0.09751 2.77% FabArray::setVal() 143 0.05326 0.06802 0.07647 2.17% Castro::initialize_advance() 10 0.05054 0.06942 0.07461 2.12% Castro::computeTemp() 63 0.06438 0.06724 0.06881 1.96% Castro::do_new_sources() 10 0.05979 0.0635 0.06748 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04567 0.04763 0.04846 1.38% Castro::reset_internal_energy(Fab) 1008 0.04539 0.04734 0.04817 1.37% FabArray::ParallelCopy_nowait() 41 0.03336 0.04164 0.04431 1.26% Castro::normalize_species() 62 0.04087 0.0417 0.04244 1.21% StateDataPhysBCFunct::() 41 0.02889 0.03315 0.0361 1.03% StateData::FillBoundary(geom) 41 0.0288 0.03303 0.03602 1.02% Castro::construct_new_source() 50 0.02727 0.03049 0.03205 0.91% Gravity::interpolate_monopole_grav() 21 0.02718 0.029 0.02984 0.85% Castro::construct_new_gravity_source() 10 0.02174 0.02413 0.02542 0.72% Castro::post_init() 1 0.02269 0.02314 0.02347 0.67% Amr::writePlotFile() 2 0.02002 0.02023 0.02056 0.58% Castro::finalize_do_advance() 10 0.01176 0.01657 0.0201 0.57% Castro::post_timestep() 10 0.01507 0.0157 0.01623 0.46% FabArray::setDomainBndry() 41 0.007137 0.01051 0.01578 0.45% Castro::check_for_nan() 20 0.009599 0.01143 0.01452 0.41% MultiFab::contains_nan() 20 0.009568 0.0114 0.0145 0.41% Castro::Castro() 1 0.009973 0.01124 0.01431 0.41% Castro::apply_source_to_state() 20 0.01058 0.01279 0.01412 0.40% FabArray::Saxpy() 20 0.01055 0.01275 0.01407 0.40% VisMF::Write(FabArray) 2 0.008705 0.009161 0.01149 0.33% Castro::construct_old_source() 50 0.006519 0.00939 0.01033 0.29% Castro::construct_old_gravity_source() 10 0.006477 0.009326 0.01026 0.29% Castro::initMFs() 1 0.006118 0.007246 0.01025 0.29% Castro::computeNewDt() 9 0.009037 0.009043 0.009048 0.26% AmrLevel::AmrLevel(dm) 1 0.005166 0.005874 0.007946 0.23% StateData::define() 4 0.00515 0.005852 0.007921 0.23% Castro::enforce_min_density() 62 0.005806 0.006097 0.006353 0.18% Castro::swap_state_time_levels() 10 0.003155 0.004112 0.004738 0.13% Castro::finalize_advance() 10 0.003142 0.003379 0.003569 0.10% Castro::buildMetrics() 1 0.001546 0.001786 0.00245 0.07% Castro::post_regrid() 1 0.001337 0.001601 0.002136 0.06% Amr::InitAmr() 1 0.0003614 0.0004538 0.0006707 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.227e-05 0.0002425 0.0003362 0.01% DistributionMapping::LeastUsedCPUs() 1 6.839e-06 0.0002367 0.000329 0.01% Castro::enforce_consistent_e() 1 7.512e-05 8.96e-05 0.0001116 0.00% Amr::writeSmallPlotFile() 1 3.803e-05 5.222e-05 7.706e-05 0.00% FabArrayBase::getCPC() 41 6.156e-05 7.194e-05 7.58e-05 0.00% FabArrayBase::CPC::define() 2 2.231e-05 2.566e-05 2.997e-05 0.00% Castro::enforce_speed_limit() 62 2.182e-05 2.586e-05 2.781e-05 0.00% Amr::initSubcycle() 1 9.502e-06 1.223e-05 1.803e-05 0.00% Gravity::swapTimeLevels() 10 5.494e-06 1.029e-05 1.731e-05 0.00% Castro::create_source_corrector() 10 5.673e-06 8.664e-06 1.365e-05 0.00% Gravity::set_mass_offset() 10 8.427e-06 1.074e-05 1.342e-05 0.00% Castro::FluxRegCrseInit 10 6.141e-06 7.498e-06 8.989e-06 0.00% Castro::retry_advance_ctu() 10 6.278e-06 6.812e-06 8.033e-06 0.00% Castro::FluxRegFineAdd() 10 1.865e-06 2.265e-06 3.255e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.085e-06 1.415e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-29-gd5cc57909f51) finalized