Initializing AMReX (24.01-31-gab99ea69089f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-31-gab99ea69089f) initialized Starting run at 00:41:12 UTC on 2024-01-29. Successfully read inputs file ... Castro git describe: 24.01-23-g2607ee52c AMReX git describe: 24.01-31-gab99ea690 Microphysics git describe: 24.01-15-gcdb8b373 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013299779 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362476759 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357795995 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32948544 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329120366 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354535241 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342348802 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30986172 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309738173 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31107491 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312882785 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007612547 seconds Ending run at 00:41:15 UTC on 2024-01-29. Run time = 3.557936961 Run time without initialization = 3.332708482 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.556 ... 3.557 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2987 2.3628 2.4243 68.14% Gravity::make_radial_gravity() 21 0.2895 0.2977 0.309 8.69% check_for_negative_density() 10 0.01943 0.08573 0.1518 4.27% Castro::initData() 1 0.04737 0.0864 0.1287 3.62% Castro::estTimeStep() 21 0.02424 0.07999 0.1276 3.59% FabArray::ParallelCopy_finish() 41 0.03715 0.05787 0.0905 2.54% amrex::Copy() 193 0.06539 0.07644 0.08616 2.42% FabArray::setVal() 143 0.06395 0.07179 0.08426 2.37% Castro::reset_internal_energy(Fab) 1008 0.04379 0.04714 0.04933 1.39% Castro::normalize_species() 62 0.04129 0.0425 0.04367 1.23% FabArray::ParallelCopy_nowait() 41 0.03555 0.04057 0.04256 1.20% FillPatchIterator::Initialize 41 0.02815 0.032 0.03596 1.01% StateData::FillBoundary(geom) 41 0.02881 0.03137 0.03537 0.99% Amr::InitAmr() 1 0.0003581 0.00446 0.03303 0.93% DistributionMapping::LeastUsedCPUs() 1 8.957e-06 0.02863 0.03274 0.92% Gravity::interpolate_monopole_grav() 21 0.02805 0.02933 0.03097 0.87% Castro::construct_new_gravity_source() 10 0.02127 0.02486 0.0305 0.86% Castro::initialize_do_advance() 10 0.01228 0.01726 0.02117 0.60% Castro::computeTemp() 63 0.01734 0.01943 0.0204 0.57% FabArray::Saxpy() 20 0.01089 0.01311 0.01466 0.41% Castro::initialize_advance() 10 0.004122 0.01024 0.01385 0.39% VisMF::Write(FabArray) 2 0.008842 0.009392 0.01244 0.35% MultiFab::contains_nan() 20 0.01059 0.0114 0.01211 0.34% Castro::construct_old_gravity_source() 10 0.007119 0.00959 0.0103 0.29% FabArray::setDomainBndry() 41 0.007439 0.009241 0.01029 0.29% Amr::writePlotFile() 2 0.006698 0.009154 0.00962 0.27% Castro::initMFs() 1 0.006295 0.006787 0.007993 0.22% Castro::enforce_min_density() 62 0.007065 0.007304 0.007562 0.21% Castro::construct_new_source() 50 0.005846 0.006287 0.006693 0.19% StateData::define() 4 0.005248 0.005464 0.006022 0.17% main() 1 0.003451 0.004273 0.005101 0.14% Amr::coarseTimeStep() 10 0.001803 0.003185 0.004525 0.13% Castro::swap_state_time_levels() 10 0.002529 0.004194 0.004454 0.13% Gravity::get_new_grav_vector() 11 0.002941 0.00347 0.003932 0.11% Gravity::get_old_grav_vector() 10 0.001635 0.001921 0.002171 0.06% Castro::buildMetrics() 1 0.001473 0.001582 0.001713 0.05% Castro::finalize_do_advance() 10 0.0005546 0.001105 0.001393 0.04% AmrLevel::FillPatch() 41 0.00084 0.0009441 0.001 0.03% Amr::timeStep() 10 0.0001401 0.0001996 0.0004239 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002711 0.0002893 0.0003324 0.01% Castro::clean_state() 62 0.000139 0.0001533 0.0001807 0.01% Castro::do_advance_ctu() 10 0.0001136 0.0001377 0.0001756 0.00% FillPatchIterator::FillFromLevel0() 41 9.904e-05 0.000122 0.0001717 0.00% StateDataPhysBCFunct::() 41 8.893e-05 0.0001159 0.0001493 0.00% Castro::finalize_advance() 10 7.315e-05 0.0001003 0.0001289 0.00% Castro::do_old_sources() 10 6.632e-05 9.044e-05 0.0001107 0.00% Castro::Castro() 1 5.873e-05 7.805e-05 0.0001025 0.00% Castro::enforce_consistent_e() 1 7.322e-05 8.64e-05 9.35e-05 0.00% FabArray::ParallelCopy() 41 7.096e-05 7.833e-05 9.097e-05 0.00% Castro::construct_old_source() 50 5.635e-05 7.306e-05 9.08e-05 0.00% Amr::FinalizeInit() 1 3.258e-06 1.419e-05 8.341e-05 0.00% FillPatchSingleLevel 41 6.445e-05 7.08e-05 8.191e-05 0.00% Castro::do_new_sources() 10 5.128e-05 6.338e-05 8.146e-05 0.00% FabArrayBase::getCPC() 41 4.201e-05 5.274e-05 6.417e-05 0.00% Amr::writeSmallPlotFile() 1 3.158e-05 4.565e-05 5.86e-05 0.00% Castro::apply_source_to_state() 20 3.901e-05 4.874e-05 5.629e-05 0.00% Castro::advance() 10 3.882e-05 4.871e-05 5.405e-05 0.00% Castro::subcycle_advance_ctu() 10 3.76e-05 4.713e-05 5.33e-05 0.00% Castro::construct_new_gravity() 10 3.189e-05 3.61e-05 4.706e-05 0.00% Castro::retry_advance_ctu() 10 5.949e-06 1.133e-05 4.234e-05 0.00% Castro::construct_old_gravity() 10 3.161e-05 3.596e-05 4.165e-05 0.00% Castro::expand_state() 10 1.92e-05 2.492e-05 3.639e-05 0.00% Castro::enforce_speed_limit() 62 2.388e-05 2.795e-05 3.575e-05 0.00% FabArrayBase::CPC::define() 2 2.048e-05 2.566e-05 3.265e-05 0.00% Castro::check_for_nan() 20 2.025e-05 2.318e-05 2.675e-05 0.00% Gravity::set_mass_offset() 10 8.585e-06 1.254e-05 2.452e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.729e-05 2.002e-05 2.38e-05 0.00% Amr::defBaseLevel() 1 1.597e-05 1.972e-05 2.372e-05 0.00% Castro::post_timestep() 10 1.198e-05 1.515e-05 2.211e-05 0.00% Castro::post_init() 1 1.342e-05 1.717e-05 2.08e-05 0.00% Amr::initSubcycle() 1 9.848e-06 1.08e-05 1.156e-05 0.00% Gravity::swapTimeLevels() 10 9.039e-06 1.009e-05 1.155e-05 0.00% Castro::create_source_corrector() 10 7.129e-06 7.96e-06 1.016e-05 0.00% Castro::FluxRegCrseInit 10 6.202e-06 7.879e-06 9.786e-06 0.00% Castro::computeNewDt() 9 7.275e-06 7.945e-06 8.838e-06 0.00% Castro::post_regrid() 1 2.006e-06 3.228e-06 7.027e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.615e-06 4.382e-06 5.712e-06 0.00% Castro::computeInitialDt() 2 2.646e-06 3.685e-06 5.409e-06 0.00% Amr::InitializeInit() 1 1.794e-06 2.726e-06 4.967e-06 0.00% Amr::init() 1 2.011e-06 2.466e-06 3.315e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.433e-06 3.041e-06 0.00% Amr::initialInit() 1 1.205e-06 1.69e-06 2.096e-06 0.00% DistributionMapping::Distribute() 1 8.05e-07 9.361e-07 1.017e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.556 3.557 3.558 100.00% Amr::coarseTimeStep() 10 3.32 3.32 3.32 93.31% Amr::timeStep() 10 3.305 3.307 3.308 92.97% Castro::advance() 10 3.29 3.291 3.292 92.51% Castro::subcycle_advance_ctu() 10 3.204 3.214 3.224 90.60% Castro::do_advance_ctu() 10 3.204 3.214 3.224 90.60% Castro::construct_ctu_hydro_source() 10 2.465 2.47 2.473 69.50% Gravity::make_radial_gravity() 21 0.3056 0.3134 0.3219 9.05% Amr::init() 1 0.192 0.2206 0.2247 6.32% Gravity::get_new_grav_vector() 11 0.2133 0.2156 0.2168 6.09% AmrLevel::FillPatch() 41 0.1742 0.2018 0.2156 6.06% Amr::initialInit() 1 0.1785 0.2071 0.2113 5.94% FillPatchIterator::Initialize 41 0.1457 0.1715 0.1919 5.39% Castro::construct_new_gravity() 10 0.1886 0.1906 0.1918 5.39% Castro::construct_old_gravity() 10 0.1783 0.1841 0.1918 5.39% Gravity::get_old_grav_vector() 10 0.1776 0.1833 0.1912 5.37% Amr::InitializeInit() 1 0.07135 0.1352 0.1825 5.13% Amr::defBaseLevel() 1 0.07135 0.1352 0.1825 5.13% Castro::initialize_do_advance() 10 0.1537 0.1692 0.1797 5.05% FillPatchIterator::FillFromLevel0() 41 0.1096 0.1303 0.1554 4.37% FillPatchSingleLevel 41 0.1095 0.1302 0.1552 4.36% check_for_negative_density() 10 0.01943 0.08573 0.1518 4.27% Castro::initData() 1 0.05131 0.0903 0.1322 3.71% Castro::estTimeStep() 21 0.02424 0.07999 0.1276 3.59% FabArray::ParallelCopy() 41 0.07986 0.0986 0.1262 3.55% Castro::expand_state() 10 0.09638 0.1148 0.1253 3.52% Castro::clean_state() 62 0.1104 0.1159 0.1202 3.38% Amr::FinalizeInit() 1 0.02862 0.07183 0.1114 3.13% Castro::do_old_sources() 10 0.08672 0.09113 0.0949 2.67% FabArray::ParallelCopy_finish() 41 0.03715 0.05787 0.0905 2.54% amrex::Copy() 193 0.06539 0.07644 0.08616 2.42% Castro::computeInitialDt() 2 0.00227 0.0455 0.08515 2.39% FabArray::setVal() 143 0.06395 0.07179 0.08426 2.37% Castro::initialize_advance() 10 0.06256 0.07319 0.08299 2.33% Castro::do_new_sources() 10 0.05878 0.06641 0.07997 2.25% Castro::computeTemp() 63 0.06143 0.06685 0.06966 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04408 0.04743 0.04962 1.39% Castro::reset_internal_energy(Fab) 1008 0.04379 0.04714 0.04933 1.39% Castro::normalize_species() 62 0.04129 0.0425 0.04367 1.23% FabArray::ParallelCopy_nowait() 41 0.03565 0.04065 0.04263 1.20% Castro::construct_new_source() 50 0.02712 0.03114 0.03709 1.04% StateDataPhysBCFunct::() 41 0.02892 0.03149 0.03546 1.00% StateData::FillBoundary(geom) 41 0.02881 0.03137 0.03537 0.99% Castro::finalize_do_advance() 10 0.01273 0.02657 0.03499 0.98% Amr::InitAmr() 1 0.0003682 0.004471 0.03304 0.93% DistributionMapping::SFCProcessorMapDoIt() 1 1.341e-05 0.02864 0.03275 0.92% DistributionMapping::LeastUsedCPUs() 1 8.957e-06 0.02863 0.03274 0.92% Gravity::interpolate_monopole_grav() 21 0.02805 0.02933 0.03097 0.87% Castro::construct_new_gravity_source() 10 0.02127 0.02486 0.0305 0.86% Castro::post_init() 1 0.02553 0.02593 0.02612 0.73% Amr::writePlotFile() 2 0.02112 0.02122 0.0214 0.60% Castro::post_timestep() 10 0.01506 0.01573 0.01619 0.46% Castro::apply_source_to_state() 20 0.01094 0.01316 0.0147 0.41% FabArray::Saxpy() 20 0.01089 0.01311 0.01466 0.41% VisMF::Write(FabArray) 2 0.008842 0.009392 0.01244 0.35% Castro::check_for_nan() 20 0.01062 0.01142 0.01213 0.34% MultiFab::contains_nan() 20 0.01059 0.0114 0.01211 0.34% Castro::Castro() 1 0.01028 0.01079 0.01161 0.33% Castro::construct_old_source() 50 0.00719 0.009663 0.01038 0.29% Castro::construct_old_gravity_source() 10 0.007119 0.00959 0.0103 0.29% FabArray::setDomainBndry() 41 0.007439 0.009241 0.01029 0.29% Castro::computeNewDt() 9 0.009031 0.009038 0.009051 0.25% Castro::initMFs() 1 0.006295 0.006787 0.007993 0.22% Castro::enforce_min_density() 62 0.007065 0.007304 0.007562 0.21% AmrLevel::AmrLevel(dm) 1 0.005271 0.005484 0.006046 0.17% StateData::define() 4 0.005248 0.005464 0.006022 0.17% Castro::finalize_advance() 10 0.003 0.003852 0.005256 0.15% Castro::swap_state_time_levels() 10 0.002529 0.004194 0.004454 0.13% Castro::post_regrid() 1 0.001503 0.001636 0.002022 0.06% Castro::buildMetrics() 1 0.001584 0.001715 0.001877 0.05% FabArrayBase::getCPC() 41 6.423e-05 7.84e-05 9.57e-05 0.00% Castro::enforce_consistent_e() 1 7.322e-05 8.64e-05 9.35e-05 0.00% Amr::writeSmallPlotFile() 1 3.158e-05 4.565e-05 5.86e-05 0.00% Castro::retry_advance_ctu() 10 5.949e-06 1.133e-05 4.234e-05 0.00% Castro::enforce_speed_limit() 62 2.388e-05 2.795e-05 3.575e-05 0.00% FabArrayBase::CPC::define() 2 2.048e-05 2.566e-05 3.265e-05 0.00% Gravity::set_mass_offset() 10 8.585e-06 1.254e-05 2.452e-05 0.00% Amr::initSubcycle() 1 9.848e-06 1.08e-05 1.156e-05 0.00% Gravity::swapTimeLevels() 10 9.039e-06 1.009e-05 1.155e-05 0.00% Castro::create_source_corrector() 10 7.129e-06 7.96e-06 1.016e-05 0.00% Castro::FluxRegCrseInit 10 6.202e-06 7.879e-06 9.786e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.433e-06 3.041e-06 0.00% DistributionMapping::Distribute() 1 8.05e-07 9.361e-07 1.017e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-31-gab99ea69089f) finalized