Initializing AMReX (24.01-31-gab99ea69089f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-31-gab99ea69089f) initialized Starting run at 06:32:23 UTC on 2024-01-29. Successfully read inputs file ... Castro git describe: 24.01-24-g6d8abef7c AMReX git describe: 24.01-31-gab99ea690 Microphysics git describe: 24.01-15-gcdb8b373 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014122614 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358976816 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336556152 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335668975 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.353084311 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332419357 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.380072175 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311354727 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308259231 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308977175 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31138771 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007445592 seconds Ending run at 06:32:27 UTC on 2024-01-29. Run time = 3.542389612 Run time without initialization = 3.34991598 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3016 2.3652 2.4041 67.87% Gravity::make_radial_gravity() 21 0.2862 0.2946 0.3067 8.66% check_for_negative_density() 10 0.04994 0.0914 0.1604 4.53% Castro::initData() 1 0.04707 0.08695 0.1255 3.54% Castro::estTimeStep() 21 0.02861 0.0709 0.115 3.25% FabArray::setVal() 143 0.06472 0.07696 0.09376 2.65% FabArray::ParallelCopy_finish() 41 0.03489 0.06833 0.09047 2.55% amrex::Copy() 193 0.06237 0.07827 0.09018 2.55% Castro::reset_internal_energy(Fab) 1008 0.04354 0.04698 0.04861 1.37% FabArray::ParallelCopy_nowait() 41 0.03327 0.0415 0.04502 1.27% Castro::normalize_species() 62 0.04133 0.04237 0.04458 1.26% FillPatchIterator::Initialize 41 0.02693 0.03422 0.03996 1.13% StateData::FillBoundary(geom) 41 0.03056 0.03292 0.0352 0.99% Gravity::interpolate_monopole_grav() 21 0.02767 0.02946 0.03032 0.86% Castro::construct_new_gravity_source() 10 0.02144 0.02336 0.02439 0.69% Castro::initialize_do_advance() 10 0.01181 0.01846 0.02368 0.67% Castro::computeTemp() 63 0.0171 0.01891 0.02035 0.57% Castro::initialize_advance() 10 0.01056 0.01256 0.01549 0.44% FabArray::Saxpy() 20 0.01099 0.01237 0.01383 0.39% FabArray::setDomainBndry() 41 0.007208 0.009945 0.01286 0.36% VisMF::Write(FabArray) 2 0.008802 0.009275 0.01165 0.33% MultiFab::contains_nan() 20 0.009838 0.01051 0.01132 0.32% Castro::construct_old_gravity_source() 10 0.006412 0.009066 0.0103 0.29% Amr::writePlotFile() 2 0.007254 0.009178 0.00996 0.28% Castro::initMFs() 1 0.006157 0.007254 0.009882 0.28% StateData::define() 4 0.005082 0.005937 0.007817 0.22% Castro::construct_new_source() 50 0.005848 0.006415 0.007668 0.22% Castro::enforce_min_density() 62 0.005769 0.006067 0.006626 0.19% main() 1 0.003911 0.004576 0.005026 0.14% Castro::swap_state_time_levels() 10 0.003163 0.004153 0.004398 0.12% Gravity::get_new_grav_vector() 11 0.002738 0.003357 0.003768 0.11% Amr::coarseTimeStep() 10 0.0008738 0.001833 0.002544 0.07% Gravity::get_old_grav_vector() 10 0.001521 0.001963 0.002272 0.06% Castro::buildMetrics() 1 0.001446 0.001689 0.002226 0.06% Castro::finalize_do_advance() 10 0.0004927 0.0009904 0.00123 0.03% AmrLevel::FillPatch() 41 0.0007619 0.0009902 0.001156 0.03% Amr::InitAmr() 1 0.0003538 0.0004633 0.0008124 0.02% DistributionMapping::LeastUsedCPUs() 1 8.833e-06 0.0003957 0.0005134 0.01% Amr::timeStep() 10 0.000139 0.0002254 0.0004483 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002736 0.0002981 0.0003689 0.01% Castro::do_advance_ctu() 10 0.0001274 0.0001466 0.0002183 0.01% Castro::clean_state() 62 0.0001325 0.0001516 0.0001855 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001001 0.0001164 0.0001371 0.00% Castro::finalize_advance() 10 7.315e-05 9.16e-05 0.0001206 0.00% StateDataPhysBCFunct::() 41 9.207e-05 0.0001029 0.0001149 0.00% Castro::do_old_sources() 10 8.048e-05 8.78e-05 0.0001092 0.00% Castro::do_new_sources() 10 4.921e-05 7.136e-05 0.0001023 0.00% FabArray::ParallelCopy() 41 7.928e-05 8.778e-05 0.0001003 0.00% Castro::subcycle_advance_ctu() 10 4.693e-05 5.871e-05 9.615e-05 0.00% Castro::construct_old_source() 50 6.44e-05 7.248e-05 9.294e-05 0.00% Castro::enforce_consistent_e() 1 7.731e-05 8.67e-05 9.285e-05 0.00% Castro::Castro() 1 4.981e-05 6.867e-05 9.184e-05 0.00% Amr::FinalizeInit() 1 3.167e-06 1.509e-05 8.411e-05 0.00% Castro::advance() 10 4.179e-05 5.799e-05 7.895e-05 0.00% FillPatchSingleLevel 41 6.054e-05 6.846e-05 7.412e-05 0.00% Amr::writeSmallPlotFile() 1 3.174e-05 4.895e-05 6.664e-05 0.00% Castro::construct_old_gravity() 10 3.307e-05 4.373e-05 6.652e-05 0.00% FabArrayBase::getCPC() 41 3.846e-05 5.643e-05 6.447e-05 0.00% Castro::apply_source_to_state() 20 3.915e-05 4.731e-05 5.658e-05 0.00% Castro::construct_new_gravity() 10 3.308e-05 3.58e-05 4.021e-05 0.00% Castro::enforce_speed_limit() 62 2.562e-05 2.836e-05 3.442e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.589e-05 3.131e-05 0.00% Castro::expand_state() 10 2.069e-05 2.413e-05 2.888e-05 0.00% Gravity::set_mass_offset() 10 8.684e-06 1.296e-05 2.825e-05 0.00% Castro::check_for_nan() 20 2.223e-05 2.361e-05 2.684e-05 0.00% Amr::defBaseLevel() 1 1.645e-05 2.172e-05 2.627e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.711e-05 2.09e-05 2.361e-05 0.00% Castro::post_init() 1 1.479e-05 1.623e-05 1.822e-05 0.00% Castro::post_timestep() 10 1.154e-05 1.413e-05 1.783e-05 0.00% Amr::initSubcycle() 1 9.614e-06 1.198e-05 1.701e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.507e-06 5.52e-06 1.373e-05 0.00% Gravity::swapTimeLevels() 10 6.466e-06 1.016e-05 1.231e-05 0.00% Castro::computeNewDt() 9 7.747e-06 8.528e-06 1.043e-05 0.00% Castro::create_source_corrector() 10 7.818e-06 9.101e-06 1.032e-05 0.00% Castro::FluxRegCrseInit 10 6.942e-06 7.955e-06 9.361e-06 0.00% Castro::retry_advance_ctu() 10 5.566e-06 7.234e-06 8.157e-06 0.00% Amr::InitializeInit() 1 1.554e-06 2.436e-06 6.27e-06 0.00% Castro::computeInitialDt() 2 2.809e-06 3.658e-06 4.596e-06 0.00% Castro::post_regrid() 1 1.593e-06 2.958e-06 4.51e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.309e-06 2.863e-06 0.00% Amr::init() 1 2.009e-06 2.454e-06 2.695e-06 0.00% Amr::initialInit() 1 1.323e-06 1.713e-06 1.994e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.152e-06 1.578e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.338 3.338 3.338 94.22% Amr::timeStep() 10 3.325 3.325 3.326 93.90% Castro::advance() 10 3.309 3.31 3.31 93.43% Castro::subcycle_advance_ctu() 10 3.213 3.225 3.236 91.34% Castro::do_advance_ctu() 10 3.213 3.225 3.236 91.34% Castro::construct_ctu_hydro_source() 10 2.473 2.477 2.483 70.10% Gravity::make_radial_gravity() 21 0.3028 0.3111 0.3205 9.05% AmrLevel::FillPatch() 41 0.1878 0.2182 0.2412 6.81% Gravity::get_new_grav_vector() 11 0.2058 0.2072 0.2088 5.89% FillPatchIterator::Initialize 41 0.1606 0.1874 0.2082 5.88% Castro::construct_old_gravity() 10 0.1835 0.1889 0.1972 5.57% Castro::initialize_do_advance() 10 0.1648 0.1834 0.1971 5.56% Gravity::get_old_grav_vector() 10 0.1825 0.1882 0.1967 5.55% Amr::init() 1 0.1914 0.1918 0.192 5.42% Castro::construct_new_gravity() 10 0.1822 0.1839 0.1849 5.22% Amr::initialInit() 1 0.1771 0.1781 0.179 5.05% FillPatchIterator::FillFromLevel0() 41 0.1146 0.1432 0.1604 4.53% check_for_negative_density() 10 0.04994 0.0914 0.1604 4.53% FillPatchSingleLevel 41 0.1145 0.1431 0.1603 4.53% Amr::InitializeInit() 1 0.06653 0.1081 0.1509 4.26% Amr::defBaseLevel() 1 0.06653 0.1081 0.1509 4.26% Castro::expand_state() 10 0.1087 0.1287 0.1452 4.10% Castro::initData() 1 0.05078 0.09071 0.129 3.64% FabArray::ParallelCopy() 41 0.07913 0.11 0.1268 3.58% Castro::clean_state() 62 0.1078 0.1139 0.1167 3.30% Castro::estTimeStep() 21 0.02861 0.0709 0.115 3.25% Amr::FinalizeInit() 1 0.02707 0.06995 0.1116 3.15% Castro::do_old_sources() 10 0.09187 0.09662 0.1004 2.83% FabArray::setVal() 143 0.06472 0.07696 0.09376 2.65% Castro::initialize_advance() 10 0.07055 0.08063 0.09332 2.63% FabArray::ParallelCopy_finish() 41 0.03489 0.06833 0.09047 2.55% amrex::Copy() 193 0.06237 0.07827 0.09018 2.55% Castro::computeInitialDt() 2 0.002312 0.04531 0.08697 2.46% Castro::computeTemp() 63 0.06092 0.06618 0.06917 1.95% Castro::do_new_sources() 10 0.05917 0.06246 0.06682 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04381 0.04728 0.04889 1.38% Castro::reset_internal_energy(Fab) 1008 0.04354 0.04698 0.04861 1.37% FabArray::ParallelCopy_nowait() 41 0.03334 0.04158 0.04509 1.27% Castro::normalize_species() 62 0.04133 0.04237 0.04458 1.26% StateDataPhysBCFunct::() 41 0.03067 0.03302 0.0353 1.00% StateData::FillBoundary(geom) 41 0.03056 0.03292 0.0352 0.99% Castro::construct_new_source() 50 0.02729 0.02977 0.03091 0.87% Gravity::interpolate_monopole_grav() 21 0.02767 0.02946 0.03032 0.86% Castro::post_init() 1 0.0237 0.02435 0.02509 0.71% Castro::construct_new_gravity_source() 10 0.02144 0.02336 0.02439 0.69% Castro::finalize_do_advance() 10 0.01236 0.01749 0.0219 0.62% Amr::writePlotFile() 2 0.02052 0.0213 0.02183 0.62% Castro::post_timestep() 10 0.01507 0.01559 0.0165 0.47% Castro::Castro() 1 0.009767 0.01102 0.0139 0.39% Castro::apply_source_to_state() 20 0.01104 0.01242 0.01389 0.39% FabArray::Saxpy() 20 0.01099 0.01237 0.01383 0.39% FabArray::setDomainBndry() 41 0.007208 0.009945 0.01286 0.36% VisMF::Write(FabArray) 2 0.008802 0.009275 0.01165 0.33% Castro::check_for_nan() 20 0.009861 0.01054 0.01134 0.32% MultiFab::contains_nan() 20 0.009838 0.01051 0.01132 0.32% Castro::construct_old_source() 50 0.00648 0.009139 0.0104 0.29% Castro::construct_old_gravity_source() 10 0.006412 0.009066 0.0103 0.29% Castro::initMFs() 1 0.006157 0.007254 0.009882 0.28% Castro::computeNewDt() 9 0.009104 0.009111 0.009116 0.26% AmrLevel::AmrLevel(dm) 1 0.005102 0.005958 0.00784 0.22% StateData::define() 4 0.005082 0.005937 0.007817 0.22% Castro::enforce_min_density() 62 0.005769 0.006067 0.006626 0.19% Castro::swap_state_time_levels() 10 0.003163 0.004153 0.004398 0.12% Castro::finalize_advance() 10 0.003191 0.003314 0.00348 0.10% Castro::buildMetrics() 1 0.001557 0.001835 0.00243 0.07% Castro::post_regrid() 1 0.001491 0.001567 0.001619 0.05% Amr::InitAmr() 1 0.0003646 0.0004753 0.0008294 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.478e-05 0.0004024 0.00052 0.01% DistributionMapping::LeastUsedCPUs() 1 8.833e-06 0.0003957 0.0005134 0.01% Castro::enforce_consistent_e() 1 7.731e-05 8.67e-05 9.285e-05 0.00% FabArrayBase::getCPC() 41 6.115e-05 8.232e-05 9.26e-05 0.00% Amr::writeSmallPlotFile() 1 3.174e-05 4.895e-05 6.664e-05 0.00% Castro::enforce_speed_limit() 62 2.562e-05 2.836e-05 3.442e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.589e-05 3.131e-05 0.00% Gravity::set_mass_offset() 10 8.684e-06 1.296e-05 2.825e-05 0.00% Amr::initSubcycle() 1 9.614e-06 1.198e-05 1.701e-05 0.00% Gravity::swapTimeLevels() 10 6.466e-06 1.016e-05 1.231e-05 0.00% Castro::create_source_corrector() 10 7.818e-06 9.101e-06 1.032e-05 0.00% Castro::FluxRegCrseInit 10 6.942e-06 7.955e-06 9.361e-06 0.00% Castro::retry_advance_ctu() 10 5.566e-06 7.234e-06 8.157e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.309e-06 2.863e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.152e-06 1.578e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 39 B 79 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-31-gab99ea69089f) finalized