Initializing AMReX (24.01-36-g09fc44a69d2a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-36-g09fc44a69d2a) initialized Starting run at 06:34:06 UTC on 2024-01-31. Successfully read inputs file ... Castro git describe: 24.01-24-g6d8abef7c AMReX git describe: 24.01-36-g09fc44a69 Microphysics git describe: 24.01-19-g6d5a4e1a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016484092 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36016195 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.346783608 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327923014 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330222783 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.32911885 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358611957 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316568538 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.3112464 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309432637 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310745692 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007557854 seconds Ending run at 06:34:10 UTC on 2024-01-31. Run time = 3.509705849 Run time without initialization = 3.314082278 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.508 ... 3.509 ... 3.51 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2841 2.3634 2.4033 68.47% Gravity::make_radial_gravity() 21 0.302 0.3095 0.3276 9.34% check_for_negative_density() 10 0.02821 0.07229 0.1529 4.36% Castro::initData() 1 0.04892 0.09624 0.1196 3.41% Castro::estTimeStep() 21 0.02413 0.05024 0.1035 2.95% FabArray::ParallelCopy_finish() 41 0.0365 0.05982 0.09962 2.84% amrex::Copy() 193 0.06387 0.08012 0.09659 2.75% FabArray::setVal() 143 0.06128 0.0703 0.07849 2.24% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04825 0.05031 1.43% Castro::normalize_species() 62 0.04161 0.04252 0.04358 1.24% FabArray::ParallelCopy_nowait() 41 0.03385 0.04014 0.04319 1.23% FillPatchIterator::Initialize 41 0.02692 0.0318 0.03449 0.98% StateData::FillBoundary(geom) 41 0.02955 0.03191 0.03401 0.97% Gravity::interpolate_monopole_grav() 21 0.02798 0.02956 0.0307 0.87% Castro::construct_new_gravity_source() 10 0.02127 0.02341 0.02563 0.73% Castro::computeTemp() 63 0.01938 0.02006 0.02072 0.59% Castro::initialize_do_advance() 10 0.01178 0.01675 0.01803 0.51% Castro::initialize_advance() 10 0.008947 0.01221 0.01557 0.44% FabArray::Saxpy() 20 0.01041 0.01245 0.01379 0.39% VisMF::Write(FabArray) 2 0.008705 0.009594 0.01322 0.38% MultiFab::contains_nan() 20 0.009709 0.01067 0.0124 0.35% FabArray::setDomainBndry() 41 0.006762 0.00934 0.01174 0.33% Amr::writePlotFile() 2 0.008816 0.01077 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.006418 0.009326 0.0103 0.29% Castro::initMFs() 1 0.006141 0.007378 0.009892 0.28% StateData::define() 4 0.005151 0.006028 0.007937 0.23% Castro::construct_new_source() 50 0.005621 0.00644 0.006826 0.19% Castro::enforce_min_density() 62 0.005796 0.006091 0.006607 0.19% main() 1 0.003601 0.004427 0.004917 0.14% Castro::swap_state_time_levels() 10 0.00243 0.004297 0.004885 0.14% Gravity::get_new_grav_vector() 11 0.002788 0.003565 0.003839 0.11% Gravity::get_old_grav_vector() 10 0.001569 0.001973 0.002384 0.07% Amr::coarseTimeStep() 10 0.001114 0.001822 0.002358 0.07% Castro::buildMetrics() 1 0.001442 0.001715 0.002287 0.07% Castro::finalize_do_advance() 10 0.0006094 0.001138 0.001362 0.04% AmrLevel::FillPatch() 41 0.0007718 0.0008643 0.001052 0.03% Amr::InitAmr() 1 0.000356 0.0004521 0.0006469 0.02% Amr::timeStep() 10 0.0001472 0.0002015 0.0003915 0.01% DistributionMapping::LeastUsedCPUs() 1 6.886e-06 0.0002249 0.0003227 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002864 0.0002911 0.000298 0.01% Castro::do_advance_ctu() 10 0.0001037 0.0001288 0.0001775 0.01% Castro::clean_state() 62 0.0001418 0.0001527 0.0001685 0.00% StateDataPhysBCFunct::() 41 9.459e-05 0.0001109 0.0001378 0.00% Castro::enforce_consistent_e() 1 7.813e-05 0.0001041 0.0001373 0.00% Castro::finalize_advance() 10 7.365e-05 9.316e-05 0.0001166 0.00% FillPatchIterator::FillFromLevel0() 41 9.158e-05 0.0001032 0.0001138 0.00% Castro::do_old_sources() 10 6.756e-05 8.836e-05 0.0001117 0.00% Castro::construct_old_source() 50 5.604e-05 7.325e-05 9.529e-05 0.00% FabArray::ParallelCopy() 41 7.076e-05 8.108e-05 9.294e-05 0.00% Castro::Castro() 1 5.747e-05 6.57e-05 8.648e-05 0.00% Castro::do_new_sources() 10 5.271e-05 6.537e-05 8.268e-05 0.00% FillPatchSingleLevel 41 5.922e-05 6.91e-05 8.033e-05 0.00% Amr::FinalizeInit() 1 4.632e-06 1.416e-05 7.645e-05 0.00% FabArrayBase::getCPC() 41 3.575e-05 4.731e-05 7.223e-05 0.00% Castro::advance() 10 3.878e-05 4.828e-05 6.653e-05 0.00% Amr::writeSmallPlotFile() 1 3.103e-05 4.649e-05 5.81e-05 0.00% Castro::subcycle_advance_ctu() 10 3.611e-05 4.486e-05 5.362e-05 0.00% Castro::apply_source_to_state() 20 3.684e-05 4.28e-05 5.106e-05 0.00% Castro::construct_old_gravity() 10 3.238e-05 3.542e-05 3.906e-05 0.00% Castro::construct_new_gravity() 10 3.022e-05 3.33e-05 3.758e-05 0.00% FabArrayBase::CPC::define() 2 1.958e-05 2.627e-05 3.526e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.463e-05 2.334e-05 3.455e-05 0.00% Castro::check_for_nan() 20 2.132e-05 2.481e-05 3.248e-05 0.00% Amr::defBaseLevel() 1 1.699e-05 2.201e-05 2.992e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 2.773e-05 2.98e-05 0.00% Castro::expand_state() 10 1.69e-05 2.198e-05 2.55e-05 0.00% Castro::post_init() 1 1.401e-05 1.736e-05 2.508e-05 0.00% Amr::initSubcycle() 1 9.317e-06 1.169e-05 1.657e-05 0.00% Castro::post_timestep() 10 1.221e-05 1.328e-05 1.648e-05 0.00% Gravity::set_mass_offset() 10 9.069e-06 1.017e-05 1.282e-05 0.00% Gravity::swapTimeLevels() 10 6.716e-06 1.026e-05 1.174e-05 0.00% Castro::create_source_corrector() 10 7.344e-06 8.801e-06 1.012e-05 0.00% Castro::computeNewDt() 9 8.411e-06 9.185e-06 1.007e-05 0.00% Castro::FluxRegCrseInit 10 6.171e-06 7.426e-06 9.545e-06 0.00% Amr::initialInit() 1 1.622e-06 2.726e-06 8.467e-06 0.00% Castro::retry_advance_ctu() 10 6.358e-06 7.266e-06 7.809e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.746e-06 5.299e-06 6.916e-06 0.00% Amr::InitializeInit() 1 1.853e-06 2.958e-06 5.544e-06 0.00% Castro::post_regrid() 1 3.456e-06 3.99e-06 5.26e-06 0.00% Castro::computeInitialDt() 2 3.985e-06 4.487e-06 4.963e-06 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.62e-06 3.531e-06 0.00% Amr::init() 1 2.32e-06 2.546e-06 2.912e-06 0.00% DistributionMapping::Distribute() 1 8.27e-07 1.111e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.508 3.509 3.51 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 94.07% Amr::timeStep() 10 3.289 3.289 3.29 93.74% Castro::advance() 10 3.273 3.273 3.274 93.27% Castro::subcycle_advance_ctu() 10 3.191 3.196 3.206 91.36% Castro::do_advance_ctu() 10 3.191 3.196 3.206 91.36% Castro::construct_ctu_hydro_source() 10 2.452 2.456 2.459 70.05% Gravity::make_radial_gravity() 21 0.3177 0.3257 0.3414 9.73% Gravity::get_new_grav_vector() 11 0.2183 0.2202 0.2225 6.34% AmrLevel::FillPatch() 41 0.1838 0.2042 0.2209 6.29% Castro::construct_old_gravity() 10 0.1857 0.1932 0.206 5.87% Gravity::get_old_grav_vector() 10 0.185 0.1926 0.2054 5.85% FillPatchIterator::Initialize 41 0.1537 0.1734 0.1972 5.62% Amr::init() 1 0.1948 0.195 0.1951 5.56% Castro::construct_new_gravity() 10 0.1836 0.1845 0.1856 5.29% Amr::initialInit() 1 0.1783 0.1798 0.1805 5.14% Castro::initialize_do_advance() 10 0.1582 0.1627 0.1702 4.85% FillPatchIterator::FillFromLevel0() 41 0.1105 0.1323 0.1635 4.66% FillPatchSingleLevel 41 0.1104 0.1322 0.1634 4.66% check_for_negative_density() 10 0.02821 0.07229 0.1529 4.36% Amr::InitializeInit() 1 0.06794 0.1178 0.1391 3.96% Amr::defBaseLevel() 1 0.06794 0.1178 0.1391 3.96% FabArray::ParallelCopy() 41 0.07781 0.1001 0.1337 3.81% Castro::initData() 1 0.05281 0.1004 0.1237 3.52% Castro::clean_state() 62 0.1136 0.1163 0.119 3.39% Castro::expand_state() 10 0.1025 0.1087 0.1156 3.30% Amr::FinalizeInit() 1 0.0403 0.06203 0.1104 3.14% Castro::do_old_sources() 10 0.09104 0.1001 0.1069 3.05% Castro::estTimeStep() 21 0.02413 0.05024 0.1035 2.95% FabArray::ParallelCopy_finish() 41 0.0365 0.05982 0.09962 2.84% amrex::Copy() 193 0.06387 0.08012 0.09659 2.75% Castro::initialize_advance() 10 0.06278 0.07407 0.07864 2.24% FabArray::setVal() 143 0.06128 0.0703 0.07849 2.24% Castro::computeInitialDt() 2 0.003051 0.02458 0.07438 2.12% Castro::computeTemp() 63 0.06687 0.06861 0.07132 2.03% Castro::do_new_sources() 10 0.05964 0.06284 0.06772 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04726 0.04855 0.0506 1.44% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04825 0.05031 1.43% Castro::normalize_species() 62 0.04161 0.04252 0.04358 1.24% FabArray::ParallelCopy_nowait() 41 0.03395 0.04021 0.04326 1.23% Castro::post_init() 1 0.0356 0.03679 0.03741 1.07% StateDataPhysBCFunct::() 41 0.02965 0.03202 0.03413 0.97% StateData::FillBoundary(geom) 41 0.02955 0.03191 0.03401 0.97% Castro::construct_new_source() 50 0.0269 0.02985 0.03245 0.92% Gravity::interpolate_monopole_grav() 21 0.02798 0.02956 0.0307 0.87% Castro::construct_new_gravity_source() 10 0.02127 0.02341 0.02563 0.73% Amr::writePlotFile() 2 0.02197 0.02285 0.0243 0.69% Castro::finalize_do_advance() 10 0.0128 0.01754 0.02139 0.61% Castro::post_timestep() 10 0.01537 0.01581 0.01638 0.47% Castro::Castro() 1 0.009617 0.01102 0.01407 0.40% Castro::apply_source_to_state() 20 0.01045 0.0125 0.01384 0.39% FabArray::Saxpy() 20 0.01041 0.01245 0.01379 0.39% VisMF::Write(FabArray) 2 0.008705 0.009594 0.01322 0.38% Castro::check_for_nan() 20 0.009733 0.0107 0.01242 0.35% MultiFab::contains_nan() 20 0.009709 0.01067 0.0124 0.35% FabArray::setDomainBndry() 41 0.006762 0.00934 0.01174 0.33% Castro::construct_old_source() 50 0.006474 0.0094 0.01038 0.30% Castro::construct_old_gravity_source() 10 0.006418 0.009326 0.0103 0.29% Castro::initMFs() 1 0.006141 0.007378 0.009892 0.28% Castro::computeNewDt() 9 0.009267 0.009272 0.009276 0.26% AmrLevel::AmrLevel(dm) 1 0.005165 0.006052 0.007962 0.23% StateData::define() 4 0.005151 0.006028 0.007937 0.23% Castro::enforce_min_density() 62 0.005796 0.006091 0.006607 0.19% Castro::swap_state_time_levels() 10 0.00243 0.004297 0.004885 0.14% Castro::finalize_advance() 10 0.003189 0.003393 0.003584 0.10% Castro::post_regrid() 1 0.001555 0.001966 0.002989 0.09% Castro::buildMetrics() 1 0.001555 0.001863 0.002496 0.07% Amr::InitAmr() 1 0.0003653 0.0004637 0.0006634 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.303e-05 0.0002313 0.0003305 0.01% DistributionMapping::LeastUsedCPUs() 1 6.886e-06 0.0002249 0.0003227 0.01% Castro::enforce_consistent_e() 1 7.813e-05 0.0001041 0.0001373 0.00% FabArrayBase::getCPC() 41 5.825e-05 7.358e-05 9.948e-05 0.00% Amr::writeSmallPlotFile() 1 3.103e-05 4.649e-05 5.81e-05 0.00% FabArrayBase::CPC::define() 2 1.958e-05 2.627e-05 3.526e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 2.773e-05 2.98e-05 0.00% Amr::initSubcycle() 1 9.317e-06 1.169e-05 1.657e-05 0.00% Gravity::set_mass_offset() 10 9.069e-06 1.017e-05 1.282e-05 0.00% Gravity::swapTimeLevels() 10 6.716e-06 1.026e-05 1.174e-05 0.00% Castro::create_source_corrector() 10 7.344e-06 8.801e-06 1.012e-05 0.00% Castro::FluxRegCrseInit 10 6.171e-06 7.426e-06 9.545e-06 0.00% Castro::retry_advance_ctu() 10 6.358e-06 7.266e-06 7.809e-06 0.00% Castro::FluxRegFineAdd() 10 1.96e-06 2.62e-06 3.531e-06 0.00% DistributionMapping::Distribute() 1 8.27e-07 1.111e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 40 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-36-g09fc44a69d2a) finalized