Initializing AMReX (24.01-38-g689144d157a0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.01-38-g689144d157a0) initialized Starting run at 06:33:57 UTC on 2024-02-01. Successfully read inputs file ... Castro git describe: 24.01-24-g6d8abef7c AMReX git describe: 24.01-38-g689144d15 Microphysics git describe: 24.01-19-g6d5a4e1a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013182339 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368954032 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342446302 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337716845 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.370909125 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359079852 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343819182 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312259832 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312808614 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312647328 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313244201 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007587005 seconds Ending run at 06:34:01 UTC on 2024-02-01. Run time = 3.568864104 Run time without initialization = 3.387299955 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.568 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3251 2.3762 2.4260 67.98% Gravity::make_radial_gravity() 21 0.3028 0.3064 0.3147 8.82% check_for_negative_density() 10 0.04425 0.09676 0.151 4.23% Castro::initData() 1 0.04762 0.08497 0.1204 3.37% Castro::estTimeStep() 21 0.02539 0.06928 0.1154 3.23% FabArray::setVal() 143 0.06648 0.07726 0.09041 2.53% amrex::Copy() 193 0.07827 0.08175 0.08917 2.50% FabArray::ParallelCopy_finish() 41 0.03198 0.0557 0.06643 1.86% Castro::reset_internal_energy(Fab) 1008 0.04621 0.04774 0.05001 1.40% Castro::normalize_species() 62 0.04103 0.0424 0.04427 1.24% FabArray::ParallelCopy_nowait() 41 0.0399 0.04232 0.04393 1.23% FillPatchIterator::Initialize 41 0.02748 0.03421 0.03799 1.06% StateData::FillBoundary(geom) 41 0.02869 0.032 0.03508 0.98% Gravity::interpolate_monopole_grav() 21 0.02882 0.03008 0.03271 0.92% Castro::construct_new_gravity_source() 10 0.02215 0.02584 0.02974 0.83% Castro::initialize_do_advance() 10 0.0151 0.01849 0.02212 0.62% Castro::computeTemp() 63 0.0188 0.01965 0.02085 0.58% MultiFab::contains_nan() 20 0.01107 0.01225 0.0167 0.47% FabArray::Saxpy() 20 0.01286 0.01368 0.01487 0.42% Castro::initialize_advance() 10 0.009504 0.01202 0.01479 0.41% FabArray::setDomainBndry() 41 0.00748 0.0119 0.01432 0.40% VisMF::Write(FabArray) 2 0.008933 0.00939 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.009765 0.01032 0.01063 0.30% Amr::writePlotFile() 2 0.006291 0.008488 0.008995 0.25% Castro::enforce_min_density() 62 0.007116 0.007435 0.007617 0.21% Castro::construct_new_source() 50 0.006215 0.006356 0.00653 0.18% Castro::initMFs() 1 0.00637 0.006414 0.006478 0.18% StateData::define() 4 0.00526 0.005285 0.005316 0.15% main() 1 0.003823 0.004664 0.005191 0.15% Castro::swap_state_time_levels() 10 0.003299 0.004433 0.004618 0.13% Gravity::get_new_grav_vector() 11 0.003047 0.003634 0.003992 0.11% Amr::coarseTimeStep() 10 0.001136 0.002485 0.003487 0.10% Gravity::get_old_grav_vector() 10 0.001467 0.002042 0.002479 0.07% Castro::finalize_do_advance() 10 0.001067 0.001284 0.001561 0.04% Castro::buildMetrics() 1 0.001475 0.0015 0.001536 0.04% AmrLevel::FillPatch() 41 0.0007835 0.0009679 0.001128 0.03% Amr::InitAmr() 1 0.0003571 0.0003763 0.0004967 0.01% Amr::timeStep() 10 0.0001523 0.0002093 0.0003765 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002744 0.0002853 0.000295 0.01% Castro::do_advance_ctu() 10 0.0001179 0.0001501 0.0001759 0.00% Castro::clean_state() 62 0.0001399 0.0001477 0.000157 0.00% DistributionMapping::LeastUsedCPUs() 1 7.686e-06 0.00012 0.0001378 0.00% StateDataPhysBCFunct::() 41 9.01e-05 0.0001064 0.0001333 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001047 0.0001113 0.0001278 0.00% Castro::finalize_advance() 10 7.371e-05 9.819e-05 0.0001144 0.00% Castro::enforce_consistent_e() 1 7.59e-05 9.295e-05 0.0001119 0.00% FabArray::ParallelCopy() 41 7.208e-05 8.453e-05 0.0001082 0.00% Castro::do_old_sources() 10 7.143e-05 9.353e-05 0.0001081 0.00% Amr::FinalizeInit() 1 3.564e-06 1.624e-05 9.664e-05 0.00% Castro::Castro() 1 6.904e-05 7.924e-05 9.221e-05 0.00% Castro::construct_old_source() 50 5.779e-05 7.135e-05 8.311e-05 0.00% Castro::construct_new_gravity() 10 3.066e-05 4.19e-05 8.299e-05 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 5.67e-05 7.954e-05 0.00% FillPatchSingleLevel 41 5.904e-05 6.861e-05 7.662e-05 0.00% Castro::do_new_sources() 10 5.928e-05 6.533e-05 7.375e-05 0.00% Castro::advance() 10 4.094e-05 5.032e-05 6.995e-05 0.00% Castro::check_for_nan() 20 2.104e-05 2.851e-05 6.959e-05 0.00% Castro::apply_source_to_state() 20 3.732e-05 4.709e-05 5.877e-05 0.00% Castro::subcycle_advance_ctu() 10 3.918e-05 4.684e-05 5.68e-05 0.00% FabArrayBase::getCPC() 41 4.478e-05 4.913e-05 5.624e-05 0.00% Castro::construct_old_gravity() 10 3.057e-05 3.697e-05 4.276e-05 0.00% Amr::defBaseLevel() 1 1.694e-05 2.862e-05 3.639e-05 0.00% FabArrayBase::CPC::define() 2 2.13e-05 2.635e-05 3.035e-05 0.00% Castro::enforce_speed_limit() 62 2.546e-05 2.734e-05 2.971e-05 0.00% Castro::expand_state() 10 1.984e-05 2.252e-05 2.625e-05 0.00% Castro::post_timestep() 10 1.173e-05 1.536e-05 2.237e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.417e-05 1.813e-05 2.14e-05 0.00% Castro::post_init() 1 1.43e-05 1.682e-05 2.046e-05 0.00% Gravity::set_mass_offset() 10 8.581e-06 1.091e-05 1.339e-05 0.00% Gravity::swapTimeLevels() 10 7.952e-06 9.568e-06 1.221e-05 0.00% Amr::initSubcycle() 1 9.875e-06 1.021e-05 1.146e-05 0.00% Castro::computeNewDt() 9 6.714e-06 8.552e-06 1.035e-05 0.00% Castro::create_source_corrector() 10 7.43e-06 8.52e-06 1.004e-05 0.00% Castro::FluxRegCrseInit 10 5.88e-06 7.759e-06 9.154e-06 0.00% Castro::retry_advance_ctu() 10 6.832e-06 7.383e-06 8.185e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.935e-06 4.679e-06 6.759e-06 0.00% Castro::post_regrid() 1 2.221e-06 3.793e-06 5.003e-06 0.00% Amr::InitializeInit() 1 1.695e-06 2.318e-06 4.82e-06 0.00% Castro::computeInitialDt() 2 3.397e-06 3.959e-06 4.813e-06 0.00% Amr::init() 1 2.299e-06 2.518e-06 3.055e-06 0.00% Castro::FluxRegFineAdd() 10 2.041e-06 2.399e-06 2.765e-06 0.00% Amr::initialInit() 1 1.509e-06 1.821e-06 2.378e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 9.254e-07 1.092e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.568 3.569 100.00% Amr::coarseTimeStep() 10 3.375 3.375 3.375 94.56% Amr::timeStep() 10 3.361 3.362 3.363 94.23% Castro::advance() 10 3.345 3.345 3.346 93.76% Castro::subcycle_advance_ctu() 10 3.255 3.264 3.272 91.67% Castro::do_advance_ctu() 10 3.254 3.264 3.272 91.67% Castro::construct_ctu_hydro_source() 10 2.492 2.495 2.499 70.01% Gravity::make_radial_gravity() 21 0.3207 0.3236 0.3298 9.24% AmrLevel::FillPatch() 41 0.194 0.2093 0.2264 6.34% Gravity::get_new_grav_vector() 11 0.2148 0.2202 0.2222 6.23% Castro::construct_new_gravity() 10 0.1926 0.1973 0.1988 5.57% Castro::construct_old_gravity() 10 0.1875 0.1916 0.1968 5.51% Gravity::get_old_grav_vector() 10 0.1869 0.1908 0.1962 5.50% FillPatchIterator::Initialize 41 0.159 0.1766 0.1923 5.39% Castro::initialize_do_advance() 10 0.1649 0.1766 0.1879 5.27% Amr::init() 1 0.1809 0.181 0.181 5.07% Amr::initialInit() 1 0.1675 0.1678 0.1679 4.71% check_for_negative_density() 10 0.04425 0.09676 0.151 4.23% FillPatchIterator::FillFromLevel0() 41 0.11 0.1305 0.1427 4.00% FillPatchSingleLevel 41 0.1099 0.1303 0.1426 4.00% Amr::InitializeInit() 1 0.06804 0.1057 0.1414 3.96% Amr::defBaseLevel() 1 0.06804 0.1057 0.1414 3.96% Castro::expand_state() 10 0.1073 0.1204 0.1337 3.75% Castro::initData() 1 0.05155 0.08914 0.1246 3.49% Castro::clean_state() 62 0.1132 0.1168 0.1221 3.42% Castro::estTimeStep() 21 0.02539 0.06928 0.1154 3.23% FabArray::ParallelCopy() 41 0.07465 0.09817 0.1098 3.08% Amr::FinalizeInit() 1 0.02657 0.06208 0.09987 2.80% Castro::do_old_sources() 10 0.09074 0.09494 0.09902 2.77% FabArray::setVal() 143 0.06648 0.07726 0.09041 2.53% amrex::Copy() 193 0.07827 0.08175 0.08917 2.50% Castro::initialize_advance() 10 0.07025 0.07739 0.08732 2.45% Castro::do_new_sources() 10 0.05986 0.0691 0.07914 2.22% Castro::computeInitialDt() 2 0.002169 0.03778 0.07549 2.12% Castro::computeTemp() 63 0.0653 0.06767 0.07115 1.99% FabArray::ParallelCopy_finish() 41 0.03198 0.0557 0.06643 1.86% Castro::reset_internal_energy(MultiFab) 63 0.0465 0.04802 0.0503 1.41% Castro::reset_internal_energy(Fab) 1008 0.04621 0.04774 0.05001 1.40% Castro::normalize_species() 62 0.04103 0.0424 0.04427 1.24% FabArray::ParallelCopy_nowait() 41 0.03998 0.04239 0.044 1.23% Castro::construct_new_source() 50 0.02843 0.0322 0.03602 1.01% StateDataPhysBCFunct::() 41 0.02879 0.03211 0.03518 0.99% StateData::FillBoundary(geom) 41 0.02869 0.032 0.03508 0.98% Castro::finalize_do_advance() 10 0.01203 0.02341 0.03348 0.94% Gravity::interpolate_monopole_grav() 21 0.02882 0.03008 0.03271 0.92% Castro::construct_new_gravity_source() 10 0.02215 0.02584 0.02974 0.83% Castro::post_init() 1 0.02358 0.02384 0.02396 0.67% Amr::writePlotFile() 2 0.02077 0.02087 0.02102 0.59% Castro::check_for_nan() 20 0.01109 0.01228 0.01677 0.47% MultiFab::contains_nan() 20 0.01107 0.01225 0.0167 0.47% Castro::post_timestep() 10 0.0156 0.01589 0.01642 0.46% Castro::apply_source_to_state() 20 0.01291 0.01372 0.01492 0.42% FabArray::Saxpy() 20 0.01286 0.01368 0.01487 0.42% FabArray::setDomainBndry() 41 0.00748 0.0119 0.01432 0.40% VisMF::Write(FabArray) 2 0.008933 0.00939 0.01173 0.33% Castro::Castro() 1 0.01101 0.01112 0.01123 0.31% Castro::construct_old_source() 50 0.009824 0.01039 0.01071 0.30% Castro::construct_old_gravity_source() 10 0.009765 0.01032 0.01063 0.30% Castro::computeNewDt() 9 0.00937 0.00938 0.00939 0.26% Castro::enforce_min_density() 62 0.007116 0.007435 0.007617 0.21% Castro::initMFs() 1 0.00637 0.006414 0.006478 0.18% AmrLevel::AmrLevel(dm) 1 0.005282 0.005303 0.005332 0.15% StateData::define() 4 0.00526 0.005285 0.005316 0.15% Castro::swap_state_time_levels() 10 0.003299 0.004433 0.004618 0.13% Castro::finalize_advance() 10 0.002981 0.003722 0.004491 0.13% Castro::buildMetrics() 1 0.001613 0.00164 0.001665 0.05% Castro::post_regrid() 1 0.001534 0.001587 0.001648 0.05% Amr::InitAmr() 1 0.0003672 0.0003866 0.0005066 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.26e-05 0.0001256 0.0001457 0.00% DistributionMapping::LeastUsedCPUs() 1 7.686e-06 0.00012 0.0001378 0.00% Castro::enforce_consistent_e() 1 7.59e-05 9.295e-05 0.0001119 0.00% FabArrayBase::getCPC() 41 6.817e-05 7.549e-05 8.164e-05 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 5.67e-05 7.954e-05 0.00% FabArrayBase::CPC::define() 2 2.13e-05 2.635e-05 3.035e-05 0.00% Castro::enforce_speed_limit() 62 2.546e-05 2.734e-05 2.971e-05 0.00% Gravity::set_mass_offset() 10 8.581e-06 1.091e-05 1.339e-05 0.00% Gravity::swapTimeLevels() 10 7.952e-06 9.568e-06 1.221e-05 0.00% Amr::initSubcycle() 1 9.875e-06 1.021e-05 1.146e-05 0.00% Castro::create_source_corrector() 10 7.43e-06 8.52e-06 1.004e-05 0.00% Castro::FluxRegCrseInit 10 5.88e-06 7.759e-06 9.154e-06 0.00% Castro::retry_advance_ctu() 10 6.832e-06 7.383e-06 8.185e-06 0.00% Castro::FluxRegFineAdd() 10 2.041e-06 2.399e-06 2.765e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 9.254e-07 1.092e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.01-38-g689144d157a0) finalized