Initializing AMReX (24.02-1-g296ed40e16ae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-1-g296ed40e16ae) initialized Starting run at 06:33:38 UTC on 2024-02-02. Successfully read inputs file ... Castro git describe: 24.02-2-gcff739306 AMReX git describe: 24.02-1-g296ed40e1 Microphysics git describe: 24.02-4-g29b594fd reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012896373 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355913459 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343308249 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325565201 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324525286 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325121336 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.364777899 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.341318264 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.324232649 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311446854 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310693871 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007615663 seconds Ending run at 06:33:41 UTC on 2024-02-02. Run time = 3.529465776 Run time without initialization = 3.339930582 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.529 ... 3.529 ... 3.53 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3265 2.3692 2.3980 67.94% Gravity::make_radial_gravity() 21 0.2877 0.2955 0.3081 8.73% check_for_negative_density() 10 0.07008 0.09832 0.1458 4.13% Castro::initData() 1 0.04714 0.08579 0.1261 3.57% Castro::estTimeStep() 21 0.0313 0.07024 0.1132 3.21% FabArray::ParallelCopy_finish() 41 0.03689 0.0596 0.1026 2.91% amrex::Copy() 193 0.06076 0.0774 0.08815 2.50% FabArray::setVal() 143 0.05412 0.06714 0.07258 2.06% Castro::reset_internal_energy(Fab) 1008 0.04589 0.04791 0.05076 1.44% Castro::normalize_species() 62 0.04126 0.04253 0.04623 1.31% FabArray::ParallelCopy_nowait() 41 0.03541 0.04147 0.04419 1.25% FillPatchIterator::Initialize 41 0.02812 0.03275 0.03734 1.06% StateData::FillBoundary(geom) 41 0.0297 0.03118 0.03487 0.99% Gravity::interpolate_monopole_grav() 21 0.02761 0.02909 0.02999 0.85% Castro::construct_new_gravity_source() 10 0.02141 0.02411 0.0269 0.76% Castro::computeTemp() 63 0.01923 0.01966 0.02072 0.59% Castro::initialize_do_advance() 10 0.01186 0.01665 0.01793 0.51% Castro::initialize_advance() 10 0.003846 0.01115 0.01593 0.45% FabArray::Saxpy() 20 0.01114 0.01296 0.01411 0.40% MultiFab::contains_nan() 20 0.0101 0.01095 0.01182 0.33% FabArray::setDomainBndry() 41 0.006477 0.009177 0.01178 0.33% VisMF::Write(FabArray) 2 0.008728 0.00931 0.01171 0.33% Castro::construct_old_gravity_source() 10 0.00663 0.009909 0.01058 0.30% Amr::writePlotFile() 2 0.006245 0.008911 0.009453 0.27% Castro::initMFs() 1 0.006297 0.00694 0.008147 0.23% Castro::enforce_min_density() 62 0.007122 0.007384 0.007707 0.22% Castro::construct_new_source() 50 0.005883 0.006479 0.006949 0.20% StateData::define() 4 0.00522 0.005649 0.005974 0.17% main() 1 0.003601 0.004347 0.004633 0.13% Castro::swap_state_time_levels() 10 0.003177 0.004173 0.004406 0.12% Gravity::get_new_grav_vector() 11 0.002898 0.003478 0.00387 0.11% Gravity::get_old_grav_vector() 10 0.001534 0.001919 0.002308 0.07% Amr::coarseTimeStep() 10 0.001293 0.001596 0.002082 0.06% Castro::buildMetrics() 1 0.001483 0.001605 0.001716 0.05% Castro::finalize_do_advance() 10 0.0004474 0.001063 0.001304 0.04% AmrLevel::FillPatch() 41 0.0007466 0.0008984 0.00105 0.03% Amr::InitAmr() 1 0.0003423 0.0003964 0.0004933 0.01% Amr::timeStep() 10 0.0001443 0.0002175 0.0004715 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000293 0.0003109 0.0003514 0.01% Castro::do_advance_ctu() 10 0.0001399 0.0001544 0.0001855 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001089 0.0001302 0.0001758 0.00% Castro::clean_state() 62 0.0001375 0.0001558 0.0001757 0.00% StateDataPhysBCFunct::() 41 9.882e-05 0.0001362 0.0001604 0.00% DistributionMapping::LeastUsedCPUs() 1 7.72e-06 9.655e-05 0.0001466 0.00% Castro::finalize_advance() 10 7.437e-05 0.0001005 0.0001254 0.00% FabArray::ParallelCopy() 41 7.65e-05 8.933e-05 0.0001164 0.00% Castro::do_old_sources() 10 7.725e-05 9.518e-05 0.0001154 0.00% Castro::construct_old_source() 50 5.522e-05 7.491e-05 0.0001042 0.00% FillPatchSingleLevel 41 6.657e-05 7.844e-05 9.104e-05 0.00% Castro::do_new_sources() 10 5.573e-05 7.431e-05 9.046e-05 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.166e-05 9.009e-05 0.00% Castro::Castro() 1 5.595e-05 6.478e-05 8.235e-05 0.00% Amr::FinalizeInit() 1 4.094e-06 1.303e-05 7.022e-05 0.00% Amr::writeSmallPlotFile() 1 3.347e-05 5.221e-05 6.934e-05 0.00% FabArrayBase::getCPC() 41 4.32e-05 5.308e-05 6.491e-05 0.00% Castro::construct_new_gravity() 10 3.172e-05 3.903e-05 6.156e-05 0.00% Castro::subcycle_advance_ctu() 10 4.564e-05 4.962e-05 5.935e-05 0.00% Castro::apply_source_to_state() 20 4.372e-05 5.076e-05 5.758e-05 0.00% Castro::enforce_speed_limit() 62 2.685e-05 3.38e-05 5.723e-05 0.00% Castro::advance() 10 3.982e-05 4.499e-05 4.935e-05 0.00% Castro::construct_old_gravity() 10 3.266e-05 3.684e-05 4.344e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.542e-05 3.026e-05 0.00% Castro::expand_state() 10 2.094e-05 2.394e-05 2.843e-05 0.00% Castro::check_for_nan() 20 2.192e-05 2.363e-05 2.578e-05 0.00% Amr::defBaseLevel() 1 1.681e-05 1.95e-05 2.389e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.44e-05 1.897e-05 2.283e-05 0.00% Castro::post_init() 1 1.424e-05 1.59e-05 1.86e-05 0.00% Castro::post_timestep() 10 1.325e-05 1.461e-05 1.752e-05 0.00% Gravity::set_mass_offset() 10 8.681e-06 1.053e-05 1.587e-05 0.00% Amr::initSubcycle() 1 1.02e-05 1.086e-05 1.161e-05 0.00% Gravity::swapTimeLevels() 10 6.168e-06 9.779e-06 1.146e-05 0.00% Castro::create_source_corrector() 10 7.1e-06 9.128e-06 1.072e-05 0.00% Castro::retry_advance_ctu() 10 6.387e-06 7.885e-06 9.957e-06 0.00% Castro::FluxRegCrseInit 10 7.861e-06 8.693e-06 9.355e-06 0.00% Castro::computeNewDt() 9 7.137e-06 7.918e-06 8.498e-06 0.00% Amr::init() 1 2.01e-06 3.754e-06 7.828e-06 0.00% Castro::post_regrid() 1 1.719e-06 3.649e-06 6.402e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.604e-06 4.477e-06 5.982e-06 0.00% Amr::InitializeInit() 1 1.78e-06 2.796e-06 5.419e-06 0.00% Castro::computeInitialDt() 2 3.126e-06 3.692e-06 4.865e-06 0.00% Castro::FluxRegFineAdd() 10 2.153e-06 2.335e-06 2.498e-06 0.00% Amr::initialInit() 1 1.429e-06 1.686e-06 2.232e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 9.919e-07 1.108e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.529 3.53 100.00% Amr::coarseTimeStep() 10 3.328 3.328 3.328 94.28% Amr::timeStep() 10 3.315 3.315 3.315 93.93% Castro::advance() 10 3.299 3.299 3.299 93.48% Castro::subcycle_advance_ctu() 10 3.219 3.225 3.242 91.86% Castro::do_advance_ctu() 10 3.219 3.225 3.242 91.86% Castro::construct_ctu_hydro_source() 10 2.484 2.488 2.493 70.64% Gravity::make_radial_gravity() 21 0.3036 0.3115 0.3214 9.11% AmrLevel::FillPatch() 41 0.1927 0.2059 0.2277 6.45% Gravity::get_new_grav_vector() 11 0.207 0.2085 0.2101 5.95% FillPatchIterator::Initialize 41 0.1592 0.1747 0.204 5.78% Castro::construct_old_gravity() 10 0.1765 0.1849 0.1934 5.48% Gravity::get_old_grav_vector() 10 0.176 0.1843 0.1928 5.46% Amr::init() 1 0.1889 0.189 0.189 5.36% Castro::construct_new_gravity() 10 0.1829 0.1838 0.1846 5.23% Amr::initialInit() 1 0.1756 0.1758 0.176 4.99% Castro::initialize_do_advance() 10 0.1537 0.1638 0.1729 4.90% FillPatchIterator::FillFromLevel0() 41 0.1126 0.1328 0.1683 4.77% FillPatchSingleLevel 41 0.1125 0.1326 0.1681 4.76% Amr::InitializeInit() 1 0.06628 0.106 0.1474 4.18% Amr::defBaseLevel() 1 0.06628 0.106 0.1474 4.18% check_for_negative_density() 10 0.07008 0.09832 0.1458 4.13% FabArray::ParallelCopy() 41 0.08052 0.1012 0.1382 3.92% Castro::initData() 1 0.05097 0.08952 0.1297 3.67% Castro::expand_state() 10 0.09875 0.1101 0.125 3.54% Castro::clean_state() 62 0.115 0.1171 0.1246 3.53% Castro::estTimeStep() 21 0.0313 0.07024 0.1132 3.21% Amr::FinalizeInit() 1 0.02859 0.06979 0.1097 3.11% Castro::do_old_sources() 10 0.1023 0.1063 0.1086 3.08% FabArray::ParallelCopy_finish() 41 0.03689 0.0596 0.1026 2.91% amrex::Copy() 193 0.06076 0.0774 0.08815 2.50% Castro::computeInitialDt() 2 0.002266 0.04363 0.08342 2.36% Castro::initialize_advance() 10 0.05272 0.07097 0.07687 2.18% FabArray::setVal() 143 0.05412 0.06714 0.07258 2.06% Castro::computeTemp() 63 0.06543 0.06788 0.07179 2.03% Castro::do_new_sources() 10 0.06008 0.06387 0.07002 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04619 0.04822 0.05107 1.45% Castro::reset_internal_energy(Fab) 1008 0.04589 0.04791 0.05076 1.44% Castro::normalize_species() 62 0.04126 0.04253 0.04623 1.31% FabArray::ParallelCopy_nowait() 41 0.0355 0.04154 0.04429 1.25% StateDataPhysBCFunct::() 41 0.0298 0.03131 0.03503 0.99% StateData::FillBoundary(geom) 41 0.0297 0.03118 0.03487 0.99% Castro::construct_new_source() 50 0.02729 0.03059 0.03385 0.96% Gravity::interpolate_monopole_grav() 21 0.02761 0.02909 0.02999 0.85% Castro::construct_new_gravity_source() 10 0.02141 0.02411 0.0269 0.76% Castro::post_init() 1 0.02546 0.0258 0.02604 0.74% Castro::finalize_do_advance() 10 0.012 0.01796 0.02302 0.65% Amr::writePlotFile() 2 0.02074 0.02089 0.02115 0.60% Castro::post_timestep() 10 0.01542 0.01588 0.01621 0.46% Castro::apply_source_to_state() 20 0.01119 0.01301 0.01417 0.40% FabArray::Saxpy() 20 0.01114 0.01296 0.01411 0.40% Castro::check_for_nan() 20 0.01012 0.01097 0.01184 0.34% Castro::Castro() 1 0.009796 0.0107 0.01183 0.34% MultiFab::contains_nan() 20 0.0101 0.01095 0.01182 0.33% FabArray::setDomainBndry() 41 0.006477 0.009177 0.01178 0.33% VisMF::Write(FabArray) 2 0.008728 0.00931 0.01171 0.33% Castro::construct_old_source() 50 0.006686 0.009984 0.01066 0.30% Castro::construct_old_gravity_source() 10 0.00663 0.009909 0.01058 0.30% Castro::computeNewDt() 9 0.009704 0.009719 0.009727 0.28% Castro::initMFs() 1 0.006297 0.00694 0.008147 0.23% Castro::enforce_min_density() 62 0.007122 0.007384 0.007707 0.22% AmrLevel::AmrLevel(dm) 1 0.005237 0.005668 0.005994 0.17% StateData::define() 4 0.00522 0.005649 0.005974 0.17% Castro::swap_state_time_levels() 10 0.003177 0.004173 0.004406 0.12% Castro::finalize_advance() 10 0.003096 0.003371 0.003591 0.10% Castro::post_regrid() 1 0.001491 0.001596 0.001938 0.05% Castro::buildMetrics() 1 0.001603 0.001738 0.001869 0.05% Amr::InitAmr() 1 0.0003525 0.0004072 0.0005035 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.22e-05 0.000102 0.0001535 0.00% DistributionMapping::LeastUsedCPUs() 1 7.72e-06 9.655e-05 0.0001466 0.00% FabArrayBase::getCPC() 41 6.764e-05 7.85e-05 9.288e-05 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.166e-05 9.009e-05 0.00% Amr::writeSmallPlotFile() 1 3.347e-05 5.221e-05 6.934e-05 0.00% Castro::enforce_speed_limit() 62 2.685e-05 3.38e-05 5.723e-05 0.00% FabArrayBase::CPC::define() 2 2.174e-05 2.542e-05 3.026e-05 0.00% Gravity::set_mass_offset() 10 8.681e-06 1.053e-05 1.587e-05 0.00% Amr::initSubcycle() 1 1.02e-05 1.086e-05 1.161e-05 0.00% Gravity::swapTimeLevels() 10 6.168e-06 9.779e-06 1.146e-05 0.00% Castro::create_source_corrector() 10 7.1e-06 9.128e-06 1.072e-05 0.00% Castro::retry_advance_ctu() 10 6.387e-06 7.885e-06 9.957e-06 0.00% Castro::FluxRegCrseInit 10 7.861e-06 8.693e-06 9.355e-06 0.00% Castro::FluxRegFineAdd() 10 2.153e-06 2.335e-06 2.498e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 9.919e-07 1.108e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-1-g296ed40e16ae) finalized