Initializing AMReX (24.02-1-g296ed40e16ae)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-1-g296ed40e16ae) initialized Starting run at 06:33:29 UTC on 2024-02-05. Successfully read inputs file ... Castro git describe: 24.02-2-gcff739306 AMReX git describe: 24.02-1-g296ed40e1 Microphysics git describe: 24.02-5-g56253c93 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013197394 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368461454 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354978321 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342664596 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.346447496 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359681366 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341630172 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312136966 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313062956 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313619028 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315447777 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007620936 seconds Ending run at 06:33:33 UTC on 2024-02-05. Run time = 3.568585503 Run time without initialization = 3.381536854 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.567 ... 3.568 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2990 2.4006 2.4563 68.83% Gravity::make_radial_gravity() 21 0.2897 0.2938 0.3075 8.62% check_for_negative_density() 10 0.01105 0.06922 0.173 4.85% Castro::initData() 1 0.04726 0.08646 0.1248 3.50% Castro::estTimeStep() 21 0.02764 0.07411 0.1112 3.12% amrex::Copy() 193 0.07811 0.0856 0.09389 2.63% FabArray::setVal() 143 0.0639 0.07597 0.08807 2.47% FabArray::ParallelCopy_finish() 41 0.03463 0.05403 0.06719 1.88% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04778 0.04896 1.37% FabArray::ParallelCopy_nowait() 41 0.04099 0.04414 0.04598 1.29% Castro::normalize_species() 62 0.04158 0.04255 0.04345 1.22% FillPatchIterator::Initialize 41 0.02846 0.03664 0.03961 1.11% StateData::FillBoundary(geom) 41 0.03105 0.03283 0.03631 1.02% Gravity::interpolate_monopole_grav() 21 0.02776 0.02989 0.03165 0.89% Castro::construct_new_gravity_source() 10 0.02249 0.02576 0.02912 0.82% Castro::initialize_do_advance() 10 0.01844 0.02008 0.02297 0.64% Castro::computeTemp() 63 0.01914 0.01975 0.02055 0.58% Castro::initialize_advance() 10 0.009648 0.01202 0.01478 0.41% FabArray::Saxpy() 20 0.01245 0.01371 0.01463 0.41% FabArray::setDomainBndry() 41 0.008046 0.01247 0.01437 0.40% MultiFab::contains_nan() 20 0.01112 0.01179 0.01246 0.35% VisMF::Write(FabArray) 2 0.0089 0.00937 0.01181 0.33% Castro::construct_old_gravity_source() 10 0.009519 0.01024 0.01083 0.30% Amr::writePlotFile() 2 0.006272 0.008597 0.009287 0.26% Castro::initMFs() 1 0.006374 0.006844 0.008022 0.22% Castro::enforce_min_density() 62 0.007164 0.007501 0.007928 0.22% Castro::construct_new_source() 50 0.006088 0.006275 0.006518 0.18% StateData::define() 4 0.005231 0.005456 0.005962 0.17% main() 1 0.003452 0.004527 0.005159 0.14% Castro::swap_state_time_levels() 10 0.003399 0.004491 0.004672 0.13% Gravity::get_new_grav_vector() 11 0.003055 0.003927 0.004212 0.12% Amr::coarseTimeStep() 10 0.001405 0.002592 0.003401 0.10% Gravity::get_old_grav_vector() 10 0.001557 0.002242 0.002585 0.07% Castro::buildMetrics() 1 0.001466 0.001552 0.001738 0.05% Castro::finalize_do_advance() 10 0.001014 0.001285 0.001499 0.04% AmrLevel::FillPatch() 41 0.0007851 0.0009688 0.001145 0.03% Amr::InitAmr() 1 0.0003525 0.0003866 0.0005588 0.02% Amr::timeStep() 10 0.0001559 0.0002221 0.0004872 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002842 0.0003043 0.0003345 0.01% DistributionMapping::LeastUsedCPUs() 1 9.428e-06 0.0001882 0.0002288 0.01% Castro::do_advance_ctu() 10 0.0001318 0.0001595 0.0001996 0.01% Castro::clean_state() 62 0.0001456 0.0001594 0.0001746 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001145 0.0001298 0.0001703 0.00% StateDataPhysBCFunct::() 41 0.0001041 0.0001171 0.0001269 0.00% Castro::finalize_advance() 10 8.503e-05 0.000102 0.0001259 0.00% Castro::do_old_sources() 10 8.627e-05 9.814e-05 0.0001143 0.00% Castro::construct_old_source() 50 5.862e-05 8.205e-05 0.0001003 0.00% FabArray::ParallelCopy() 41 8.168e-05 9.097e-05 9.799e-05 0.00% Castro::enforce_consistent_e() 1 8.187e-05 8.979e-05 9.684e-05 0.00% Amr::FinalizeInit() 1 3.36e-06 1.628e-05 9.341e-05 0.00% Castro::Castro() 1 5.167e-05 6.964e-05 9.176e-05 0.00% FillPatchSingleLevel 41 6.533e-05 7.731e-05 8.998e-05 0.00% Castro::do_new_sources() 10 5.685e-05 6.738e-05 7.964e-05 0.00% FabArrayBase::getCPC() 41 4.721e-05 5.974e-05 7.111e-05 0.00% Castro::subcycle_advance_ctu() 10 4.312e-05 5.403e-05 6.717e-05 0.00% Amr::writeSmallPlotFile() 1 3.226e-05 5.2e-05 6.705e-05 0.00% Castro::apply_source_to_state() 20 4.059e-05 5.095e-05 6.365e-05 0.00% Castro::construct_new_gravity() 10 3.308e-05 4.299e-05 6.103e-05 0.00% Castro::construct_old_gravity() 10 3.787e-05 4.291e-05 5.895e-05 0.00% Castro::advance() 10 3.72e-05 4.837e-05 5.416e-05 0.00% Amr::defBaseLevel() 1 1.641e-05 2.434e-05 3.372e-05 0.00% Castro::enforce_speed_limit() 62 2.731e-05 3.022e-05 3.345e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.63e-05 3.17e-05 0.00% Castro::expand_state() 10 2.347e-05 2.614e-05 2.958e-05 0.00% Castro::check_for_nan() 20 2.322e-05 2.514e-05 2.736e-05 0.00% Castro::post_init() 1 1.414e-05 1.622e-05 1.894e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.26e-05 1.497e-05 1.842e-05 0.00% Castro::post_timestep() 10 1.109e-05 1.337e-05 1.513e-05 0.00% Gravity::set_mass_offset() 10 8.522e-06 1.085e-05 1.387e-05 0.00% Gravity::swapTimeLevels() 10 7.918e-06 1.056e-05 1.265e-05 0.00% Amr::initSubcycle() 1 9.811e-06 1.049e-05 1.173e-05 0.00% Castro::computeNewDt() 9 7.694e-06 8.89e-06 1.111e-05 0.00% Castro::create_source_corrector() 10 7.959e-06 9.326e-06 1.049e-05 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.453e-06 9.758e-06 0.00% Castro::FluxRegCrseInit 10 6.975e-06 7.593e-06 8.942e-06 0.00% Amr::init() 1 1.838e-06 3.379e-06 6.27e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.569e-06 4.276e-06 5.321e-06 0.00% Castro::computeInitialDt() 2 2.56e-06 3.574e-06 5.298e-06 0.00% Amr::InitializeInit() 1 1.7e-06 2.345e-06 5.283e-06 0.00% Castro::post_regrid() 1 1.518e-06 3.29e-06 5.108e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.416e-06 3.436e-06 0.00% Amr::initialInit() 1 1.251e-06 1.664e-06 2.385e-06 0.00% DistributionMapping::Distribute() 1 8.44e-07 9.378e-07 1.038e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.567 3.568 3.569 100.00% Amr::coarseTimeStep() 10 3.369 3.369 3.369 94.40% Amr::timeStep() 10 3.355 3.356 3.357 94.07% Castro::advance() 10 3.339 3.34 3.341 93.61% Castro::subcycle_advance_ctu() 10 3.249 3.259 3.268 91.57% Castro::do_advance_ctu() 10 3.249 3.259 3.268 91.57% Castro::construct_ctu_hydro_source() 10 2.489 2.491 2.493 69.86% Gravity::make_radial_gravity() 21 0.3084 0.3122 0.3231 9.06% AmrLevel::FillPatch() 41 0.1983 0.2151 0.2316 6.49% Gravity::get_new_grav_vector() 11 0.2155 0.2169 0.218 6.11% FillPatchIterator::Initialize 41 0.1623 0.1806 0.1966 5.51% Castro::construct_new_gravity() 10 0.1926 0.1935 0.1947 5.46% Castro::construct_old_gravity() 10 0.1817 0.1855 0.1944 5.45% Gravity::get_old_grav_vector() 10 0.1811 0.1846 0.1933 5.42% Castro::initialize_do_advance() 10 0.1661 0.1805 0.1906 5.34% Amr::init() 1 0.1863 0.1865 0.1865 5.23% Amr::initialInit() 1 0.173 0.1732 0.1734 4.86% check_for_negative_density() 10 0.01105 0.06922 0.173 4.85% FillPatchIterator::FillFromLevel0() 41 0.1114 0.1315 0.1473 4.13% FillPatchSingleLevel 41 0.1113 0.1314 0.1472 4.13% Amr::InitializeInit() 1 0.06726 0.107 0.1463 4.10% Amr::defBaseLevel() 1 0.06725 0.107 0.1463 4.10% Castro::expand_state() 10 0.1094 0.1222 0.134 3.76% Castro::initData() 1 0.05129 0.0905 0.1284 3.60% Castro::clean_state() 62 0.1153 0.1172 0.1201 3.37% FabArray::ParallelCopy() 41 0.07859 0.09835 0.1116 3.13% Castro::estTimeStep() 21 0.02764 0.07411 0.1112 3.12% Amr::FinalizeInit() 1 0.02697 0.06621 0.1058 2.96% Castro::do_old_sources() 10 0.09383 0.09753 0.1022 2.86% amrex::Copy() 193 0.07811 0.0856 0.09389 2.63% FabArray::setVal() 143 0.0639 0.07597 0.08807 2.47% Castro::initialize_advance() 10 0.06831 0.07711 0.08691 2.44% Castro::computeInitialDt() 2 0.00216 0.04145 0.08125 2.28% Castro::do_new_sources() 10 0.05985 0.06917 0.07872 2.21% Castro::computeTemp() 63 0.06549 0.06783 0.06984 1.96% FabArray::ParallelCopy_finish() 41 0.03463 0.05403 0.06719 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04632 0.04808 0.04929 1.38% Castro::reset_internal_energy(Fab) 1008 0.04601 0.04778 0.04896 1.37% FabArray::ParallelCopy_nowait() 41 0.04107 0.04423 0.04607 1.29% Castro::normalize_species() 62 0.04158 0.04255 0.04345 1.22% StateDataPhysBCFunct::() 41 0.03118 0.03294 0.03642 1.02% StateData::FillBoundary(geom) 41 0.03105 0.03283 0.03631 1.02% Castro::construct_new_source() 50 0.02858 0.03203 0.03529 0.99% Castro::finalize_do_advance() 10 0.01399 0.02472 0.03524 0.99% Gravity::interpolate_monopole_grav() 21 0.02776 0.02989 0.03165 0.89% Castro::construct_new_gravity_source() 10 0.02249 0.02576 0.02912 0.82% Castro::post_init() 1 0.02413 0.02431 0.02452 0.69% Amr::writePlotFile() 2 0.02085 0.02095 0.02117 0.59% Castro::post_timestep() 10 0.01546 0.01587 0.01631 0.46% Castro::apply_source_to_state() 20 0.01249 0.01376 0.01467 0.41% FabArray::Saxpy() 20 0.01245 0.01371 0.01463 0.41% FabArray::setDomainBndry() 41 0.008046 0.01247 0.01437 0.40% Castro::check_for_nan() 20 0.01115 0.01181 0.01249 0.35% MultiFab::contains_nan() 20 0.01112 0.01179 0.01246 0.35% VisMF::Write(FabArray) 2 0.0089 0.00937 0.01181 0.33% Castro::Castro() 1 0.01037 0.01083 0.01168 0.33% Castro::construct_old_source() 50 0.009588 0.01032 0.01093 0.31% Castro::construct_old_gravity_source() 10 0.009519 0.01024 0.01083 0.30% Castro::computeNewDt() 9 0.009238 0.009244 0.00925 0.26% Castro::initMFs() 1 0.006374 0.006844 0.008022 0.22% Castro::enforce_min_density() 62 0.007164 0.007501 0.007928 0.22% AmrLevel::AmrLevel(dm) 1 0.005247 0.005471 0.005977 0.17% StateData::define() 4 0.005231 0.005456 0.005962 0.17% Castro::swap_state_time_levels() 10 0.003399 0.004491 0.004672 0.13% Castro::finalize_advance() 10 0.002982 0.003718 0.004481 0.13% Castro::buildMetrics() 1 0.001591 0.00169 0.001896 0.05% Castro::post_regrid() 1 0.001492 0.001578 0.001636 0.05% Amr::InitAmr() 1 0.0003632 0.000397 0.0005706 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.521e-05 0.0001934 0.0002352 0.01% DistributionMapping::LeastUsedCPUs() 1 9.428e-06 0.0001882 0.0002288 0.01% FabArrayBase::getCPC() 41 6.892e-05 8.604e-05 9.933e-05 0.00% Castro::enforce_consistent_e() 1 8.187e-05 8.979e-05 9.684e-05 0.00% Amr::writeSmallPlotFile() 1 3.226e-05 5.2e-05 6.705e-05 0.00% Castro::enforce_speed_limit() 62 2.731e-05 3.022e-05 3.345e-05 0.00% FabArrayBase::CPC::define() 2 2.12e-05 2.63e-05 3.17e-05 0.00% Gravity::set_mass_offset() 10 8.522e-06 1.085e-05 1.387e-05 0.00% Gravity::swapTimeLevels() 10 7.918e-06 1.056e-05 1.265e-05 0.00% Amr::initSubcycle() 1 9.811e-06 1.049e-05 1.173e-05 0.00% Castro::create_source_corrector() 10 7.959e-06 9.326e-06 1.049e-05 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.453e-06 9.758e-06 0.00% Castro::FluxRegCrseInit 10 6.975e-06 7.593e-06 8.942e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.416e-06 3.436e-06 0.00% DistributionMapping::Distribute() 1 8.44e-07 9.378e-07 1.038e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 30 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-1-g296ed40e16ae) finalized