Initializing AMReX (24.02-4-ga8bc0bfbcf10)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-4-ga8bc0bfbcf10) initialized Starting run at 06:43:42 UTC on 2024-02-06. Successfully read inputs file ... Castro git describe: 24.02-2-gcff739306 AMReX git describe: 24.02-4-ga8bc0bfbc Microphysics git describe: 24.02-6-g49fba8d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015005193 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356757486 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349584879 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328312432 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327644557 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328257796 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.366279394 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316143851 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31289936 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307658393 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310704506 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007408168 seconds Ending run at 06:43:46 UTC on 2024-02-06. Run time = 3.506808294 Run time without initialization = 3.317214925 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.506 ... 3.507 ... 3.507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3008 2.3492 2.3956 68.31% Gravity::make_radial_gravity() 21 0.2844 0.3 0.316 9.01% check_for_negative_density() 10 0.02578 0.07849 0.1303 3.71% Castro::initData() 1 0.04742 0.08553 0.1257 3.58% Castro::estTimeStep() 21 0.0231 0.06888 0.1102 3.14% amrex::Copy() 193 0.06627 0.0828 0.09962 2.84% FabArray::ParallelCopy_finish() 41 0.0382 0.05779 0.08794 2.51% FabArray::setVal() 143 0.06988 0.07395 0.08191 2.34% Castro::reset_internal_energy(Fab) 1008 0.04662 0.04775 0.04857 1.38% FabArray::ParallelCopy_nowait() 41 0.03389 0.04135 0.04406 1.26% Castro::normalize_species() 62 0.04103 0.04147 0.04234 1.21% FillPatchIterator::Initialize 41 0.02734 0.03356 0.03643 1.04% StateData::FillBoundary(geom) 41 0.0297 0.0329 0.03641 1.04% Gravity::interpolate_monopole_grav() 21 0.02754 0.02945 0.03066 0.87% Castro::construct_new_gravity_source() 10 0.02112 0.02335 0.02499 0.71% Castro::computeTemp() 63 0.01912 0.0196 0.02017 0.58% Castro::initialize_do_advance() 10 0.01204 0.01763 0.01876 0.54% Castro::initialize_advance() 10 0.01054 0.01317 0.01614 0.46% FabArray::Saxpy() 20 0.01009 0.01252 0.0138 0.39% VisMF::Write(FabArray) 2 0.008779 0.009695 0.01352 0.39% MultiFab::contains_nan() 20 0.009789 0.01074 0.0117 0.33% Amr::writePlotFile() 2 0.006182 0.009885 0.01083 0.31% FabArray::setDomainBndry() 41 0.00655 0.009453 0.01073 0.31% Castro::construct_old_gravity_source() 10 0.00639 0.009249 0.01014 0.29% Castro::initMFs() 1 0.006361 0.006661 0.008504 0.24% Gravity::get_old_grav_vector() 10 0.001465 0.00262 0.007022 0.20% Castro::construct_new_source() 50 0.005959 0.006456 0.006867 0.20% Castro::enforce_min_density() 62 0.0057 0.006105 0.006494 0.19% StateData::define() 4 0.005262 0.005394 0.006059 0.17% main() 1 0.00418 0.004606 0.004841 0.14% Castro::swap_state_time_levels() 10 0.003133 0.00423 0.004419 0.13% Gravity::get_new_grav_vector() 11 0.002759 0.003625 0.004004 0.11% Amr::coarseTimeStep() 10 0.001716 0.00217 0.002793 0.08% Castro::buildMetrics() 1 0.001501 0.001556 0.001848 0.05% Castro::finalize_do_advance() 10 0.000607 0.001144 0.001408 0.04% AmrLevel::FillPatch() 41 0.0007735 0.0009083 0.001051 0.03% Amr::InitAmr() 1 0.000342 0.0003684 0.0004767 0.01% Amr::timeStep() 10 0.0001615 0.0002244 0.0003602 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002612 0.0002821 0.0003103 0.01% Castro::clean_state() 62 0.0001299 0.0001542 0.0001817 0.01% Castro::do_advance_ctu() 10 0.0001181 0.0001425 0.0001617 0.00% DistributionMapping::LeastUsedCPUs() 1 7.127e-06 0.0001094 0.0001324 0.00% StateDataPhysBCFunct::() 41 0.0001014 0.0001128 0.0001316 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001002 0.00011 0.0001215 0.00% Castro::finalize_advance() 10 8.032e-05 9.79e-05 0.000121 0.00% Castro::do_old_sources() 10 6.626e-05 8.993e-05 0.0001065 0.00% Castro::enforce_consistent_e() 1 7.749e-05 8.875e-05 0.000105 0.00% Castro::Castro() 1 5.964e-05 7.366e-05 9.626e-05 0.00% Amr::FinalizeInit() 1 4.3e-06 1.571e-05 9.243e-05 0.00% FabArray::ParallelCopy() 41 6.599e-05 7.891e-05 8.97e-05 0.00% FillPatchSingleLevel 41 6.326e-05 7.365e-05 8.871e-05 0.00% Castro::construct_old_source() 50 5.175e-05 7.26e-05 8.523e-05 0.00% Castro::do_new_sources() 10 5.112e-05 6.712e-05 7.329e-05 0.00% Amr::writeSmallPlotFile() 1 3.136e-05 4.959e-05 7.086e-05 0.00% FabArrayBase::getCPC() 41 4.571e-05 5.271e-05 6.598e-05 0.00% Castro::subcycle_advance_ctu() 10 4.519e-05 5e-05 6.102e-05 0.00% Castro::advance() 10 4.087e-05 4.855e-05 5.958e-05 0.00% Castro::apply_source_to_state() 20 3.302e-05 4.386e-05 5.792e-05 0.00% Castro::construct_old_gravity() 10 2.96e-05 3.885e-05 5.185e-05 0.00% Castro::construct_new_gravity() 10 3.304e-05 3.631e-05 4.254e-05 0.00% Amr::defBaseLevel() 1 1.733e-05 2.311e-05 3.243e-05 0.00% Castro::enforce_speed_limit() 62 2.483e-05 2.892e-05 3.233e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.526e-05 3.166e-05 0.00% Castro::expand_state() 10 1.994e-05 2.542e-05 3.137e-05 0.00% Castro::check_for_nan() 20 2.06e-05 2.465e-05 3.103e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.725e-05 1.927e-05 2.346e-05 0.00% Castro::post_init() 1 1.458e-05 1.669e-05 2.209e-05 0.00% Castro::post_timestep() 10 1.21e-05 1.424e-05 1.585e-05 0.00% Gravity::swapTimeLevels() 10 8.36e-06 1.234e-05 1.524e-05 0.00% Gravity::set_mass_offset() 10 9.196e-06 1.101e-05 1.27e-05 0.00% Amr::initSubcycle() 1 9.973e-06 1.041e-05 1.155e-05 0.00% Castro::create_source_corrector() 10 8.341e-06 9.497e-06 1.13e-05 0.00% Castro::computeNewDt() 9 7.735e-06 8.984e-06 9.825e-06 0.00% Castro::FluxRegCrseInit 10 6.18e-06 8.004e-06 8.819e-06 0.00% Castro::retry_advance_ctu() 10 6.835e-06 7.433e-06 8.089e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.774e-06 5.086e-06 7.191e-06 0.00% Amr::init() 1 1.716e-06 2.984e-06 6.635e-06 0.00% Castro::computeInitialDt() 2 2.642e-06 4.039e-06 5.365e-06 0.00% Castro::post_regrid() 1 1.638e-06 3.419e-06 5.231e-06 0.00% Amr::InitializeInit() 1 1.763e-06 2.352e-06 4.913e-06 0.00% Castro::FluxRegFineAdd() 10 2.057e-06 2.693e-06 3.943e-06 0.00% Amr::initialInit() 1 1.178e-06 1.658e-06 1.979e-06 0.00% DistributionMapping::Distribute() 1 8.37e-07 1.014e-06 1.718e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.506 3.507 3.507 100.00% Amr::coarseTimeStep() 10 3.305 3.305 3.305 94.25% Amr::timeStep() 10 3.291 3.292 3.292 93.87% Castro::advance() 10 3.275 3.276 3.276 93.41% Castro::subcycle_advance_ctu() 10 3.192 3.195 3.197 91.17% Castro::do_advance_ctu() 10 3.192 3.195 3.197 91.16% Castro::construct_ctu_hydro_source() 10 2.442 2.448 2.452 69.93% Gravity::make_radial_gravity() 21 0.3039 0.317 0.33 9.41% AmrLevel::FillPatch() 41 0.1864 0.2072 0.2194 6.26% Castro::construct_old_gravity() 10 0.1936 0.1997 0.21 5.99% Gravity::get_old_grav_vector() 10 0.1929 0.1991 0.2095 5.97% Gravity::get_new_grav_vector() 11 0.2046 0.2065 0.208 5.93% Amr::init() 1 0.1889 0.1891 0.1891 5.39% FillPatchIterator::Initialize 41 0.1589 0.1755 0.1871 5.34% Castro::construct_new_gravity() 10 0.1824 0.1835 0.1844 5.26% Amr::initialInit() 1 0.1737 0.174 0.1741 4.96% Castro::initialize_do_advance() 10 0.152 0.1644 0.1713 4.89% FillPatchIterator::FillFromLevel0() 41 0.1191 0.1325 0.153 4.36% FillPatchSingleLevel 41 0.119 0.1324 0.1529 4.36% Amr::InitializeInit() 1 0.06755 0.106 0.1471 4.20% Amr::defBaseLevel() 1 0.06755 0.106 0.1471 4.20% check_for_negative_density() 10 0.02578 0.07849 0.1303 3.71% Castro::initData() 1 0.0513 0.08951 0.1291 3.68% FabArray::ParallelCopy() 41 0.08242 0.09929 0.122 3.48% Castro::expand_state() 10 0.1019 0.1098 0.1158 3.30% Castro::clean_state() 62 0.1139 0.1145 0.1155 3.29% Castro::estTimeStep() 21 0.0231 0.06888 0.1102 3.14% Castro::do_old_sources() 10 0.09258 0.1016 0.107 3.05% Amr::FinalizeInit() 1 0.02657 0.06794 0.1065 3.04% amrex::Copy() 193 0.06627 0.0828 0.09962 2.84% FabArray::ParallelCopy_finish() 41 0.0382 0.05779 0.08794 2.51% Castro::computeInitialDt() 2 0.002374 0.04353 0.08202 2.34% FabArray::setVal() 143 0.06988 0.07395 0.08191 2.34% Castro::initialize_advance() 10 0.07526 0.07708 0.08008 2.28% Castro::computeTemp() 63 0.06648 0.06763 0.06902 1.97% Castro::do_new_sources() 10 0.05984 0.06272 0.06665 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04693 0.04803 0.04885 1.39% Castro::reset_internal_energy(Fab) 1008 0.04662 0.04775 0.04857 1.38% FabArray::ParallelCopy_nowait() 41 0.03398 0.04143 0.04413 1.26% Castro::normalize_species() 62 0.04103 0.04147 0.04234 1.21% StateDataPhysBCFunct::() 41 0.0298 0.03302 0.03651 1.04% StateData::FillBoundary(geom) 41 0.0297 0.0329 0.03641 1.04% Castro::construct_new_source() 50 0.02708 0.02981 0.03156 0.90% Gravity::interpolate_monopole_grav() 21 0.02754 0.02945 0.03066 0.87% Castro::construct_new_gravity_source() 10 0.02112 0.02335 0.02499 0.71% Castro::post_init() 1 0.02393 0.02416 0.02432 0.69% Amr::writePlotFile() 2 0.02247 0.02259 0.0228 0.65% Castro::finalize_do_advance() 10 0.01201 0.01658 0.01974 0.56% Castro::post_timestep() 10 0.01539 0.01576 0.01608 0.46% Castro::apply_source_to_state() 20 0.01013 0.01257 0.01386 0.40% FabArray::Saxpy() 20 0.01009 0.01252 0.0138 0.39% VisMF::Write(FabArray) 2 0.008779 0.009695 0.01352 0.39% Castro::Castro() 1 0.01076 0.01095 0.0119 0.34% Castro::check_for_nan() 20 0.009814 0.01077 0.01172 0.33% MultiFab::contains_nan() 20 0.009789 0.01074 0.0117 0.33% FabArray::setDomainBndry() 41 0.00655 0.009453 0.01073 0.31% Castro::construct_old_source() 50 0.006455 0.009322 0.01022 0.29% Castro::construct_old_gravity_source() 10 0.00639 0.009249 0.01014 0.29% Castro::computeNewDt() 9 0.009925 0.00993 0.009934 0.28% Castro::initMFs() 1 0.006361 0.006661 0.008504 0.24% Castro::enforce_min_density() 62 0.0057 0.006105 0.006494 0.19% AmrLevel::AmrLevel(dm) 1 0.005281 0.005413 0.006082 0.17% StateData::define() 4 0.005262 0.005394 0.006059 0.17% Castro::swap_state_time_levels() 10 0.003133 0.00423 0.004419 0.13% Castro::finalize_advance() 10 0.003149 0.00339 0.003577 0.10% Castro::buildMetrics() 1 0.001623 0.001689 0.002022 0.06% Castro::post_regrid() 1 0.00148 0.001583 0.001642 0.05% Amr::InitAmr() 1 0.000352 0.0003788 0.0004867 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.174e-05 0.0001155 0.0001404 0.00% DistributionMapping::LeastUsedCPUs() 1 7.127e-06 0.0001094 0.0001324 0.00% Castro::enforce_consistent_e() 1 7.749e-05 8.875e-05 0.000105 0.00% FabArrayBase::getCPC() 41 6.888e-05 7.798e-05 9.318e-05 0.00% Amr::writeSmallPlotFile() 1 3.136e-05 4.959e-05 7.086e-05 0.00% Castro::enforce_speed_limit() 62 2.483e-05 2.892e-05 3.233e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.526e-05 3.166e-05 0.00% Gravity::swapTimeLevels() 10 8.36e-06 1.234e-05 1.524e-05 0.00% Gravity::set_mass_offset() 10 9.196e-06 1.101e-05 1.27e-05 0.00% Amr::initSubcycle() 1 9.973e-06 1.041e-05 1.155e-05 0.00% Castro::create_source_corrector() 10 8.341e-06 9.497e-06 1.13e-05 0.00% Castro::FluxRegCrseInit 10 6.18e-06 8.004e-06 8.819e-06 0.00% Castro::retry_advance_ctu() 10 6.835e-06 7.433e-06 8.089e-06 0.00% Castro::FluxRegFineAdd() 10 2.057e-06 2.693e-06 3.943e-06 0.00% DistributionMapping::Distribute() 1 8.37e-07 1.014e-06 1.718e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-4-ga8bc0bfbcf10) finalized