Initializing AMReX (24.02-5-g928a485af294)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-5-g928a485af294) initialized Starting run at 06:43:16 UTC on 2024-02-07. Successfully read inputs file ... Castro git describe: 24.02-3-g09b5fe593 AMReX git describe: 24.02-5-g928a485af Microphysics git describe: 24.02-6-g49fba8d7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013175946 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365882852 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353992726 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329482469 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324730024 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.324326622 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.368270643 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310133841 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307200629 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30723329 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308473637 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007559009 seconds Ending run at 06:43:20 UTC on 2024-02-07. Run time = 3.526917758 Run time without initialization = 3.3128059 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.526 ... 3.527 ... 3.527 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2729 2.3455 2.3922 67.82% Gravity::make_radial_gravity() 21 0.2887 0.2971 0.3143 8.91% check_for_negative_density() 10 0.03747 0.08702 0.162 4.59% Castro::initData() 1 0.04875 0.09621 0.1457 4.13% Castro::estTimeStep() 21 0.02614 0.08505 0.1386 3.93% FabArray::ParallelCopy_finish() 41 0.03961 0.0666 0.1046 2.96% FabArray::setVal() 143 0.06307 0.07077 0.08593 2.44% amrex::Copy() 193 0.06261 0.07555 0.08484 2.41% Castro::reset_internal_energy(Fab) 1008 0.04461 0.04731 0.04946 1.40% FabArray::ParallelCopy_nowait() 41 0.03332 0.04056 0.04367 1.24% Castro::normalize_species() 62 0.04099 0.04196 0.04293 1.22% FillPatchIterator::Initialize 41 0.02607 0.03158 0.03742 1.06% StateData::FillBoundary(geom) 41 0.02934 0.03169 0.03462 0.98% Gravity::interpolate_monopole_grav() 21 0.028 0.02921 0.03022 0.86% Castro::construct_new_gravity_source() 10 0.02103 0.02353 0.02536 0.72% Castro::initialize_do_advance() 10 0.01106 0.01816 0.02409 0.68% Castro::computeTemp() 63 0.01792 0.01939 0.02034 0.58% Castro::initialize_advance() 10 0.003911 0.01048 0.01405 0.40% FabArray::Saxpy() 20 0.01049 0.01257 0.01341 0.38% FabArray::setDomainBndry() 41 0.006314 0.009532 0.01216 0.34% VisMF::Write(FabArray) 2 0.008776 0.009368 0.01211 0.34% MultiFab::contains_nan() 20 0.009416 0.01068 0.01201 0.34% Amr::writePlotFile() 2 0.006161 0.009015 0.0107 0.30% Castro::construct_old_gravity_source() 10 0.006566 0.009295 0.00999 0.28% Castro::initMFs() 1 0.006365 0.007595 0.009753 0.28% StateData::define() 4 0.005291 0.006214 0.007917 0.22% Castro::construct_new_source() 50 0.005687 0.006392 0.006987 0.20% Castro::enforce_min_density() 62 0.005696 0.006053 0.006294 0.18% Castro::swap_state_time_levels() 10 0.003112 0.004154 0.004915 0.14% main() 1 0.003621 0.004316 0.004798 0.14% Gravity::get_new_grav_vector() 11 0.002791 0.003387 0.004017 0.11% Gravity::get_old_grav_vector() 10 0.001417 0.001866 0.00229 0.06% Castro::buildMetrics() 1 0.001499 0.00178 0.00229 0.06% Amr::coarseTimeStep() 10 0.001122 0.001599 0.00209 0.06% Castro::finalize_do_advance() 10 0.0006109 0.001098 0.001367 0.04% AmrLevel::FillPatch() 41 0.000745 0.0008452 0.0009455 0.03% Amr::InitAmr() 1 0.0003566 0.0004612 0.0006659 0.02% Amr::timeStep() 10 0.000152 0.0002188 0.0004703 0.01% DistributionMapping::LeastUsedCPUs() 1 6.915e-06 0.0002399 0.000347 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002755 0.0002874 0.0002987 0.01% Castro::clean_state() 62 0.0001353 0.0001533 0.0001833 0.01% Castro::do_advance_ctu() 10 0.0001146 0.0001382 0.0001522 0.00% StateDataPhysBCFunct::() 41 9.084e-05 0.0001166 0.0001373 0.00% Castro::enforce_consistent_e() 1 8.582e-05 9.717e-05 0.0001363 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001026 0.0001085 0.0001168 0.00% Castro::finalize_advance() 10 7.622e-05 9.127e-05 0.0001087 0.00% Castro::do_old_sources() 10 5.85e-05 8.458e-05 9.275e-05 0.00% Castro::do_new_sources() 10 4.949e-05 7.762e-05 9.153e-05 0.00% FabArray::ParallelCopy() 41 7.17e-05 7.827e-05 8.735e-05 0.00% Castro::subcycle_advance_ctu() 10 3.719e-05 5.303e-05 7.952e-05 0.00% FillPatchSingleLevel 41 6.682e-05 7.188e-05 7.626e-05 0.00% Castro::Castro() 1 5.191e-05 6.576e-05 7.562e-05 0.00% Castro::construct_old_source() 50 4.909e-05 6.552e-05 7.289e-05 0.00% FabArrayBase::getCPC() 41 4.564e-05 5.701e-05 6.953e-05 0.00% Amr::FinalizeInit() 1 3.874e-06 1.247e-05 6.737e-05 0.00% Castro::advance() 10 4.373e-05 5.484e-05 6.675e-05 0.00% Castro::construct_old_gravity() 10 3.185e-05 4.211e-05 6.543e-05 0.00% Amr::writeSmallPlotFile() 1 3.181e-05 5.436e-05 6.352e-05 0.00% Castro::expand_state() 10 1.921e-05 2.671e-05 5.982e-05 0.00% Castro::apply_source_to_state() 20 3.858e-05 4.274e-05 5.133e-05 0.00% Castro::computeNewDt() 9 6.991e-06 1.533e-05 4.744e-05 0.00% Castro::construct_new_gravity() 10 3.107e-05 3.559e-05 4.505e-05 0.00% Castro::enforce_speed_limit() 62 2.601e-05 3.012e-05 3.608e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.475e-05 3.02e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.44e-05 2.059e-05 2.923e-05 0.00% Castro::check_for_nan() 20 2.052e-05 2.265e-05 2.851e-05 0.00% Amr::defBaseLevel() 1 1.713e-05 1.952e-05 2.229e-05 0.00% Gravity::swapTimeLevels() 10 8.511e-06 1.162e-05 2.09e-05 0.00% Amr::initSubcycle() 1 1.02e-05 1.305e-05 1.913e-05 0.00% Castro::post_init() 1 1.358e-05 1.535e-05 1.657e-05 0.00% Castro::post_timestep() 10 1.254e-05 1.362e-05 1.555e-05 0.00% Gravity::set_mass_offset() 10 9.083e-06 1.076e-05 1.431e-05 0.00% Castro::create_source_corrector() 10 6.79e-06 9.396e-06 1.115e-05 0.00% Castro::FluxRegCrseInit 10 6.769e-06 7.78e-06 8.353e-06 0.00% Castro::retry_advance_ctu() 10 6.142e-06 6.988e-06 7.758e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.706e-06 5.089e-06 7.336e-06 0.00% Amr::InitializeInit() 1 1.895e-06 2.451e-06 4.906e-06 0.00% Castro::post_regrid() 1 1.596e-06 3.378e-06 4.838e-06 0.00% Castro::computeInitialDt() 2 3.057e-06 3.907e-06 4.78e-06 0.00% Castro::FluxRegFineAdd() 10 1.797e-06 2.42e-06 2.905e-06 0.00% Amr::init() 1 1.828e-06 2.135e-06 2.458e-06 0.00% Amr::initialInit() 1 1.24e-06 1.533e-06 1.949e-06 0.00% DistributionMapping::Distribute() 1 8.77e-07 1.066e-06 1.331e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.527 3.527 100.00% Amr::coarseTimeStep() 10 3.301 3.301 3.301 93.58% Amr::timeStep() 10 3.284 3.284 3.285 93.14% Castro::advance() 10 3.268 3.269 3.269 92.68% Castro::subcycle_advance_ctu() 10 3.179 3.192 3.202 90.77% Castro::do_advance_ctu() 10 3.179 3.192 3.202 90.77% Castro::construct_ctu_hydro_source() 10 2.45 2.453 2.456 69.63% Gravity::make_radial_gravity() 21 0.3042 0.3127 0.3268 9.26% AmrLevel::FillPatch() 41 0.1793 0.2098 0.2285 6.48% Amr::init() 1 0.2132 0.2135 0.2136 6.06% Gravity::get_new_grav_vector() 11 0.2035 0.206 0.2075 5.88% Castro::construct_old_gravity() 10 0.182 0.1892 0.2018 5.72% Gravity::get_old_grav_vector() 10 0.1814 0.1885 0.2013 5.71% Amr::initialInit() 1 0.1996 0.2002 0.2006 5.69% FillPatchIterator::Initialize 41 0.1499 0.1804 0.2001 5.67% Castro::initialize_do_advance() 10 0.1645 0.1788 0.1888 5.35% Castro::construct_new_gravity() 10 0.1791 0.1808 0.182 5.16% Amr::InitializeInit() 1 0.06774 0.1179 0.1712 4.86% Amr::defBaseLevel() 1 0.06774 0.1179 0.1712 4.85% FillPatchIterator::FillFromLevel0() 41 0.1124 0.1393 0.1677 4.75% FillPatchSingleLevel 41 0.1123 0.1392 0.1676 4.75% check_for_negative_density() 10 0.03747 0.08702 0.162 4.59% Castro::initData() 1 0.0525 0.1002 0.1494 4.24% Castro::estTimeStep() 21 0.02614 0.08505 0.1386 3.93% FabArray::ParallelCopy() 41 0.08031 0.1073 0.138 3.91% Castro::expand_state() 10 0.1066 0.1242 0.1354 3.84% Amr::FinalizeInit() 1 0.02865 0.08229 0.1324 3.75% Castro::clean_state() 62 0.1099 0.1142 0.1176 3.33% Castro::computeInitialDt() 2 0.002297 0.05587 0.106 3.01% FabArray::ParallelCopy_finish() 41 0.03961 0.0666 0.1046 2.96% Castro::do_old_sources() 10 0.09032 0.09479 0.09841 2.79% Castro::initialize_advance() 10 0.06308 0.07296 0.08606 2.44% FabArray::setVal() 143 0.06307 0.07077 0.08593 2.44% amrex::Copy() 193 0.06261 0.07555 0.08484 2.41% Castro::computeTemp() 63 0.06285 0.06699 0.0701 1.99% Castro::do_new_sources() 10 0.05911 0.06276 0.06759 1.92% Castro::reset_internal_energy(MultiFab) 63 0.0449 0.0476 0.04976 1.41% Castro::reset_internal_energy(Fab) 1008 0.04461 0.04731 0.04946 1.40% FabArray::ParallelCopy_nowait() 41 0.0334 0.04064 0.04375 1.24% Castro::normalize_species() 62 0.04099 0.04196 0.04293 1.22% StateDataPhysBCFunct::() 41 0.02946 0.0318 0.03471 0.98% StateData::FillBoundary(geom) 41 0.02934 0.03169 0.03462 0.98% Castro::construct_new_source() 50 0.02672 0.02993 0.03196 0.91% Gravity::interpolate_monopole_grav() 21 0.028 0.02921 0.03022 0.86% Castro::post_init() 1 0.02558 0.02606 0.0264 0.75% Castro::construct_new_gravity_source() 10 0.02103 0.02353 0.02536 0.72% Amr::writePlotFile() 2 0.02063 0.02095 0.02129 0.60% Castro::finalize_do_advance() 10 0.0118 0.01706 0.02061 0.58% Castro::post_timestep() 10 0.01522 0.0155 0.01592 0.45% Castro::Castro() 1 0.009673 0.01122 0.01383 0.39% Castro::apply_source_to_state() 20 0.01053 0.01261 0.01346 0.38% FabArray::Saxpy() 20 0.01049 0.01257 0.01341 0.38% Castro::computeNewDt() 9 0.0132 0.01323 0.01332 0.38% FabArray::setDomainBndry() 41 0.006314 0.009532 0.01216 0.34% VisMF::Write(FabArray) 2 0.008776 0.009368 0.01211 0.34% Castro::check_for_nan() 20 0.009437 0.0107 0.01203 0.34% MultiFab::contains_nan() 20 0.009416 0.01068 0.01201 0.34% Castro::construct_old_source() 50 0.006616 0.009361 0.01006 0.29% Castro::construct_old_gravity_source() 10 0.006566 0.009295 0.00999 0.28% Castro::initMFs() 1 0.006365 0.007595 0.009753 0.28% AmrLevel::AmrLevel(dm) 1 0.005309 0.006235 0.007945 0.23% StateData::define() 4 0.005291 0.006214 0.007917 0.22% Castro::enforce_min_density() 62 0.005696 0.006053 0.006294 0.18% Castro::swap_state_time_levels() 10 0.003112 0.004154 0.004915 0.14% Castro::finalize_advance() 10 0.00315 0.003339 0.003506 0.10% Castro::buildMetrics() 1 0.001621 0.001933 0.002501 0.07% Castro::post_regrid() 1 0.001535 0.001631 0.001795 0.05% Amr::InitAmr() 1 0.0003683 0.0004742 0.000685 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.279e-05 0.0002461 0.0003552 0.01% DistributionMapping::LeastUsedCPUs() 1 6.915e-06 0.0002399 0.000347 0.01% Castro::enforce_consistent_e() 1 8.582e-05 9.717e-05 0.0001363 0.00% FabArrayBase::getCPC() 41 6.813e-05 8.175e-05 9.973e-05 0.00% Amr::writeSmallPlotFile() 1 3.181e-05 5.436e-05 6.352e-05 0.00% Castro::enforce_speed_limit() 62 2.601e-05 3.012e-05 3.608e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.475e-05 3.02e-05 0.00% Gravity::swapTimeLevels() 10 8.511e-06 1.162e-05 2.09e-05 0.00% Amr::initSubcycle() 1 1.02e-05 1.305e-05 1.913e-05 0.00% Gravity::set_mass_offset() 10 9.083e-06 1.076e-05 1.431e-05 0.00% Castro::create_source_corrector() 10 6.79e-06 9.396e-06 1.115e-05 0.00% Castro::FluxRegCrseInit 10 6.769e-06 7.78e-06 8.353e-06 0.00% Castro::retry_advance_ctu() 10 6.142e-06 6.988e-06 7.758e-06 0.00% Castro::FluxRegFineAdd() 10 1.797e-06 2.42e-06 2.905e-06 0.00% DistributionMapping::Distribute() 1 8.77e-07 1.066e-06 1.331e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-5-g928a485af294) finalized