Initializing AMReX (24.02-7-g798ca3356d16)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-7-g798ca3356d16) initialized Starting run at 21:43:34 UTC on 2024-02-08. Successfully read inputs file ... Castro git describe: 24.02-4-g90252eb22 AMReX git describe: 24.02-7-g798ca3356 Microphysics git describe: 24.02-10-gb5d1a91a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018083319 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.419829873 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351195545 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337748037 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335422573 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361899927 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.331199368 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310054762 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308912836 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311201077 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309203064 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007575464 seconds Ending run at 21:43:38 UTC on 2024-02-08. Run time = 3.587520992 Run time without initialization = 3.390132505 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.587 ... 3.587 ... 3.588 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3179 2.3831 2.4222 67.52% Gravity::make_radial_gravity() 21 0.312 0.3209 0.3334 9.29% check_for_negative_density() 10 0.05685 0.09669 0.1645 4.58% Castro::initData() 1 0.04893 0.09328 0.1195 3.33% Castro::estTimeStep() 21 0.02359 0.0556 0.09556 2.66% amrex::Copy() 193 0.07658 0.08118 0.08773 2.45% FabArray::setVal() 143 0.0659 0.07347 0.08282 2.31% FabArray::ParallelCopy_finish() 41 0.04636 0.05701 0.06938 1.93% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04875 0.05219 1.45% FabArray::ParallelCopy_nowait() 41 0.04055 0.04269 0.04531 1.26% Castro::normalize_species() 62 0.04154 0.04257 0.04471 1.25% FillPatchIterator::Initialize 41 0.02818 0.0337 0.03722 1.04% StateData::FillBoundary(geom) 41 0.02987 0.0345 0.03712 1.03% Gravity::interpolate_monopole_grav() 21 0.02765 0.02973 0.03145 0.88% Castro::construct_new_gravity_source() 10 0.0224 0.02486 0.02764 0.77% Castro::computeTemp() 63 0.01851 0.0201 0.02127 0.59% Castro::initialize_do_advance() 10 0.0177 0.01934 0.02123 0.59% Castro::initialize_advance() 10 0.009592 0.01214 0.01479 0.41% FabArray::Saxpy() 20 0.01282 0.01362 0.01461 0.41% VisMF::Write(FabArray) 2 0.008834 0.01008 0.01438 0.40% Amr::writePlotFile() 2 0.008862 0.01144 0.01337 0.37% FabArray::setDomainBndry() 41 0.007422 0.0106 0.0127 0.35% MultiFab::contains_nan() 20 0.01003 0.01092 0.01179 0.33% Castro::construct_old_gravity_source() 10 0.0102 0.01042 0.0108 0.30% Castro::initMFs() 1 0.006366 0.007403 0.01049 0.29% StateData::define() 4 0.005252 0.00595 0.008025 0.22% Castro::enforce_min_density() 62 0.006 0.006227 0.006592 0.18% Castro::construct_new_source() 50 0.006185 0.006397 0.006506 0.18% Castro::swap_state_time_levels() 10 0.003289 0.004782 0.00649 0.18% Gravity::get_new_grav_vector() 11 0.003156 0.004172 0.005691 0.16% main() 1 0.004226 0.004686 0.005093 0.14% Amr::coarseTimeStep() 10 0.001245 0.001952 0.002534 0.07% Gravity::get_old_grav_vector() 10 0.001607 0.002097 0.002335 0.07% Castro::buildMetrics() 1 0.001515 0.001731 0.002269 0.06% Castro::finalize_do_advance() 10 0.001001 0.001168 0.001337 0.04% AmrLevel::FillPatch() 41 0.0007793 0.0009104 0.001039 0.03% Amr::InitAmr() 1 0.000352 0.0004543 0.0006834 0.02% Amr::timeStep() 10 0.0001687 0.0002202 0.0004259 0.01% DistributionMapping::LeastUsedCPUs() 1 6.376e-06 0.0002521 0.0003566 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002724 0.0002966 0.0003242 0.01% Castro::clean_state() 62 0.0001544 0.0001616 0.0001691 0.00% Castro::do_advance_ctu() 10 0.0001277 0.0001413 0.000161 0.00% StateDataPhysBCFunct::() 41 9.114e-05 0.0001139 0.0001431 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001092 0.0001191 0.0001422 0.00% Castro::enforce_consistent_e() 1 8.217e-05 0.0001001 0.0001331 0.00% Castro::do_old_sources() 10 7.721e-05 9.375e-05 0.0001126 0.00% Castro::finalize_advance() 10 7.916e-05 9.488e-05 0.0001068 0.00% Castro::construct_old_source() 50 6.894e-05 8.15e-05 0.0001037 0.00% FabArray::ParallelCopy() 41 7.56e-05 8.306e-05 9.654e-05 0.00% FillPatchSingleLevel 41 6.681e-05 8.008e-05 9.439e-05 0.00% Castro::Castro() 1 6.009e-05 7.117e-05 8.061e-05 0.00% FabArrayBase::getCPC() 41 4.34e-05 5.236e-05 7.568e-05 0.00% Castro::advance() 10 3.858e-05 4.982e-05 7.277e-05 0.00% Castro::do_new_sources() 10 6.209e-05 6.639e-05 7.092e-05 0.00% Amr::writeSmallPlotFile() 1 3.202e-05 4.906e-05 6.869e-05 0.00% Amr::FinalizeInit() 1 3.636e-06 1.256e-05 6.555e-05 0.00% Castro::subcycle_advance_ctu() 10 3.816e-05 4.864e-05 5.846e-05 0.00% Castro::apply_source_to_state() 20 3.712e-05 4.526e-05 5.271e-05 0.00% Castro::construct_new_gravity() 10 3.377e-05 4.391e-05 4.989e-05 0.00% Castro::construct_old_gravity() 10 3.149e-05 3.999e-05 4.414e-05 0.00% FabArrayBase::CPC::define() 2 2.213e-05 2.697e-05 3.585e-05 0.00% Castro::enforce_speed_limit() 62 2.62e-05 3.003e-05 3.277e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.622e-05 2.158e-05 2.952e-05 0.00% Castro::expand_state() 10 1.98e-05 2.48e-05 2.903e-05 0.00% Amr::defBaseLevel() 1 1.742e-05 2.256e-05 2.868e-05 0.00% Castro::post_timestep() 10 1.253e-05 1.718e-05 2.602e-05 0.00% Castro::check_for_nan() 20 1.911e-05 2.244e-05 2.402e-05 0.00% Gravity::swapTimeLevels() 10 9.257e-06 1.253e-05 2.129e-05 0.00% Castro::post_init() 1 1.421e-05 1.793e-05 2.059e-05 0.00% Amr::initSubcycle() 1 9.976e-06 1.231e-05 1.84e-05 0.00% Gravity::set_mass_offset() 10 9.987e-06 1.207e-05 1.326e-05 0.00% Castro::create_source_corrector() 10 8.482e-06 9.82e-06 1.175e-05 0.00% Castro::computeNewDt() 9 7.58e-06 8.751e-06 1.108e-05 0.00% Castro::FluxRegCrseInit 10 6.151e-06 7.626e-06 8.991e-06 0.00% Castro::retry_advance_ctu() 10 6.458e-06 7.491e-06 8.693e-06 0.00% Amr::init() 1 1.842e-06 2.86e-06 7.571e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.809e-06 5.652e-06 6.891e-06 0.00% Castro::computeInitialDt() 2 3.758e-06 4.556e-06 5.591e-06 0.00% Castro::post_regrid() 1 2.152e-06 3.738e-06 5.28e-06 0.00% Amr::InitializeInit() 1 1.636e-06 2.538e-06 5.111e-06 0.00% Castro::FluxRegFineAdd() 10 2.053e-06 2.443e-06 3.375e-06 0.00% Amr::initialInit() 1 1.304e-06 1.621e-06 2.018e-06 0.00% DistributionMapping::Distribute() 1 9.34e-07 1.201e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.587 3.587 3.588 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 94.15% Amr::timeStep() 10 3.364 3.365 3.365 93.81% Castro::advance() 10 3.348 3.349 3.349 93.36% Castro::subcycle_advance_ctu() 10 3.264 3.27 3.275 91.28% Castro::do_advance_ctu() 10 3.264 3.27 3.275 91.28% Castro::construct_ctu_hydro_source() 10 2.497 2.501 2.504 69.80% Gravity::make_radial_gravity() 21 0.3289 0.3375 0.3478 9.70% AmrLevel::FillPatch() 41 0.1948 0.2119 0.2285 6.37% Gravity::get_new_grav_vector() 11 0.2201 0.2234 0.2256 6.29% Castro::construct_old_gravity() 10 0.1941 0.2012 0.2099 5.85% Gravity::get_old_grav_vector() 10 0.1934 0.2005 0.2091 5.83% Amr::init() 1 0.1965 0.1968 0.1969 5.49% FillPatchIterator::Initialize 41 0.1631 0.179 0.1942 5.41% Castro::construct_new_gravity() 10 0.1865 0.1878 0.1888 5.26% Castro::initialize_do_advance() 10 0.1675 0.178 0.186 5.18% Amr::initialInit() 1 0.1785 0.1803 0.181 5.05% check_for_negative_density() 10 0.05685 0.09669 0.1645 4.58% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1347 0.1475 4.11% FillPatchSingleLevel 41 0.1251 0.1346 0.1474 4.11% Amr::InitializeInit() 1 0.06906 0.1153 0.1398 3.90% Amr::defBaseLevel() 1 0.06906 0.1153 0.1398 3.90% Castro::expand_state() 10 0.109 0.1207 0.1316 3.67% Castro::initData() 1 0.05296 0.09752 0.1236 3.45% Castro::clean_state() 62 0.1135 0.1171 0.1232 3.43% FabArray::ParallelCopy() 41 0.08834 0.09987 0.1117 3.11% Amr::FinalizeInit() 1 0.04058 0.06496 0.1094 3.05% Castro::do_old_sources() 10 0.09577 0.09896 0.1027 2.86% Castro::estTimeStep() 21 0.02359 0.0556 0.09556 2.66% amrex::Copy() 193 0.07658 0.08118 0.08773 2.45% FabArray::setVal() 143 0.0659 0.07347 0.08282 2.31% Castro::initialize_advance() 10 0.07041 0.07516 0.08081 2.25% Castro::do_new_sources() 10 0.06006 0.067 0.0744 2.07% Castro::computeInitialDt() 2 0.00352 0.02795 0.07418 2.07% Castro::computeTemp() 63 0.06577 0.06915 0.07376 2.06% FabArray::ParallelCopy_finish() 41 0.04636 0.05701 0.06938 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04726 0.04905 0.0525 1.46% Castro::reset_internal_energy(Fab) 1008 0.04697 0.04875 0.05219 1.45% FabArray::ParallelCopy_nowait() 41 0.04065 0.04277 0.04538 1.26% Castro::normalize_species() 62 0.04154 0.04257 0.04471 1.25% Castro::post_init() 1 0.03535 0.03694 0.03755 1.05% StateDataPhysBCFunct::() 41 0.02997 0.03462 0.03722 1.04% StateData::FillBoundary(geom) 41 0.02987 0.0345 0.03712 1.03% Castro::construct_new_source() 50 0.02888 0.03126 0.03403 0.95% Gravity::interpolate_monopole_grav() 21 0.02765 0.02973 0.03145 0.88% Castro::construct_new_gravity_source() 10 0.0224 0.02486 0.02764 0.77% Castro::finalize_do_advance() 10 0.01215 0.01977 0.02729 0.76% Amr::writePlotFile() 2 0.02313 0.02413 0.0259 0.72% Castro::post_timestep() 10 0.01542 0.01565 0.01597 0.45% Castro::apply_source_to_state() 20 0.01287 0.01367 0.01465 0.41% Castro::Castro() 1 0.01053 0.01155 0.01461 0.41% FabArray::Saxpy() 20 0.01282 0.01362 0.01461 0.41% VisMF::Write(FabArray) 2 0.008834 0.01008 0.01438 0.40% FabArray::setDomainBndry() 41 0.007422 0.0106 0.0127 0.35% Castro::check_for_nan() 20 0.01006 0.01094 0.01181 0.33% MultiFab::contains_nan() 20 0.01003 0.01092 0.01179 0.33% Castro::construct_old_source() 50 0.01027 0.0105 0.0109 0.30% Castro::construct_old_gravity_source() 10 0.0102 0.01042 0.0108 0.30% Castro::initMFs() 1 0.006366 0.007403 0.01049 0.29% Castro::computeNewDt() 9 0.009043 0.009054 0.009061 0.25% AmrLevel::AmrLevel(dm) 1 0.00527 0.005971 0.008055 0.22% StateData::define() 4 0.005252 0.00595 0.008025 0.22% Castro::enforce_min_density() 62 0.006 0.006227 0.006592 0.18% Castro::swap_state_time_levels() 10 0.003289 0.004782 0.00649 0.18% Castro::finalize_advance() 10 0.003103 0.003537 0.004037 0.11% Castro::post_regrid() 1 0.001478 0.001889 0.002939 0.08% Castro::buildMetrics() 1 0.001648 0.001881 0.002479 0.07% Amr::InitAmr() 1 0.0003626 0.0004666 0.0007014 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.147e-05 0.000259 0.0003642 0.01% DistributionMapping::LeastUsedCPUs() 1 6.376e-06 0.0002521 0.0003566 0.01% Castro::enforce_consistent_e() 1 8.217e-05 0.0001001 0.0001331 0.00% FabArrayBase::getCPC() 41 6.577e-05 7.932e-05 0.0001115 0.00% Amr::writeSmallPlotFile() 1 3.202e-05 4.906e-05 6.869e-05 0.00% FabArrayBase::CPC::define() 2 2.213e-05 2.697e-05 3.585e-05 0.00% Castro::enforce_speed_limit() 62 2.62e-05 3.003e-05 3.277e-05 0.00% Gravity::swapTimeLevels() 10 9.257e-06 1.253e-05 2.129e-05 0.00% Amr::initSubcycle() 1 9.976e-06 1.231e-05 1.84e-05 0.00% Gravity::set_mass_offset() 10 9.987e-06 1.207e-05 1.326e-05 0.00% Castro::create_source_corrector() 10 8.482e-06 9.82e-06 1.175e-05 0.00% Castro::FluxRegCrseInit 10 6.151e-06 7.626e-06 8.991e-06 0.00% Castro::retry_advance_ctu() 10 6.458e-06 7.491e-06 8.693e-06 0.00% Castro::FluxRegFineAdd() 10 2.053e-06 2.443e-06 3.375e-06 0.00% DistributionMapping::Distribute() 1 9.34e-07 1.201e-06 1.392e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-7-g798ca3356d16) finalized