Initializing AMReX (24.02-6-g4fc7ef352fe1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-6-g4fc7ef352fe1) initialized Starting run at 06:34:05 UTC on 2024-02-08. Successfully read inputs file ... Castro git describe: 24.02-3-g09b5fe593 AMReX git describe: 24.02-6-g4fc7ef352 Microphysics git describe: 24.02-7-g0ad950aa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013377916 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360391096 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335580337 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332845381 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.360771357 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327554172 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.372504049 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315927171 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31117114 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311673622 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31182925 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007563469 seconds Ending run at 06:34:08 UTC on 2024-02-08. Run time = 3.542052174 Run time without initialization = 3.353767342 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.54 ... 3.541 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3245 2.3685 2.4307 68.62% Gravity::make_radial_gravity() 21 0.2913 0.3087 0.3195 9.02% check_for_negative_density() 10 0.03354 0.09787 0.1436 4.05% Castro::initData() 1 0.04731 0.08573 0.1275 3.60% Castro::estTimeStep() 21 0.03145 0.06916 0.112 3.16% amrex::Copy() 193 0.06908 0.07995 0.09307 2.63% FabArray::setVal() 143 0.06747 0.07277 0.08135 2.30% FabArray::ParallelCopy_finish() 41 0.03806 0.0494 0.07111 2.01% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04769 0.0498 1.41% Castro::normalize_species() 62 0.04133 0.04268 0.04486 1.27% FabArray::ParallelCopy_nowait() 41 0.03559 0.04111 0.04373 1.23% FillPatchIterator::Initialize 41 0.02751 0.03213 0.03507 0.99% StateData::FillBoundary(geom) 41 0.02981 0.0318 0.03463 0.98% Gravity::interpolate_monopole_grav() 21 0.02787 0.02968 0.03114 0.88% Castro::construct_new_gravity_source() 10 0.0217 0.02337 0.02539 0.72% Castro::computeTemp() 63 0.01923 0.01979 0.0206 0.58% Castro::initialize_do_advance() 10 0.01225 0.01736 0.0202 0.57% Castro::initialize_advance() 10 0.01088 0.01316 0.01566 0.44% FabArray::Saxpy() 20 0.01206 0.01296 0.01361 0.38% MultiFab::contains_nan() 20 0.009469 0.01124 0.01339 0.38% FabArray::setDomainBndry() 41 0.006167 0.01018 0.01276 0.36% VisMF::Write(FabArray) 2 0.008911 0.009477 0.01197 0.34% Castro::construct_old_gravity_source() 10 0.006675 0.009472 0.01042 0.29% Castro::initMFs() 1 0.006201 0.007332 0.01005 0.28% Amr::writePlotFile() 2 0.006273 0.0085 0.008992 0.25% StateData::define() 4 0.00517 0.005958 0.007897 0.22% Castro::construct_new_source() 50 0.005875 0.006398 0.006927 0.20% Castro::enforce_min_density() 62 0.005952 0.006149 0.006408 0.18% main() 1 0.003504 0.004475 0.005195 0.15% Castro::swap_state_time_levels() 10 0.003282 0.004368 0.004795 0.14% Gravity::get_new_grav_vector() 11 0.002896 0.003495 0.003837 0.11% Gravity::get_old_grav_vector() 10 0.001572 0.00212 0.003627 0.10% Castro::buildMetrics() 1 0.00147 0.001702 0.002269 0.06% Amr::coarseTimeStep() 10 0.0013 0.001597 0.00198 0.06% Castro::finalize_do_advance() 10 0.0004984 0.001097 0.00147 0.04% AmrLevel::FillPatch() 41 0.0007874 0.0009222 0.001154 0.03% Amr::InitAmr() 1 0.000347 0.0004532 0.0006647 0.02% Amr::timeStep() 10 0.0001488 0.0002204 0.0004484 0.01% DistributionMapping::LeastUsedCPUs() 1 7.395e-06 0.000256 0.0003777 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002688 0.0002789 0.000306 0.01% Castro::clean_state() 62 0.0001467 0.0001633 0.0002033 0.01% Castro::do_advance_ctu() 10 0.0001246 0.0001509 0.0001984 0.01% StateDataPhysBCFunct::() 41 9.559e-05 0.0001277 0.0001961 0.01% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001336 0.0001836 0.01% Castro::finalize_advance() 10 8.611e-05 9.985e-05 0.0001216 0.00% Castro::do_old_sources() 10 7.15e-05 9.146e-05 0.0001102 0.00% FabArray::ParallelCopy() 41 7.215e-05 8.367e-05 9.935e-05 0.00% Castro::enforce_consistent_e() 1 8.071e-05 8.757e-05 9.546e-05 0.00% Castro::Castro() 1 6.095e-05 7.439e-05 9.507e-05 0.00% FillPatchSingleLevel 41 7.094e-05 7.935e-05 9.433e-05 0.00% Castro::do_new_sources() 10 6.019e-05 7.075e-05 9.063e-05 0.00% Castro::construct_old_source() 50 5.539e-05 7.275e-05 8.349e-05 0.00% Amr::writeSmallPlotFile() 1 2.987e-05 5.314e-05 7.613e-05 0.00% FabArrayBase::getCPC() 41 4.491e-05 5.825e-05 7.6e-05 0.00% Amr::FinalizeInit() 1 4.073e-06 1.293e-05 7.114e-05 0.00% Castro::subcycle_advance_ctu() 10 4.088e-05 5.146e-05 6.355e-05 0.00% Castro::advance() 10 4.127e-05 5.127e-05 6.336e-05 0.00% Castro::expand_state() 10 2.391e-05 3.652e-05 6.112e-05 0.00% Castro::construct_old_gravity() 10 3.304e-05 4.423e-05 5.84e-05 0.00% Castro::apply_source_to_state() 20 4.245e-05 4.662e-05 5.502e-05 0.00% Castro::construct_new_gravity() 10 3.128e-05 3.757e-05 5.175e-05 0.00% Castro::enforce_speed_limit() 62 2.522e-05 2.807e-05 3.121e-05 0.00% Castro::check_for_nan() 20 1.949e-05 2.278e-05 2.926e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.587e-05 2.88e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.628e-05 2.069e-05 2.742e-05 0.00% Castro::post_timestep() 10 1.286e-05 1.532e-05 2.298e-05 0.00% Amr::defBaseLevel() 1 1.634e-05 1.907e-05 2.226e-05 0.00% Castro::post_init() 1 1.433e-05 1.64e-05 1.858e-05 0.00% Amr::initSubcycle() 1 9.825e-06 1.245e-05 1.83e-05 0.00% Gravity::swapTimeLevels() 10 9.593e-06 1.164e-05 1.514e-05 0.00% Gravity::set_mass_offset() 10 9.464e-06 1.128e-05 1.378e-05 0.00% Castro::computeNewDt() 9 6.977e-06 8.991e-06 1.186e-05 0.00% Castro::create_source_corrector() 10 8.23e-06 9.632e-06 1.116e-05 0.00% Castro::FluxRegCrseInit 10 6.731e-06 8.211e-06 1.081e-05 0.00% Castro::retry_advance_ctu() 10 6.425e-06 7.047e-06 7.739e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.583e-06 4.441e-06 6.43e-06 0.00% Castro::computeInitialDt() 2 3.198e-06 3.844e-06 4.479e-06 0.00% Amr::InitializeInit() 1 1.873e-06 2.312e-06 4.222e-06 0.00% Castro::post_regrid() 1 1.812e-06 2.991e-06 3.755e-06 0.00% Castro::FluxRegFineAdd() 10 2.407e-06 2.844e-06 3.429e-06 0.00% Amr::init() 1 1.643e-06 2.354e-06 3.144e-06 0.00% Amr::initialInit() 1 1.567e-06 1.887e-06 2.126e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.056e-06 1.375e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.541 3.542 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.32% Amr::timeStep() 10 3.328 3.329 3.329 93.99% Castro::advance() 10 3.312 3.313 3.313 93.53% Castro::subcycle_advance_ctu() 10 3.229 3.232 3.237 91.37% Castro::do_advance_ctu() 10 3.229 3.232 3.237 91.37% Castro::construct_ctu_hydro_source() 10 2.485 2.487 2.489 70.28% Gravity::make_radial_gravity() 21 0.308 0.325 0.3345 9.44% Castro::construct_old_gravity() 10 0.1889 0.2026 0.211 5.96% Gravity::get_old_grav_vector() 10 0.1879 0.2018 0.2103 5.94% AmrLevel::FillPatch() 41 0.185 0.1975 0.2083 5.88% Gravity::get_new_grav_vector() 11 0.2045 0.2059 0.2067 5.84% Amr::init() 1 0.1874 0.1877 0.1878 5.30% Castro::construct_new_gravity() 10 0.1822 0.1829 0.1837 5.19% Castro::initialize_do_advance() 10 0.1567 0.167 0.1776 5.01% FillPatchIterator::Initialize 41 0.1515 0.1651 0.1768 4.99% Amr::initialInit() 1 0.1741 0.1743 0.1746 4.93% Amr::InitializeInit() 1 0.06691 0.1069 0.1479 4.18% Amr::defBaseLevel() 1 0.06691 0.1069 0.1479 4.18% check_for_negative_density() 10 0.03354 0.09787 0.1436 4.05% FillPatchIterator::FillFromLevel0() 41 0.111 0.1228 0.1371 3.87% FillPatchSingleLevel 41 0.1109 0.1227 0.137 3.87% Castro::initData() 1 0.05132 0.08951 0.1308 3.69% Castro::clean_state() 62 0.1142 0.1159 0.1211 3.42% Castro::expand_state() 10 0.1052 0.1116 0.1161 3.28% Castro::estTimeStep() 21 0.03145 0.06916 0.112 3.16% Amr::FinalizeInit() 1 0.02653 0.06742 0.1077 3.04% FabArray::ParallelCopy() 41 0.07862 0.09068 0.1069 3.02% Castro::do_old_sources() 10 0.0916 0.09558 0.09964 2.81% amrex::Copy() 193 0.06908 0.07995 0.09307 2.63% Castro::computeInitialDt() 2 0.002478 0.04338 0.08351 2.36% FabArray::setVal() 143 0.06747 0.07277 0.08135 2.30% Castro::initialize_advance() 10 0.07278 0.07694 0.08084 2.28% FabArray::ParallelCopy_finish() 41 0.03806 0.0494 0.07111 2.01% Castro::computeTemp() 63 0.0653 0.06776 0.0706 1.99% Castro::do_new_sources() 10 0.05987 0.06325 0.06828 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04606 0.04797 0.05009 1.41% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04769 0.0498 1.41% Castro::normalize_species() 62 0.04133 0.04268 0.04486 1.27% FabArray::ParallelCopy_nowait() 41 0.03569 0.04119 0.04381 1.24% StateDataPhysBCFunct::() 41 0.03 0.03193 0.03477 0.98% StateData::FillBoundary(geom) 41 0.02981 0.0318 0.03463 0.98% Castro::construct_new_source() 50 0.02758 0.02977 0.03231 0.91% Gravity::interpolate_monopole_grav() 21 0.02787 0.02968 0.03114 0.88% Castro::construct_new_gravity_source() 10 0.0217 0.02337 0.02539 0.72% Castro::post_init() 1 0.02359 0.02391 0.0241 0.68% Castro::finalize_do_advance() 10 0.01185 0.01772 0.02169 0.61% Amr::writePlotFile() 2 0.02081 0.02096 0.02124 0.60% Castro::post_timestep() 10 0.01548 0.01584 0.01607 0.45% Castro::Castro() 1 0.009946 0.01115 0.01412 0.40% Castro::apply_source_to_state() 20 0.01211 0.01301 0.01366 0.39% FabArray::Saxpy() 20 0.01206 0.01296 0.01361 0.38% Castro::check_for_nan() 20 0.009491 0.01126 0.01341 0.38% MultiFab::contains_nan() 20 0.009469 0.01124 0.01339 0.38% FabArray::setDomainBndry() 41 0.006167 0.01018 0.01276 0.36% VisMF::Write(FabArray) 2 0.008911 0.009477 0.01197 0.34% Castro::construct_old_source() 50 0.006758 0.009545 0.0105 0.30% Castro::construct_old_gravity_source() 10 0.006675 0.009472 0.01042 0.29% Castro::initMFs() 1 0.006201 0.007332 0.01005 0.28% Castro::computeNewDt() 9 0.009163 0.00917 0.009178 0.26% AmrLevel::AmrLevel(dm) 1 0.005186 0.005978 0.007924 0.22% StateData::define() 4 0.00517 0.005958 0.007897 0.22% Castro::enforce_min_density() 62 0.005952 0.006149 0.006408 0.18% Castro::swap_state_time_levels() 10 0.003282 0.004368 0.004795 0.14% Castro::finalize_advance() 10 0.003135 0.003324 0.003514 0.10% Castro::buildMetrics() 1 0.001592 0.001848 0.002484 0.07% Castro::post_regrid() 1 0.001479 0.001581 0.001684 0.05% Amr::InitAmr() 1 0.0003576 0.0004656 0.0006825 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.283e-05 0.0002615 0.000385 0.01% DistributionMapping::LeastUsedCPUs() 1 7.395e-06 0.000256 0.0003777 0.01% FabArrayBase::getCPC() 41 7.181e-05 8.412e-05 0.0001012 0.00% Castro::enforce_consistent_e() 1 8.071e-05 8.757e-05 9.546e-05 0.00% Amr::writeSmallPlotFile() 1 2.987e-05 5.314e-05 7.613e-05 0.00% Castro::enforce_speed_limit() 62 2.522e-05 2.807e-05 3.121e-05 0.00% FabArrayBase::CPC::define() 2 2.148e-05 2.587e-05 2.88e-05 0.00% Amr::initSubcycle() 1 9.825e-06 1.245e-05 1.83e-05 0.00% Gravity::swapTimeLevels() 10 9.593e-06 1.164e-05 1.514e-05 0.00% Gravity::set_mass_offset() 10 9.464e-06 1.128e-05 1.378e-05 0.00% Castro::create_source_corrector() 10 8.23e-06 9.632e-06 1.116e-05 0.00% Castro::FluxRegCrseInit 10 6.731e-06 8.211e-06 1.081e-05 0.00% Castro::retry_advance_ctu() 10 6.425e-06 7.047e-06 7.739e-06 0.00% Castro::FluxRegFineAdd() 10 2.407e-06 2.844e-06 3.429e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.056e-06 1.375e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 39 B 70 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-6-g4fc7ef352fe1) finalized