Initializing AMReX (24.02-7-g798ca3356d16)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-7-g798ca3356d16) initialized Starting run at 06:34:36 UTC on 2024-02-09. Successfully read inputs file ... Castro git describe: 24.02-5-gf4cd7a9a0 AMReX git describe: 24.02-7-g798ca3356 Microphysics git describe: 24.02-11-g348ca2f5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013325576 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360815206 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34458576 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329560156 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32705743 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328396433 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.357066768 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318963286 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312306293 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31295156 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309525402 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007503341 seconds Ending run at 06:34:40 UTC on 2024-02-09. Run time = 3.503601454 Run time without initialization = 3.31466869 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.503 ... 3.503 ... 3.504 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3098 2.3646 2.4179 69.01% Gravity::make_radial_gravity() 21 0.291 0.2984 0.3132 8.94% check_for_negative_density() 10 0.02176 0.07446 0.129 3.68% Castro::initData() 1 0.04726 0.09421 0.1207 3.45% Castro::estTimeStep() 21 0.0266 0.05394 0.1058 3.02% amrex::Copy() 193 0.06567 0.08142 0.09747 2.78% FabArray::ParallelCopy_finish() 41 0.03682 0.05661 0.09216 2.63% FabArray::setVal() 143 0.06254 0.07102 0.07867 2.25% Castro::reset_internal_energy(Fab) 1008 0.0463 0.04818 0.0502 1.43% Castro::normalize_species() 62 0.04145 0.04223 0.04358 1.24% FabArray::ParallelCopy_nowait() 41 0.03448 0.04053 0.04213 1.20% FillPatchIterator::Initialize 41 0.02704 0.0319 0.03485 0.99% StateData::FillBoundary(geom) 41 0.03002 0.03243 0.03455 0.99% Gravity::interpolate_monopole_grav() 21 0.02768 0.02952 0.03079 0.88% Castro::construct_new_gravity_source() 10 0.02141 0.02331 0.02496 0.71% Castro::computeTemp() 63 0.01934 0.01992 0.0208 0.59% Castro::initialize_do_advance() 10 0.01185 0.01702 0.0182 0.52% Castro::initialize_advance() 10 0.009064 0.01222 0.01586 0.45% FabArray::Saxpy() 20 0.01015 0.01258 0.01343 0.38% FabArray::setDomainBndry() 41 0.006695 0.0102 0.01291 0.37% VisMF::Write(FabArray) 2 0.009013 0.009596 0.01195 0.34% MultiFab::contains_nan() 20 0.00932 0.01066 0.01187 0.34% Castro::initMFs() 1 0.006354 0.007409 0.01042 0.30% Castro::construct_old_gravity_source() 10 0.006335 0.009217 0.0102 0.29% Amr::writePlotFile() 2 0.006234 0.008415 0.009089 0.26% StateData::define() 4 0.00524 0.006049 0.00804 0.23% Castro::construct_new_source() 50 0.005853 0.006396 0.006724 0.19% Castro::enforce_min_density() 62 0.005654 0.006042 0.006347 0.18% main() 1 0.0047 0.004894 0.005083 0.15% Castro::swap_state_time_levels() 10 0.003128 0.004158 0.004397 0.13% Amr::coarseTimeStep() 10 0.001596 0.003442 0.004178 0.12% Gravity::get_new_grav_vector() 11 0.002991 0.003548 0.004165 0.12% Gravity::get_old_grav_vector() 10 0.001615 0.001994 0.002338 0.07% Castro::buildMetrics() 1 0.001502 0.001716 0.002302 0.07% Castro::finalize_do_advance() 10 0.000479 0.001135 0.001483 0.04% AmrLevel::FillPatch() 41 0.0008194 0.000948 0.001144 0.03% Amr::InitAmr() 1 0.0003567 0.0005058 0.0008124 0.02% DistributionMapping::LeastUsedCPUs() 1 8.056e-06 0.0003755 0.0005385 0.02% Amr::timeStep() 10 0.0001619 0.0002165 0.0003712 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002666 0.0002979 0.0003318 0.01% Castro::clean_state() 62 0.0001379 0.0001518 0.0001825 0.01% Castro::do_advance_ctu() 10 0.0001142 0.000141 0.000173 0.00% Castro::enforce_consistent_e() 1 8.111e-05 0.0001064 0.0001585 0.00% Castro::finalize_advance() 10 7.486e-05 8.946e-05 0.0001165 0.00% StateDataPhysBCFunct::() 41 8.182e-05 0.0001017 0.0001161 0.00% FillPatchIterator::FillFromLevel0() 41 9.34e-05 0.0001058 0.0001148 0.00% Amr::writeSmallPlotFile() 1 3.729e-05 5.467e-05 0.0001053 0.00% Castro::do_old_sources() 10 7.224e-05 8.884e-05 0.000101 0.00% FabArray::ParallelCopy() 41 7e-05 8.331e-05 9.373e-05 0.00% Castro::Castro() 1 5.867e-05 7.06e-05 9.153e-05 0.00% Castro::do_new_sources() 10 5.412e-05 6.589e-05 8.803e-05 0.00% FillPatchSingleLevel 41 6.611e-05 7.488e-05 8.535e-05 0.00% Castro::construct_old_source() 50 5.062e-05 7.082e-05 8.24e-05 0.00% Amr::FinalizeInit() 1 3.961e-06 1.355e-05 7.27e-05 0.00% FabArrayBase::getCPC() 41 4.221e-05 5.244e-05 6.741e-05 0.00% Castro::subcycle_advance_ctu() 10 3.568e-05 4.697e-05 5.706e-05 0.00% Castro::advance() 10 3.73e-05 4.587e-05 5.488e-05 0.00% Castro::apply_source_to_state() 20 3.435e-05 4.128e-05 4.861e-05 0.00% Castro::construct_new_gravity() 10 3.073e-05 3.707e-05 4.51e-05 0.00% Castro::construct_old_gravity() 10 3.243e-05 3.75e-05 4.378e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.666e-05 4.265e-05 0.00% Amr::defBaseLevel() 1 1.758e-05 2.192e-05 3.298e-05 0.00% Castro::enforce_speed_limit() 62 2.561e-05 2.87e-05 3.242e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.64e-05 2.071e-05 2.978e-05 0.00% FabArrayBase::CPC::define() 2 2.166e-05 2.542e-05 2.882e-05 0.00% Castro::post_init() 1 1.403e-05 1.765e-05 2.817e-05 0.00% Castro::computeNewDt() 9 7.882e-06 1.358e-05 2.71e-05 0.00% Castro::expand_state() 10 2.107e-05 2.418e-05 2.704e-05 0.00% Castro::check_for_nan() 20 2.086e-05 2.269e-05 2.456e-05 0.00% Castro::post_timestep() 10 1.094e-05 1.593e-05 2.4e-05 0.00% Gravity::set_mass_offset() 10 8.922e-06 1.069e-05 1.451e-05 0.00% Gravity::swapTimeLevels() 10 6.606e-06 9.145e-06 1.229e-05 0.00% Castro::create_source_corrector() 10 6.917e-06 8.229e-06 9.987e-06 0.00% Castro::retry_advance_ctu() 10 6.212e-06 7e-06 8.189e-06 0.00% Castro::FluxRegCrseInit 10 6.061e-06 6.693e-06 7.346e-06 0.00% Castro::post_regrid() 1 2.198e-06 3.81e-06 6.323e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.597e-06 4.779e-06 6.312e-06 0.00% Amr::InitializeInit() 1 2.091e-06 2.7e-06 4.492e-06 0.00% Castro::computeInitialDt() 2 3.486e-06 3.908e-06 4.332e-06 0.00% Castro::FluxRegFineAdd() 10 2.065e-06 2.432e-06 2.981e-06 0.00% Amr::init() 1 1.928e-06 2.295e-06 2.673e-06 0.00% Amr::initialInit() 1 1.66e-06 1.932e-06 2.166e-06 0.00% DistributionMapping::Distribute() 1 8.8e-07 1.249e-06 1.973e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.503 3.503 3.504 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 94.25% Amr::timeStep() 10 3.287 3.288 3.29 93.89% Castro::advance() 10 3.271 3.272 3.272 93.38% Castro::subcycle_advance_ctu() 10 3.189 3.194 3.202 91.39% Castro::do_advance_ctu() 10 3.189 3.194 3.202 91.39% Castro::construct_ctu_hydro_source() 10 2.455 2.459 2.464 70.31% Gravity::make_radial_gravity() 21 0.3074 0.3149 0.3273 9.34% AmrLevel::FillPatch() 41 0.1779 0.2033 0.221 6.31% Gravity::get_new_grav_vector() 11 0.2087 0.2105 0.2131 6.08% Castro::construct_old_gravity() 10 0.1854 0.1917 0.2032 5.80% Gravity::get_old_grav_vector() 10 0.1848 0.1911 0.2026 5.78% FillPatchIterator::Initialize 41 0.1482 0.1721 0.1922 5.48% Amr::init() 1 0.1879 0.1882 0.1884 5.38% Castro::construct_new_gravity() 10 0.1807 0.1819 0.1836 5.24% Amr::initialInit() 1 0.1748 0.175 0.1752 5.00% Castro::initialize_do_advance() 10 0.1553 0.1624 0.1698 4.85% FillPatchIterator::FillFromLevel0() 41 0.1111 0.13 0.1584 4.52% FillPatchSingleLevel 41 0.111 0.1299 0.1583 4.52% Amr::InitializeInit() 1 0.06762 0.1166 0.1415 4.04% Amr::defBaseLevel() 1 0.06762 0.1166 0.1415 4.04% check_for_negative_density() 10 0.02176 0.07446 0.129 3.68% FabArray::ParallelCopy() 41 0.07817 0.0973 0.1268 3.62% Castro::initData() 1 0.05107 0.09866 0.1253 3.58% Castro::clean_state() 62 0.1129 0.1158 0.1189 3.39% Castro::expand_state() 10 0.09971 0.1086 0.1159 3.31% Castro::do_old_sources() 10 0.08967 0.09961 0.1075 3.07% Amr::FinalizeInit() 1 0.03344 0.05838 0.1074 3.07% Castro::estTimeStep() 21 0.0266 0.05394 0.1058 3.02% amrex::Copy() 193 0.06567 0.08142 0.09747 2.78% FabArray::ParallelCopy_finish() 41 0.03682 0.05661 0.09216 2.63% Castro::initialize_advance() 10 0.06562 0.07448 0.07878 2.25% FabArray::setVal() 143 0.06254 0.07102 0.07867 2.25% Castro::computeInitialDt() 2 0.003036 0.02815 0.07725 2.20% Castro::computeTemp() 63 0.06614 0.06839 0.07054 2.01% Castro::do_new_sources() 10 0.05902 0.06239 0.06745 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04659 0.04848 0.05051 1.44% Castro::reset_internal_energy(Fab) 1008 0.0463 0.04818 0.0502 1.43% Castro::normalize_species() 62 0.04145 0.04223 0.04358 1.24% FabArray::ParallelCopy_nowait() 41 0.03457 0.0406 0.04223 1.21% StateDataPhysBCFunct::() 41 0.0301 0.03254 0.03466 0.99% StateData::FillBoundary(geom) 41 0.03002 0.03243 0.03455 0.99% Castro::construct_new_source() 50 0.02726 0.02971 0.0315 0.90% Gravity::interpolate_monopole_grav() 21 0.02768 0.02952 0.03079 0.88% Castro::post_init() 1 0.02872 0.02966 0.03019 0.86% Castro::construct_new_gravity_source() 10 0.02141 0.02331 0.02496 0.71% Amr::writePlotFile() 2 0.02066 0.02085 0.02105 0.60% Castro::finalize_do_advance() 10 0.0124 0.01742 0.02067 0.59% Castro::post_timestep() 10 0.01537 0.01604 0.0178 0.51% Castro::Castro() 1 0.01025 0.01145 0.01456 0.42% Castro::apply_source_to_state() 20 0.01019 0.01263 0.01348 0.38% FabArray::Saxpy() 20 0.01015 0.01258 0.01343 0.38% FabArray::setDomainBndry() 41 0.006695 0.0102 0.01291 0.37% VisMF::Write(FabArray) 2 0.009013 0.009596 0.01195 0.34% Castro::check_for_nan() 20 0.009344 0.01068 0.01189 0.34% MultiFab::contains_nan() 20 0.00932 0.01066 0.01187 0.34% Castro::initMFs() 1 0.006354 0.007409 0.01042 0.30% Castro::construct_old_source() 50 0.006386 0.009288 0.01028 0.29% Castro::construct_old_gravity_source() 10 0.006335 0.009217 0.0102 0.29% Castro::computeNewDt() 9 0.009462 0.00952 0.009538 0.27% AmrLevel::AmrLevel(dm) 1 0.005257 0.00607 0.008066 0.23% StateData::define() 4 0.00524 0.006049 0.00804 0.23% Castro::enforce_min_density() 62 0.005654 0.006042 0.006347 0.18% Castro::swap_state_time_levels() 10 0.003128 0.004158 0.004397 0.13% Castro::finalize_advance() 10 0.00308 0.003291 0.003467 0.10% Castro::post_regrid() 1 0.001483 0.001894 0.002845 0.08% Castro::buildMetrics() 1 0.001615 0.001862 0.002527 0.07% Amr::InitAmr() 1 0.000367 0.0005225 0.0008551 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.624e-05 0.0003815 0.000546 0.02% DistributionMapping::LeastUsedCPUs() 1 8.056e-06 0.0003755 0.0005385 0.02% Castro::enforce_consistent_e() 1 8.111e-05 0.0001064 0.0001585 0.00% Amr::writeSmallPlotFile() 1 3.729e-05 5.467e-05 0.0001053 0.00% FabArrayBase::getCPC() 41 6.874e-05 7.786e-05 9.548e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.666e-05 4.265e-05 0.00% Castro::enforce_speed_limit() 62 2.561e-05 2.87e-05 3.242e-05 0.00% FabArrayBase::CPC::define() 2 2.166e-05 2.542e-05 2.882e-05 0.00% Gravity::set_mass_offset() 10 8.922e-06 1.069e-05 1.451e-05 0.00% Gravity::swapTimeLevels() 10 6.606e-06 9.145e-06 1.229e-05 0.00% Castro::create_source_corrector() 10 6.917e-06 8.229e-06 9.987e-06 0.00% Castro::retry_advance_ctu() 10 6.212e-06 7e-06 8.189e-06 0.00% Castro::FluxRegCrseInit 10 6.061e-06 6.693e-06 7.346e-06 0.00% Castro::FluxRegFineAdd() 10 2.065e-06 2.432e-06 2.981e-06 0.00% DistributionMapping::Distribute() 1 8.8e-07 1.249e-06 1.973e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-7-g798ca3356d16) finalized