Initializing AMReX (24.02-12-g68244ec91d11)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-12-g68244ec91d11) initialized Starting run at 06:34:42 UTC on 2024-02-13. Successfully read inputs file ... Castro git describe: 24.02-18-g62193e94e AMReX git describe: 24.02-12-g68244ec91 Microphysics git describe: 24.02-13-g5226a1f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013270827 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357029733 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.364192764 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334123928 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331822767 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354858015 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.357516313 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.322920765 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312658181 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312867461 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311087141 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007607879 seconds Ending run at 06:34:46 UTC on 2024-02-13. Run time = 3.58033994 Run time without initialization = 3.372577413 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.579 ... 3.58 ... 3.58 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3215 2.3648 2.4245 67.72% Gravity::make_radial_gravity() 21 0.3024 0.3116 0.3258 9.10% check_for_negative_density() 10 0.0372 0.1016 0.1452 4.06% Castro::initData() 1 0.04744 0.08833 0.1433 4.00% Castro::estTimeStep() 21 0.02598 0.09185 0.141 3.94% FabArray::ParallelCopy_finish() 41 0.03696 0.06045 0.09136 2.55% amrex::Copy() 193 0.06694 0.07711 0.08744 2.44% FabArray::setVal() 143 0.06263 0.0718 0.08553 2.39% Castro::reset_internal_energy(Fab) 1008 0.04467 0.04734 0.04989 1.39% Castro::normalize_species() 62 0.04185 0.04285 0.04504 1.26% FabArray::ParallelCopy_nowait() 41 0.0369 0.04138 0.04275 1.19% FillPatchIterator::Initialize 41 0.02719 0.0335 0.03769 1.05% StateData::FillBoundary(geom) 41 0.03013 0.03236 0.03612 1.01% Gravity::interpolate_monopole_grav() 21 0.02817 0.02989 0.03266 0.91% Castro::construct_new_gravity_source() 10 0.02205 0.02512 0.02932 0.82% Castro::initialize_do_advance() 10 0.01137 0.01797 0.02126 0.59% Castro::computeTemp() 63 0.01798 0.01931 0.02067 0.58% FabArray::Saxpy() 20 0.01027 0.01306 0.01462 0.41% Castro::initialize_advance() 10 0.00839 0.0113 0.01453 0.41% MultiFab::contains_nan() 20 0.009943 0.01115 0.01225 0.34% VisMF::Write(FabArray) 2 0.008269 0.009202 0.01206 0.34% FabArray::setDomainBndry() 41 0.006871 0.01023 0.01198 0.33% Amr::writePlotFile() 2 0.006231 0.009222 0.01054 0.29% Castro::construct_old_gravity_source() 10 0.006936 0.009626 0.01051 0.29% Castro::initMFs() 1 0.006199 0.007194 0.009546 0.27% StateData::define() 4 0.005179 0.005935 0.00777 0.22% Castro::construct_new_source() 50 0.005991 0.006204 0.006522 0.18% Castro::enforce_min_density() 62 0.005681 0.006054 0.006273 0.18% main() 1 0.003965 0.004535 0.00512 0.14% Castro::swap_state_time_levels() 10 0.003108 0.004159 0.004958 0.14% Gravity::get_new_grav_vector() 11 0.002896 0.003509 0.004137 0.12% Amr::coarseTimeStep() 10 0.001558 0.002553 0.00363 0.10% Gravity::get_old_grav_vector() 10 0.001523 0.001995 0.002276 0.06% Castro::buildMetrics() 1 0.001465 0.001688 0.002245 0.06% Castro::finalize_do_advance() 10 0.0004981 0.001064 0.001373 0.04% AmrLevel::FillPatch() 41 0.0007415 0.0008733 0.001057 0.03% Amr::InitAmr() 1 0.0003394 0.0004705 0.0006458 0.02% Amr::timeStep() 10 0.0001613 0.0002252 0.0004734 0.01% DistributionMapping::LeastUsedCPUs() 1 6.074e-06 0.0002121 0.0003543 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002696 0.0002849 0.0002957 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001009 0.00013 0.0001837 0.01% Castro::clean_state() 62 0.0001366 0.0001488 0.000171 0.00% Castro::do_advance_ctu() 10 0.0001281 0.0001464 0.0001689 0.00% StateDataPhysBCFunct::() 41 9.115e-05 0.0001097 0.0001331 0.00% Castro::finalize_advance() 10 7.56e-05 0.0001002 0.0001205 0.00% Castro::do_old_sources() 10 7.202e-05 9.285e-05 0.0001088 0.00% Castro::enforce_consistent_e() 1 7.554e-05 8.99e-05 0.0001035 0.00% FabArray::ParallelCopy() 41 6.862e-05 7.981e-05 9.519e-05 0.00% FillPatchSingleLevel 41 6.036e-05 7.494e-05 9.006e-05 0.00% Castro::construct_old_source() 50 4.778e-05 6.925e-05 8.706e-05 0.00% FabArrayBase::getCPC() 41 5.571e-05 6.672e-05 8.341e-05 0.00% Castro::Castro() 1 4.92e-05 6.267e-05 8.063e-05 0.00% Castro::do_new_sources() 10 5.314e-05 6.308e-05 7.199e-05 0.00% Amr::FinalizeInit() 1 3.914e-06 1.217e-05 6.802e-05 0.00% Amr::writeSmallPlotFile() 1 3.242e-05 5.062e-05 6.631e-05 0.00% Castro::advance() 10 3.767e-05 4.598e-05 5.923e-05 0.00% Castro::subcycle_advance_ctu() 10 3.999e-05 4.704e-05 5.825e-05 0.00% Castro::apply_source_to_state() 20 3.948e-05 4.781e-05 5.596e-05 0.00% Castro::construct_new_gravity() 10 2.991e-05 3.987e-05 5.574e-05 0.00% Castro::construct_old_gravity() 10 3.2e-05 3.673e-05 4.477e-05 0.00% Castro::expand_state() 10 1.785e-05 2.686e-05 3.801e-05 0.00% Castro::enforce_speed_limit() 62 2.694e-05 3.157e-05 3.598e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.029e-05 2.521e-05 3.158e-05 0.00% Castro::post_timestep() 10 1.31e-05 1.747e-05 3.006e-05 0.00% Amr::initSubcycle() 1 9.502e-06 1.554e-05 2.967e-05 0.00% Amr::defBaseLevel() 1 1.597e-05 2.173e-05 2.93e-05 0.00% FabArrayBase::CPC::define() 2 1.952e-05 2.389e-05 2.892e-05 0.00% Castro::check_for_nan() 20 2.264e-05 2.445e-05 2.685e-05 0.00% Gravity::set_mass_offset() 10 9.176e-06 1.451e-05 2.12e-05 0.00% Castro::post_init() 1 1.306e-05 1.64e-05 2.015e-05 0.00% Gravity::swapTimeLevels() 10 7.016e-06 9.464e-06 1.202e-05 0.00% Castro::computeNewDt() 9 8.485e-06 9.434e-06 1.189e-05 0.00% Castro::create_source_corrector() 10 7.498e-06 8.926e-06 1.141e-05 0.00% Castro::retry_advance_ctu() 10 6.716e-06 7.506e-06 8.967e-06 0.00% Castro::FluxRegCrseInit 10 6.898e-06 7.706e-06 8.521e-06 0.00% Amr::InitializeInit() 1 1.978e-06 3.133e-06 6.555e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.85e-06 5.044e-06 6.183e-06 0.00% Castro::computeInitialDt() 2 2.679e-06 3.482e-06 4.074e-06 0.00% Castro::post_regrid() 1 1.843e-06 2.929e-06 3.897e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.249e-06 3.007e-06 0.00% Amr::init() 1 1.754e-06 2.201e-06 2.636e-06 0.00% Amr::initialInit() 1 1.326e-06 1.808e-06 2.317e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.186e-06 1.527e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.579 3.58 3.58 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 93.84% Amr::timeStep() 10 3.346 3.347 3.348 93.50% Castro::advance() 10 3.33 3.331 3.332 93.06% Castro::subcycle_advance_ctu() 10 3.243 3.252 3.26 91.06% Castro::do_advance_ctu() 10 3.243 3.252 3.26 91.06% Castro::construct_ctu_hydro_source() 10 2.483 2.487 2.492 69.59% Gravity::make_radial_gravity() 21 0.318 0.3279 0.3399 9.49% AmrLevel::FillPatch() 41 0.1875 0.2089 0.2246 6.27% Gravity::get_new_grav_vector() 11 0.2193 0.2209 0.2217 6.19% Amr::init() 1 0.2069 0.2071 0.2073 5.79% Castro::construct_old_gravity() 10 0.1889 0.1957 0.206 5.75% Gravity::get_old_grav_vector() 10 0.1879 0.195 0.2054 5.74% Castro::construct_new_gravity() 10 0.1942 0.1954 0.1962 5.48% Amr::initialInit() 1 0.1933 0.1937 0.1941 5.42% FillPatchIterator::Initialize 41 0.1593 0.1784 0.1939 5.42% Castro::initialize_do_advance() 10 0.1605 0.1717 0.1799 5.02% Amr::InitializeInit() 1 0.06673 0.1093 0.1645 4.59% Amr::defBaseLevel() 1 0.06673 0.1093 0.1645 4.59% FillPatchIterator::FillFromLevel0() 41 0.1154 0.1347 0.1598 4.46% FillPatchSingleLevel 41 0.1153 0.1345 0.1597 4.46% Castro::initData() 1 0.05121 0.09219 0.1474 4.12% check_for_negative_density() 10 0.0372 0.1016 0.1452 4.06% Castro::estTimeStep() 21 0.02598 0.09185 0.141 3.94% FabArray::ParallelCopy() 41 0.07895 0.102 0.1284 3.59% Amr::FinalizeInit() 1 0.02954 0.0844 0.1271 3.55% Castro::expand_state() 10 0.1021 0.1167 0.1262 3.52% Castro::clean_state() 62 0.1104 0.1151 0.1197 3.34% Castro::computeInitialDt() 2 0.002497 0.05762 0.1003 2.80% Castro::do_old_sources() 10 0.08875 0.09454 0.09786 2.73% FabArray::ParallelCopy_finish() 41 0.03696 0.06045 0.09136 2.55% amrex::Copy() 193 0.06694 0.07711 0.08744 2.44% FabArray::setVal() 143 0.06263 0.0718 0.08553 2.39% Castro::initialize_advance() 10 0.06671 0.0748 0.08452 2.36% Castro::do_new_sources() 10 0.05777 0.06591 0.07707 2.15% Castro::computeTemp() 63 0.06314 0.06693 0.07085 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04496 0.04762 0.05018 1.40% Castro::reset_internal_energy(Fab) 1008 0.04467 0.04734 0.04989 1.39% Castro::normalize_species() 62 0.04185 0.04285 0.04504 1.26% FabArray::ParallelCopy_nowait() 41 0.037 0.04147 0.04283 1.20% StateDataPhysBCFunct::() 41 0.03026 0.03247 0.03624 1.01% StateData::FillBoundary(geom) 41 0.03013 0.03236 0.03612 1.01% Castro::construct_new_source() 50 0.0282 0.03133 0.03553 0.99% Castro::finalize_do_advance() 10 0.01376 0.02593 0.03509 0.98% Gravity::interpolate_monopole_grav() 21 0.02817 0.02989 0.03266 0.91% Castro::construct_new_gravity_source() 10 0.02205 0.02512 0.02932 0.82% Castro::post_init() 1 0.02622 0.02639 0.02663 0.74% Amr::writePlotFile() 2 0.02089 0.02117 0.02137 0.60% Castro::post_timestep() 10 0.0153 0.01563 0.01626 0.45% Castro::apply_source_to_state() 20 0.01031 0.01311 0.01467 0.41% FabArray::Saxpy() 20 0.01027 0.01306 0.01462 0.41% Castro::Castro() 1 0.009907 0.01088 0.01319 0.37% Castro::check_for_nan() 20 0.009966 0.01118 0.01227 0.34% MultiFab::contains_nan() 20 0.009943 0.01115 0.01225 0.34% VisMF::Write(FabArray) 2 0.008269 0.009202 0.01206 0.34% FabArray::setDomainBndry() 41 0.006871 0.01023 0.01198 0.33% Castro::construct_old_source() 50 0.006984 0.009695 0.01059 0.30% Castro::construct_old_gravity_source() 10 0.006936 0.009626 0.01051 0.29% Castro::initMFs() 1 0.006199 0.007194 0.009546 0.27% Castro::computeNewDt() 9 0.009365 0.009372 0.009384 0.26% AmrLevel::AmrLevel(dm) 1 0.005199 0.00596 0.007794 0.22% StateData::define() 4 0.005179 0.005935 0.00777 0.22% Castro::enforce_min_density() 62 0.005681 0.006054 0.006273 0.18% Castro::swap_state_time_levels() 10 0.003108 0.004159 0.004958 0.14% Castro::finalize_advance() 10 0.002949 0.003738 0.004582 0.13% Castro::buildMetrics() 1 0.001583 0.001831 0.002446 0.07% Castro::post_regrid() 1 0.001536 0.001648 0.00192 0.05% Amr::InitAmr() 1 0.0003489 0.000486 0.0006732 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.201e-05 0.0002183 0.0003615 0.01% DistributionMapping::LeastUsedCPUs() 1 6.074e-06 0.0002121 0.0003543 0.01% FabArrayBase::getCPC() 41 7.781e-05 9.061e-05 0.0001066 0.00% Castro::enforce_consistent_e() 1 7.554e-05 8.99e-05 0.0001035 0.00% Amr::writeSmallPlotFile() 1 3.242e-05 5.062e-05 6.631e-05 0.00% Castro::enforce_speed_limit() 62 2.694e-05 3.157e-05 3.598e-05 0.00% Amr::initSubcycle() 1 9.502e-06 1.554e-05 2.967e-05 0.00% FabArrayBase::CPC::define() 2 1.952e-05 2.389e-05 2.892e-05 0.00% Gravity::set_mass_offset() 10 9.176e-06 1.451e-05 2.12e-05 0.00% Gravity::swapTimeLevels() 10 7.016e-06 9.464e-06 1.202e-05 0.00% Castro::create_source_corrector() 10 7.498e-06 8.926e-06 1.141e-05 0.00% Castro::retry_advance_ctu() 10 6.716e-06 7.506e-06 8.967e-06 0.00% Castro::FluxRegCrseInit 10 6.898e-06 7.706e-06 8.521e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.249e-06 3.007e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.186e-06 1.527e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-12-g68244ec91d11) finalized