Initializing AMReX (24.02-15-g392d06817072)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-15-g392d06817072) initialized Starting run at 06:42:14 UTC on 2024-02-14. Successfully read inputs file ... Castro git describe: 24.02-19-g1bdc65076 AMReX git describe: 24.02-15-g392d06817 Microphysics git describe: 24.02-16-g53d26219 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012609997 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35507576 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342248816 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330109547 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331270838 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331271726 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.369414885 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314234242 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308503365 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307504929 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308533407 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007529503 seconds Ending run at 06:42:17 UTC on 2024-02-14. Run time = 3.52480626 Run time without initialization = 3.311522869 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.524 ... 3.525 ... 3.525 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2921 2.3654 2.3994 68.07% Gravity::make_radial_gravity() 21 0.2846 0.3056 0.3291 9.34% Castro::initData() 1 0.07358 0.1013 0.146 4.14% check_for_negative_density() 10 0.02456 0.06274 0.139 3.94% Castro::estTimeStep() 21 0.02254 0.07487 0.1095 3.11% amrex::Copy() 193 0.06338 0.08222 0.09786 2.78% FabArray::ParallelCopy_finish() 41 0.04047 0.05348 0.09582 2.72% FabArray::setVal() 143 0.0547 0.06824 0.07577 2.15% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04746 0.04881 1.38% FabArray::ParallelCopy_nowait() 41 0.03752 0.04236 0.04378 1.24% Castro::normalize_species() 62 0.04157 0.04232 0.04309 1.22% StateData::FillBoundary(geom) 41 0.02996 0.03166 0.0356 1.01% FillPatchIterator::Initialize 41 0.0268 0.03279 0.03502 0.99% Gravity::interpolate_monopole_grav() 21 0.0271 0.02905 0.03016 0.86% Castro::construct_new_gravity_source() 10 0.02171 0.02358 0.02601 0.74% Castro::computeTemp() 63 0.01783 0.01947 0.02039 0.58% Castro::initialize_do_advance() 10 0.01169 0.01702 0.02008 0.57% Castro::initialize_advance() 10 0.003841 0.01071 0.01441 0.41% FabArray::Saxpy() 20 0.01056 0.01281 0.0142 0.40% MultiFab::contains_nan() 20 0.009959 0.01138 0.01386 0.39% FabArray::setDomainBndry() 41 0.006581 0.01075 0.01271 0.36% VisMF::Write(FabArray) 2 0.008759 0.009291 0.01154 0.33% Castro::construct_old_gravity_source() 10 0.006438 0.009444 0.01033 0.29% Castro::initMFs() 1 0.006157 0.007915 0.009432 0.27% Amr::writePlotFile() 2 0.00613 0.00846 0.008977 0.25% StateData::define() 4 0.005168 0.00657 0.007795 0.22% Castro::enforce_min_density() 62 0.00698 0.007413 0.007709 0.22% Castro::construct_new_source() 50 0.005803 0.00649 0.006971 0.20% main() 1 0.003768 0.004792 0.005088 0.14% Castro::swap_state_time_levels() 10 0.003144 0.004145 0.004372 0.12% Gravity::get_new_grav_vector() 11 0.002983 0.003661 0.004128 0.12% Amr::coarseTimeStep() 10 0.001257 0.002045 0.002586 0.07% Gravity::get_old_grav_vector() 10 0.001437 0.0021 0.00243 0.07% Castro::buildMetrics() 1 0.001463 0.001872 0.002223 0.06% Castro::finalize_do_advance() 10 0.0004823 0.001021 0.001305 0.04% AmrLevel::FillPatch() 41 0.0007326 0.0009328 0.001102 0.03% Amr::InitAmr() 1 0.0003628 0.0005466 0.0008423 0.02% DistributionMapping::LeastUsedCPUs() 1 8.939e-06 0.0003192 0.0005204 0.01% Amr::timeStep() 10 0.0001539 0.000213 0.0004163 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002822 0.0002949 0.0003202 0.01% StateDataPhysBCFunct::() 41 9.193e-05 0.0001281 0.0001963 0.01% Castro::clean_state() 62 0.0001452 0.00016 0.0001846 0.01% FillPatchIterator::FillFromLevel0() 41 9.434e-05 0.0001262 0.0001803 0.01% Castro::do_advance_ctu() 10 0.0001108 0.0001429 0.0001747 0.00% Castro::enforce_consistent_e() 1 7.948e-05 0.0001024 0.0001365 0.00% Castro::finalize_advance() 10 7.921e-05 9.748e-05 0.0001151 0.00% Castro::do_old_sources() 10 7.652e-05 9.484e-05 0.0001077 0.00% FabArray::ParallelCopy() 41 7.404e-05 8.265e-05 9.979e-05 0.00% Castro::Castro() 1 5.457e-05 7.221e-05 9.866e-05 0.00% Castro::do_new_sources() 10 5.345e-05 7.192e-05 9.768e-05 0.00% FillPatchSingleLevel 41 6.957e-05 7.686e-05 8.601e-05 0.00% Castro::construct_old_source() 50 6.026e-05 7.746e-05 8.494e-05 0.00% Amr::FinalizeInit() 1 3.36e-06 1.278e-05 7.356e-05 0.00% Amr::writeSmallPlotFile() 1 3.442e-05 4.987e-05 7.066e-05 0.00% FabArrayBase::getCPC() 41 4.602e-05 5.362e-05 6.296e-05 0.00% Castro::construct_old_gravity() 10 3.4e-05 4.487e-05 5.704e-05 0.00% Castro::subcycle_advance_ctu() 10 3.576e-05 4.613e-05 5.496e-05 0.00% Castro::apply_source_to_state() 20 3.825e-05 4.524e-05 5.229e-05 0.00% Castro::advance() 10 3.776e-05 4.556e-05 4.955e-05 0.00% Castro::construct_new_gravity() 10 2.892e-05 3.503e-05 4.322e-05 0.00% FabArrayBase::CPC::define() 2 1.959e-05 2.764e-05 3.945e-05 0.00% Castro::enforce_speed_limit() 62 2.728e-05 3e-05 3.75e-05 0.00% Castro::expand_state() 10 2.516e-05 2.893e-05 3.673e-05 0.00% Castro::post_init() 1 1.402e-05 1.909e-05 3.34e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.43e-05 2.226e-05 3.062e-05 0.00% Castro::check_for_nan() 20 2.086e-05 2.389e-05 2.614e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.538e-05 2.557e-05 0.00% Amr::defBaseLevel() 1 1.739e-05 1.974e-05 2.298e-05 0.00% Castro::create_source_corrector() 10 7.82e-06 1.064e-05 1.699e-05 0.00% Castro::post_timestep() 10 1.247e-05 1.473e-05 1.683e-05 0.00% Gravity::set_mass_offset() 10 9.051e-06 1.159e-05 1.45e-05 0.00% Gravity::swapTimeLevels() 10 7.866e-06 9.72e-06 1.329e-05 0.00% Castro::computeNewDt() 9 7.133e-06 8.153e-06 9.153e-06 0.00% Amr::init() 1 1.878e-06 2.988e-06 8.703e-06 0.00% Castro::FluxRegCrseInit 10 6.235e-06 7.589e-06 8.596e-06 0.00% Castro::retry_advance_ctu() 10 6.579e-06 7.414e-06 8.057e-06 0.00% Amr::InitializeInit() 1 1.891e-06 3.239e-06 6.954e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.905e-06 4.605e-06 5.695e-06 0.00% Castro::computeInitialDt() 2 2.957e-06 3.491e-06 4.452e-06 0.00% Castro::post_regrid() 1 1.817e-06 2.696e-06 3.376e-06 0.00% Castro::FluxRegFineAdd() 10 2.137e-06 2.425e-06 2.932e-06 0.00% Amr::initialInit() 1 1.514e-06 1.965e-06 2.613e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.168e-06 1.437e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.524 3.525 3.525 100.00% Amr::coarseTimeStep() 10 3.299 3.299 3.299 93.59% Amr::timeStep() 10 3.286 3.287 3.287 93.26% Castro::advance() 10 3.27 3.27 3.271 92.79% Castro::subcycle_advance_ctu() 10 3.192 3.197 3.214 91.19% Castro::do_advance_ctu() 10 3.192 3.197 3.214 91.19% Castro::construct_ctu_hydro_source() 10 2.445 2.449 2.453 69.58% Gravity::make_radial_gravity() 21 0.3029 0.3224 0.3419 9.70% AmrLevel::FillPatch() 41 0.1896 0.2054 0.2204 6.25% Castro::construct_old_gravity() 10 0.1803 0.1986 0.2161 6.13% Gravity::get_old_grav_vector() 10 0.1792 0.1978 0.2156 6.12% Amr::init() 1 0.2123 0.2126 0.2128 6.04% Gravity::get_new_grav_vector() 11 0.207 0.2077 0.2092 5.93% Amr::initialInit() 1 0.1995 0.1998 0.2001 5.68% FillPatchIterator::Initialize 41 0.1548 0.1715 0.1972 5.59% Castro::initialize_do_advance() 10 0.163 0.1712 0.1867 5.30% Castro::construct_new_gravity() 10 0.1828 0.1833 0.1845 5.23% Amr::InitializeInit() 1 0.09228 0.1242 0.1717 4.87% Amr::defBaseLevel() 1 0.09228 0.1242 0.1717 4.87% FillPatchIterator::FillFromLevel0() 41 0.1155 0.128 0.1638 4.65% FillPatchSingleLevel 41 0.1153 0.1279 0.1637 4.64% Castro::initData() 1 0.07719 0.1055 0.1498 4.25% check_for_negative_density() 10 0.02456 0.06274 0.139 3.94% FabArray::ParallelCopy() 41 0.0844 0.09601 0.1335 3.79% Castro::expand_state() 10 0.1063 0.1168 0.1303 3.70% Castro::clean_state() 62 0.1123 0.1161 0.1189 3.37% Castro::estTimeStep() 21 0.02254 0.07487 0.1095 3.11% Amr::FinalizeInit() 1 0.02806 0.07566 0.1077 3.06% Castro::do_old_sources() 10 0.09132 0.09776 0.1017 2.89% amrex::Copy() 193 0.06338 0.08222 0.09786 2.78% FabArray::ParallelCopy_finish() 41 0.04047 0.05348 0.09582 2.72% Castro::computeInitialDt() 2 0.002277 0.04993 0.08202 2.33% FabArray::setVal() 143 0.0547 0.06824 0.07577 2.15% Castro::initialize_advance() 10 0.05217 0.07029 0.07493 2.13% Castro::computeTemp() 63 0.06344 0.06722 0.06912 1.96% Castro::do_new_sources() 10 0.06052 0.0636 0.06832 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04562 0.04776 0.04909 1.39% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04746 0.04881 1.38% FabArray::ParallelCopy_nowait() 41 0.03761 0.04244 0.04387 1.24% Castro::normalize_species() 62 0.04157 0.04232 0.04309 1.22% StateDataPhysBCFunct::() 41 0.0301 0.03179 0.03569 1.01% StateData::FillBoundary(geom) 41 0.02996 0.03166 0.0356 1.01% Castro::construct_new_source() 50 0.02751 0.03007 0.03298 0.94% Gravity::interpolate_monopole_grav() 21 0.0271 0.02905 0.03016 0.86% Castro::construct_new_gravity_source() 10 0.02171 0.02358 0.02601 0.74% Castro::post_init() 1 0.02515 0.02531 0.02545 0.72% Amr::writePlotFile() 2 0.02028 0.02039 0.02059 0.58% Castro::finalize_do_advance() 10 0.01197 0.01688 0.0198 0.56% Castro::post_timestep() 10 0.01545 0.01597 0.01688 0.48% Castro::apply_source_to_state() 20 0.01061 0.01285 0.01426 0.40% FabArray::Saxpy() 20 0.01056 0.01281 0.0142 0.40% Castro::Castro() 1 0.009365 0.01178 0.01397 0.40% Castro::check_for_nan() 20 0.009984 0.0114 0.01388 0.39% MultiFab::contains_nan() 20 0.009959 0.01138 0.01386 0.39% FabArray::setDomainBndry() 41 0.006581 0.01075 0.01271 0.36% VisMF::Write(FabArray) 2 0.008759 0.009291 0.01154 0.33% Castro::construct_old_source() 50 0.006498 0.009521 0.0104 0.30% Castro::construct_old_gravity_source() 10 0.006438 0.009444 0.01033 0.29% Castro::initMFs() 1 0.006157 0.007915 0.009432 0.27% Castro::computeNewDt() 9 0.009078 0.009089 0.009098 0.26% AmrLevel::AmrLevel(dm) 1 0.005186 0.006592 0.007823 0.22% StateData::define() 4 0.005168 0.00657 0.007795 0.22% Castro::enforce_min_density() 62 0.00698 0.007413 0.007709 0.22% Castro::swap_state_time_levels() 10 0.003144 0.004145 0.004372 0.12% Castro::finalize_advance() 10 0.003106 0.003317 0.003527 0.10% Castro::buildMetrics() 1 0.001586 0.002038 0.002428 0.07% Castro::post_regrid() 1 0.001535 0.00163 0.001803 0.05% Amr::InitAmr() 1 0.0003736 0.000562 0.0008604 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.414e-05 0.000325 0.0005272 0.01% DistributionMapping::LeastUsedCPUs() 1 8.939e-06 0.0003192 0.0005204 0.01% Castro::enforce_consistent_e() 1 7.948e-05 0.0001024 0.0001365 0.00% FabArrayBase::getCPC() 41 7.11e-05 8.126e-05 8.967e-05 0.00% Amr::writeSmallPlotFile() 1 3.442e-05 4.987e-05 7.066e-05 0.00% FabArrayBase::CPC::define() 2 1.959e-05 2.764e-05 3.945e-05 0.00% Castro::enforce_speed_limit() 62 2.728e-05 3e-05 3.75e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.538e-05 2.557e-05 0.00% Castro::create_source_corrector() 10 7.82e-06 1.064e-05 1.699e-05 0.00% Gravity::set_mass_offset() 10 9.051e-06 1.159e-05 1.45e-05 0.00% Gravity::swapTimeLevels() 10 7.866e-06 9.72e-06 1.329e-05 0.00% Castro::FluxRegCrseInit 10 6.235e-06 7.589e-06 8.596e-06 0.00% Castro::retry_advance_ctu() 10 6.579e-06 7.414e-06 8.057e-06 0.00% Castro::FluxRegFineAdd() 10 2.137e-06 2.425e-06 2.932e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.168e-06 1.437e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-15-g392d06817072) finalized