Initializing AMReX (24.02-19-gf692e78ac94a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-19-gf692e78ac94a) initialized Starting run at 06:42:27 UTC on 2024-02-15. Successfully read inputs file ... Castro git describe: 24.02-20-g73aacc436 AMReX git describe: 24.02-19-gf692e78ac Microphysics git describe: 24.02-16-g53d26219 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01399724 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.37146373 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360103277 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328029787 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326861636 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329688239 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.371138155 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315947481 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313047551 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313922008 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310832814 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007488529 seconds Ending run at 06:42:31 UTC on 2024-02-15. Run time = 3.535884589 Run time without initialization = 3.354337968 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.536 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2935 2.3603 2.4194 68.42% Gravity::make_radial_gravity() 21 0.2918 0.3117 0.3268 9.24% check_for_negative_density() 10 0.03845 0.1013 0.1708 4.83% Castro::initData() 1 0.04724 0.08535 0.1194 3.38% Castro::estTimeStep() 21 0.02539 0.06247 0.1034 2.93% amrex::Copy() 193 0.06706 0.07986 0.09417 2.66% FabArray::setVal() 143 0.06685 0.074 0.08166 2.31% FabArray::ParallelCopy_finish() 41 0.03861 0.05141 0.07726 2.18% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04858 0.05531 1.56% Castro::normalize_species() 62 0.04184 0.04239 0.04369 1.24% FabArray::ParallelCopy_nowait() 41 0.03364 0.04031 0.04237 1.20% StateData::FillBoundary(geom) 41 0.0304 0.03222 0.0359 1.02% FillPatchIterator::Initialize 41 0.02797 0.03199 0.03459 0.98% Gravity::interpolate_monopole_grav() 21 0.02716 0.02927 0.03052 0.86% Castro::construct_new_gravity_source() 10 0.02146 0.02373 0.02623 0.74% Castro::computeTemp() 63 0.01951 0.02077 0.02347 0.66% Castro::initialize_do_advance() 10 0.01209 0.01688 0.0185 0.52% Castro::initialize_advance() 10 0.01085 0.01332 0.01581 0.45% MultiFab::contains_nan() 20 0.01032 0.01185 0.01476 0.42% FabArray::Saxpy() 20 0.01046 0.0126 0.01425 0.40% VisMF::Write(FabArray) 2 0.008975 0.009475 0.01192 0.34% FabArray::setDomainBndry() 41 0.008293 0.009985 0.01185 0.34% Castro::construct_old_gravity_source() 10 0.006324 0.009133 0.01011 0.29% Amr::writePlotFile() 2 0.006956 0.00923 0.009889 0.28% Castro::initMFs() 1 0.006388 0.006803 0.008006 0.23% Castro::construct_new_source() 50 0.005828 0.006354 0.0067 0.19% Castro::enforce_min_density() 62 0.005739 0.00621 0.006501 0.18% StateData::define() 4 0.005327 0.005515 0.006026 0.17% main() 1 0.003662 0.004779 0.0051 0.14% Castro::swap_state_time_levels() 10 0.003205 0.004203 0.004461 0.13% Gravity::get_old_grav_vector() 10 0.001579 0.002204 0.004083 0.12% Gravity::get_new_grav_vector() 11 0.002762 0.003514 0.003928 0.11% Amr::coarseTimeStep() 10 0.001057 0.00162 0.002521 0.07% Castro::buildMetrics() 1 0.001509 0.001576 0.001707 0.05% Castro::finalize_do_advance() 10 0.0004995 0.00112 0.001491 0.04% AmrLevel::FillPatch() 41 0.0007046 0.000837 0.0009698 0.03% Amr::InitAmr() 1 0.0003477 0.0003844 0.0005719 0.02% Amr::timeStep() 10 0.0001332 0.0002191 0.0004464 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002976 0.0003155 0.01% DistributionMapping::LeastUsedCPUs() 1 7.24e-06 0.0001942 0.0002306 0.01% Castro::clean_state() 62 0.0001376 0.0001586 0.0001807 0.01% Castro::do_advance_ctu() 10 0.000103 0.0001414 0.0001721 0.00% FillPatchIterator::FillFromLevel0() 41 9.692e-05 0.0001069 0.0001307 0.00% StateDataPhysBCFunct::() 41 8.087e-05 0.0001006 0.0001235 0.00% Castro::finalize_advance() 10 7.444e-05 9.869e-05 0.0001201 0.00% Castro::do_old_sources() 10 6.932e-05 8.886e-05 0.0001132 0.00% Amr::FinalizeInit() 1 3.829e-06 1.664e-05 9.825e-05 0.00% Castro::enforce_consistent_e() 1 7.429e-05 8.658e-05 9.499e-05 0.00% Castro::construct_old_source() 50 4.997e-05 7.01e-05 9.456e-05 0.00% FabArray::ParallelCopy() 41 6.408e-05 7.772e-05 9.311e-05 0.00% Castro::Castro() 1 5.922e-05 7.575e-05 9.18e-05 0.00% Amr::writeSmallPlotFile() 1 3.011e-05 5.811e-05 8.454e-05 0.00% FillPatchSingleLevel 41 6.166e-05 7.077e-05 7.749e-05 0.00% Castro::do_new_sources() 10 5.41e-05 6.307e-05 6.889e-05 0.00% Castro::construct_old_gravity() 10 3.027e-05 4.001e-05 6.142e-05 0.00% Castro::subcycle_advance_ctu() 10 3.95e-05 5.016e-05 5.966e-05 0.00% Castro::apply_source_to_state() 20 3.315e-05 4.629e-05 5.749e-05 0.00% FabArrayBase::getCPC() 41 3.784e-05 4.901e-05 5.573e-05 0.00% Castro::advance() 10 3.928e-05 4.394e-05 5.057e-05 0.00% Castro::construct_new_gravity() 10 2.976e-05 3.513e-05 4.662e-05 0.00% Castro::enforce_speed_limit() 62 2.201e-05 2.878e-05 3.775e-05 0.00% Castro::check_for_nan() 20 2.141e-05 2.608e-05 3.617e-05 0.00% Castro::create_source_corrector() 10 7.648e-06 1.502e-05 3.167e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.57e-05 2.958e-05 0.00% Amr::defBaseLevel() 1 1.731e-05 2.267e-05 2.785e-05 0.00% Castro::expand_state() 10 1.888e-05 2.344e-05 2.73e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.375e-05 2.047e-05 2.481e-05 0.00% Castro::post_timestep() 10 1.301e-05 1.569e-05 2.234e-05 0.00% Castro::post_init() 1 1.507e-05 1.727e-05 1.915e-05 0.00% Gravity::swapTimeLevels() 10 9.054e-06 1.076e-05 1.34e-05 0.00% Gravity::set_mass_offset() 10 8.365e-06 1.051e-05 1.337e-05 0.00% Amr::initSubcycle() 1 9.341e-06 9.98e-06 1.102e-05 0.00% Castro::computeNewDt() 9 7.056e-06 8.818e-06 1.098e-05 0.00% Castro::FluxRegCrseInit 10 6.138e-06 8.039e-06 9.881e-06 0.00% Amr::initialInit() 1 1.752e-06 3.054e-06 9.449e-06 0.00% Castro::retry_advance_ctu() 10 6.565e-06 7.607e-06 8.612e-06 0.00% Amr::init() 1 1.548e-06 3.265e-06 6.776e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.958e-06 5.581e-06 6.751e-06 0.00% Amr::InitializeInit() 1 1.956e-06 2.919e-06 5.632e-06 0.00% Castro::post_regrid() 1 1.743e-06 3.462e-06 5.387e-06 0.00% Castro::computeInitialDt() 2 2.969e-06 4.101e-06 4.856e-06 0.00% Castro::FluxRegFineAdd() 10 1.906e-06 2.32e-06 2.793e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.258e-06 1.885e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.536 3.536 100.00% Amr::coarseTimeStep() 10 3.342 3.342 3.342 94.51% Amr::timeStep() 10 3.329 3.33 3.33 94.18% Castro::advance() 10 3.313 3.314 3.314 93.72% Castro::subcycle_advance_ctu() 10 3.229 3.232 3.236 91.51% Castro::do_advance_ctu() 10 3.229 3.232 3.236 91.51% Castro::construct_ctu_hydro_source() 10 2.478 2.482 2.485 70.28% Gravity::make_radial_gravity() 21 0.3075 0.3284 0.341 9.64% Castro::construct_old_gravity() 10 0.1875 0.204 0.2148 6.07% Gravity::get_old_grav_vector() 10 0.1864 0.2033 0.2142 6.06% AmrLevel::FillPatch() 41 0.1814 0.1973 0.2113 5.98% Gravity::get_new_grav_vector() 11 0.2076 0.2087 0.2104 5.95% Castro::construct_new_gravity() 10 0.1838 0.1852 0.1862 5.27% Amr::init() 1 0.1808 0.181 0.181 5.12% FillPatchIterator::Initialize 41 0.1504 0.1663 0.1793 5.07% Castro::initialize_do_advance() 10 0.1538 0.1646 0.1791 5.07% check_for_negative_density() 10 0.03845 0.1013 0.1708 4.83% Amr::initialInit() 1 0.1666 0.167 0.1678 4.75% FillPatchIterator::FillFromLevel0() 41 0.112 0.1244 0.1431 4.05% FillPatchSingleLevel 41 0.1119 0.1243 0.1429 4.04% Amr::InitializeInit() 1 0.06769 0.106 0.1399 3.96% Amr::defBaseLevel() 1 0.06769 0.106 0.1399 3.96% Castro::clean_state() 62 0.1146 0.1175 0.1247 3.53% Castro::initData() 1 0.05142 0.08936 0.1236 3.50% Castro::expand_state() 10 0.1037 0.1078 0.1118 3.16% FabArray::ParallelCopy() 41 0.07998 0.09187 0.1111 3.14% Castro::do_old_sources() 10 0.08956 0.09763 0.1037 2.93% Castro::estTimeStep() 21 0.02539 0.06247 0.1034 2.93% Amr::FinalizeInit() 1 0.027 0.06099 0.1002 2.83% amrex::Copy() 193 0.06706 0.07986 0.09417 2.66% FabArray::setVal() 143 0.06685 0.074 0.08166 2.31% Castro::initialize_advance() 10 0.0742 0.07804 0.0811 2.29% FabArray::ParallelCopy_finish() 41 0.03861 0.05141 0.07726 2.18% Castro::computeTemp() 63 0.06638 0.06965 0.07714 2.18% Castro::computeInitialDt() 2 0.002339 0.03618 0.07456 2.11% Castro::do_new_sources() 10 0.05981 0.06294 0.0686 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04635 0.04888 0.05562 1.57% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04858 0.05531 1.56% Castro::normalize_species() 62 0.04184 0.04239 0.04369 1.24% FabArray::ParallelCopy_nowait() 41 0.03372 0.04039 0.04245 1.20% StateDataPhysBCFunct::() 41 0.0305 0.03232 0.03599 1.02% StateData::FillBoundary(geom) 41 0.0304 0.03222 0.0359 1.02% Castro::construct_new_source() 50 0.02729 0.03008 0.03293 0.93% Gravity::interpolate_monopole_grav() 21 0.02716 0.02927 0.03052 0.86% Castro::construct_new_gravity_source() 10 0.02146 0.02373 0.02623 0.74% Castro::post_init() 1 0.02423 0.02451 0.02526 0.71% Castro::finalize_do_advance() 10 0.01212 0.01814 0.02229 0.63% Amr::writePlotFile() 2 0.02077 0.02156 0.0218 0.62% Castro::post_timestep() 10 0.01546 0.01584 0.01639 0.46% Castro::check_for_nan() 20 0.01034 0.01188 0.01478 0.42% MultiFab::contains_nan() 20 0.01032 0.01185 0.01476 0.42% Castro::apply_source_to_state() 20 0.01051 0.01264 0.0143 0.40% FabArray::Saxpy() 20 0.01046 0.0126 0.01425 0.40% VisMF::Write(FabArray) 2 0.008975 0.009475 0.01192 0.34% FabArray::setDomainBndry() 41 0.008293 0.009985 0.01185 0.34% Castro::Castro() 1 0.0105 0.0109 0.01171 0.33% Castro::construct_old_source() 50 0.006374 0.009204 0.0102 0.29% Castro::construct_old_gravity_source() 10 0.006324 0.009133 0.01011 0.29% Castro::computeNewDt() 9 0.009259 0.009276 0.009285 0.26% Castro::initMFs() 1 0.006388 0.006803 0.008006 0.23% Castro::enforce_min_density() 62 0.005739 0.00621 0.006501 0.18% AmrLevel::AmrLevel(dm) 1 0.005342 0.005536 0.00605 0.17% StateData::define() 4 0.005327 0.005515 0.006026 0.17% Castro::swap_state_time_levels() 10 0.003205 0.004203 0.004461 0.13% Castro::finalize_advance() 10 0.003069 0.003323 0.003557 0.10% Castro::buildMetrics() 1 0.001633 0.001711 0.001873 0.05% Castro::post_regrid() 1 0.001528 0.001589 0.001649 0.05% Amr::InitAmr() 1 0.0003573 0.0003943 0.0005829 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.279e-05 0.000201 0.0002381 0.01% DistributionMapping::LeastUsedCPUs() 1 7.24e-06 0.0001942 0.0002306 0.01% Castro::enforce_consistent_e() 1 7.429e-05 8.658e-05 9.499e-05 0.00% Amr::writeSmallPlotFile() 1 3.011e-05 5.811e-05 8.454e-05 0.00% FabArrayBase::getCPC() 41 6.397e-05 7.472e-05 8.037e-05 0.00% Castro::enforce_speed_limit() 62 2.201e-05 2.878e-05 3.775e-05 0.00% Castro::create_source_corrector() 10 7.648e-06 1.502e-05 3.167e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.57e-05 2.958e-05 0.00% Gravity::swapTimeLevels() 10 9.054e-06 1.076e-05 1.34e-05 0.00% Gravity::set_mass_offset() 10 8.365e-06 1.051e-05 1.337e-05 0.00% Amr::initSubcycle() 1 9.341e-06 9.98e-06 1.102e-05 0.00% Castro::FluxRegCrseInit 10 6.138e-06 8.039e-06 9.881e-06 0.00% Castro::retry_advance_ctu() 10 6.565e-06 7.607e-06 8.612e-06 0.00% Castro::FluxRegFineAdd() 10 1.906e-06 2.32e-06 2.793e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.258e-06 1.885e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-19-gf692e78ac94a) finalized