Initializing AMReX (24.02-20-g6117841029b8)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-20-g6117841029b8) initialized Starting run at 06:33:46 UTC on 2024-02-16. Successfully read inputs file ... Castro git describe: 24.02-20-g73aacc436 AMReX git describe: 24.02-20-g611784102 Microphysics git describe: 24.02-16-g53d26219 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013166896 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361185297 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336417534 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325103212 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.323569329 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.323359805 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354826063 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315145442 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308737556 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308459948 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309321158 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007417647 seconds Ending run at 06:33:49 UTC on 2024-02-16. Run time = 3.486813811 Run time without initialization = 3.278847975 Average number of zones advanced per microsecond: 0.800 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.486 ... 3.487 ... 3.487 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2817 2.3471 2.3883 68.49% Gravity::make_radial_gravity() 21 0.2899 0.2984 0.3137 9.00% Castro::initData() 1 0.0477 0.09054 0.1434 4.11% check_for_negative_density() 10 0.02161 0.06144 0.1294 3.71% Castro::estTimeStep() 21 0.03262 0.08348 0.1205 3.45% FabArray::ParallelCopy_finish() 41 0.03836 0.05924 0.1091 3.13% amrex::Copy() 193 0.06368 0.07768 0.08826 2.53% FabArray::setVal() 143 0.05416 0.06762 0.07401 2.12% Castro::reset_internal_energy(Fab) 1008 0.04621 0.0475 0.04904 1.41% Castro::normalize_species() 62 0.04152 0.04272 0.04641 1.33% FabArray::ParallelCopy_nowait() 41 0.03309 0.04068 0.0446 1.28% FillPatchIterator::Initialize 41 0.02597 0.03162 0.03759 1.08% StateData::FillBoundary(geom) 41 0.02847 0.03118 0.03407 0.98% Gravity::interpolate_monopole_grav() 21 0.02709 0.0289 0.02976 0.85% Castro::construct_new_gravity_source() 10 0.02102 0.02352 0.02644 0.76% Castro::computeTemp() 63 0.01861 0.01954 0.02034 0.58% Castro::initialize_do_advance() 10 0.0116 0.01659 0.01783 0.51% Castro::initialize_advance() 10 0.003797 0.01085 0.01438 0.41% FabArray::Saxpy() 20 0.009926 0.01251 0.01426 0.41% VisMF::Write(FabArray) 2 0.008623 0.009327 0.01203 0.34% FabArray::setDomainBndry() 41 0.006249 0.009267 0.01164 0.33% MultiFab::contains_nan() 20 0.00945 0.0106 0.01164 0.33% Castro::construct_old_gravity_source() 10 0.00636 0.009315 0.01017 0.29% Amr::writePlotFile() 2 0.006047 0.008942 0.009662 0.28% Castro::enforce_min_density() 62 0.007082 0.007405 0.007681 0.22% Castro::initMFs() 1 0.006217 0.006712 0.007505 0.22% Castro::construct_new_source() 50 0.005873 0.006384 0.006759 0.19% StateData::define() 4 0.005222 0.005558 0.005931 0.17% Castro::swap_state_time_levels() 10 0.003119 0.004168 0.004823 0.14% main() 1 0.003581 0.004188 0.004579 0.13% Gravity::get_new_grav_vector() 11 0.002901 0.003481 0.003919 0.11% Gravity::get_old_grav_vector() 10 0.001433 0.001925 0.002507 0.07% Amr::coarseTimeStep() 10 0.00133 0.001984 0.002385 0.07% Castro::buildMetrics() 1 0.001446 0.001543 0.001685 0.05% Castro::finalize_do_advance() 10 0.0004894 0.001057 0.001361 0.04% AmrLevel::FillPatch() 41 0.000752 0.0008084 0.0008627 0.02% Amr::InitAmr() 1 0.0003511 0.0003925 0.0005544 0.02% Amr::timeStep() 10 0.0001514 0.0002143 0.0003462 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002676 0.0002838 0.0003221 0.01% DistributionMapping::LeastUsedCPUs() 1 7.934e-06 0.0001783 0.0002201 0.01% Castro::do_advance_ctu() 10 0.0001084 0.0001394 0.0001797 0.01% Castro::clean_state() 62 0.0001356 0.0001485 0.0001637 0.00% FillPatchIterator::FillFromLevel0() 41 9.167e-05 0.0001083 0.0001579 0.00% StateDataPhysBCFunct::() 41 9.325e-05 0.0001093 0.0001399 0.00% Castro::finalize_advance() 10 7.007e-05 9.427e-05 0.000115 0.00% Castro::enforce_consistent_e() 1 7.783e-05 9.173e-05 0.0001138 0.00% Castro::do_old_sources() 10 6.982e-05 8.575e-05 9.814e-05 0.00% FabArray::ParallelCopy() 41 6.781e-05 7.5e-05 9.651e-05 0.00% Castro::apply_source_to_state() 20 3.367e-05 4.849e-05 9.407e-05 0.00% Castro::Castro() 1 6.007e-05 7.398e-05 9.217e-05 0.00% FillPatchSingleLevel 41 6.078e-05 7.053e-05 8.646e-05 0.00% Castro::construct_old_source() 50 4.55e-05 6.772e-05 8.498e-05 0.00% Amr::FinalizeInit() 1 4.255e-06 1.558e-05 8.494e-05 0.00% Castro::do_new_sources() 10 5.497e-05 6.512e-05 7.397e-05 0.00% FabArrayBase::getCPC() 41 4.298e-05 5.103e-05 7.06e-05 0.00% Castro::advance() 10 4.233e-05 4.947e-05 6.836e-05 0.00% Amr::writeSmallPlotFile() 1 3.075e-05 5.042e-05 6.764e-05 0.00% Castro::construct_new_gravity() 10 2.868e-05 4.228e-05 5.512e-05 0.00% Castro::subcycle_advance_ctu() 10 3.733e-05 4.549e-05 5.439e-05 0.00% Castro::construct_old_gravity() 10 3.21e-05 3.663e-05 4.114e-05 0.00% Castro::enforce_speed_limit() 62 2.674e-05 3.001e-05 3.658e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.747e-05 3.587e-05 0.00% Castro::expand_state() 10 2.006e-05 2.336e-05 3.158e-05 0.00% Castro::check_for_nan() 20 2.063e-05 2.338e-05 2.613e-05 0.00% Amr::defBaseLevel() 1 1.679e-05 1.946e-05 2.501e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.879e-05 2.008e-05 2.287e-05 0.00% Castro::post_init() 1 1.361e-05 1.56e-05 1.964e-05 0.00% Castro::post_timestep() 10 1.195e-05 1.407e-05 1.633e-05 0.00% Gravity::set_mass_offset() 10 8.32e-06 1.083e-05 1.321e-05 0.00% Amr::initSubcycle() 1 9.762e-06 1.087e-05 1.186e-05 0.00% Gravity::swapTimeLevels() 10 8.321e-06 9.475e-06 1.166e-05 0.00% Castro::FluxRegCrseInit 10 5.272e-06 7.477e-06 1.083e-05 0.00% Castro::create_source_corrector() 10 7.51e-06 9.135e-06 1.01e-05 0.00% Castro::computeNewDt() 9 7.142e-06 7.782e-06 8.853e-06 0.00% Castro::retry_advance_ctu() 10 6.397e-06 7.016e-06 7.956e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.627e-06 4.861e-06 6.904e-06 0.00% Castro::post_regrid() 1 2.467e-06 3.854e-06 6.719e-06 0.00% Amr::InitializeInit() 1 1.771e-06 2.912e-06 5.231e-06 0.00% Castro::computeInitialDt() 2 2.723e-06 3.745e-06 4.526e-06 0.00% Castro::FluxRegFineAdd() 10 1.871e-06 2.357e-06 3.195e-06 0.00% Amr::init() 1 1.675e-06 2.179e-06 3.037e-06 0.00% Amr::initialInit() 1 1.352e-06 1.7e-06 2.194e-06 0.00% DistributionMapping::Distribute() 1 8.49e-07 1.019e-06 1.326e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.486 3.487 3.487 100.00% Amr::coarseTimeStep() 10 3.267 3.267 3.267 93.69% Amr::timeStep() 10 3.254 3.254 3.255 93.35% Castro::advance() 10 3.238 3.238 3.239 92.88% Castro::subcycle_advance_ctu() 10 3.16 3.164 3.182 91.27% Castro::do_advance_ctu() 10 3.16 3.164 3.182 91.27% Castro::construct_ctu_hydro_source() 10 2.423 2.429 2.432 69.75% Gravity::make_radial_gravity() 21 0.3059 0.3141 0.3274 9.39% AmrLevel::FillPatch() 41 0.181 0.203 0.2269 6.51% Gravity::get_new_grav_vector() 11 0.205 0.207 0.2086 5.98% Amr::init() 1 0.2072 0.2074 0.2075 5.95% FillPatchIterator::Initialize 41 0.1496 0.1724 0.2036 5.84% Castro::construct_old_gravity() 10 0.1818 0.191 0.2005 5.75% Gravity::get_old_grav_vector() 10 0.1812 0.1904 0.2 5.74% Amr::initialInit() 1 0.1938 0.194 0.1942 5.57% Castro::construct_new_gravity() 10 0.1807 0.1821 0.1844 5.29% FillPatchIterator::FillFromLevel0() 41 0.1145 0.1315 0.1714 4.92% FillPatchSingleLevel 41 0.1144 0.1314 0.1713 4.91% Castro::initialize_do_advance() 10 0.1541 0.1614 0.1683 4.83% Amr::InitializeInit() 1 0.06732 0.1109 0.1651 4.74% Amr::defBaseLevel() 1 0.06732 0.1109 0.1651 4.74% Castro::initData() 1 0.05179 0.0946 0.1476 4.23% FabArray::ParallelCopy() 41 0.08311 0.1001 0.1424 4.08% check_for_negative_density() 10 0.02161 0.06144 0.1294 3.71% Amr::FinalizeInit() 1 0.02911 0.0831 0.1267 3.63% Castro::expand_state() 10 0.0994 0.1079 0.1218 3.49% Castro::estTimeStep() 21 0.03262 0.08348 0.1205 3.45% Castro::clean_state() 62 0.1144 0.1167 0.1197 3.43% Castro::do_old_sources() 10 0.08914 0.1024 0.1106 3.17% FabArray::ParallelCopy_finish() 41 0.03836 0.05924 0.1091 3.13% Castro::computeInitialDt() 2 0.002529 0.05674 0.1004 2.88% amrex::Copy() 193 0.06368 0.07768 0.08826 2.53% Castro::initialize_advance() 10 0.05188 0.07047 0.07457 2.14% FabArray::setVal() 143 0.05416 0.06762 0.07401 2.12% Castro::computeTemp() 63 0.06539 0.06732 0.06932 1.99% Castro::do_new_sources() 10 0.05903 0.06267 0.0677 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04653 0.04778 0.04931 1.41% Castro::reset_internal_energy(Fab) 1008 0.04621 0.0475 0.04904 1.41% Castro::normalize_species() 62 0.04152 0.04272 0.04641 1.33% FabArray::ParallelCopy_nowait() 41 0.03318 0.04075 0.04468 1.28% StateDataPhysBCFunct::() 41 0.02857 0.03128 0.03418 0.98% StateData::FillBoundary(geom) 41 0.02847 0.03118 0.03407 0.98% Castro::construct_new_source() 50 0.0269 0.02991 0.03289 0.94% Gravity::interpolate_monopole_grav() 21 0.02709 0.0289 0.02976 0.85% Castro::construct_new_gravity_source() 10 0.02102 0.02352 0.02644 0.76% Castro::post_init() 1 0.02577 0.02598 0.02613 0.75% Castro::finalize_do_advance() 10 0.01212 0.01855 0.02313 0.66% Amr::writePlotFile() 2 0.02068 0.02089 0.02114 0.61% Castro::post_timestep() 10 0.01542 0.01588 0.01642 0.47% Castro::apply_source_to_state() 20 0.00997 0.01256 0.01436 0.41% FabArray::Saxpy() 20 0.009926 0.01251 0.01426 0.41% VisMF::Write(FabArray) 2 0.008623 0.009327 0.01203 0.34% Castro::check_for_nan() 20 0.009476 0.01062 0.01166 0.33% FabArray::setDomainBndry() 41 0.006249 0.009267 0.01164 0.33% MultiFab::contains_nan() 20 0.00945 0.0106 0.01164 0.33% Castro::Castro() 1 0.009868 0.01055 0.01142 0.33% Castro::construct_old_source() 50 0.006405 0.009383 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.00636 0.009315 0.01017 0.29% Castro::computeNewDt() 9 0.009246 0.00926 0.00927 0.27% Castro::enforce_min_density() 62 0.007082 0.007405 0.007681 0.22% Castro::initMFs() 1 0.006217 0.006712 0.007505 0.22% AmrLevel::AmrLevel(dm) 1 0.005242 0.005578 0.005952 0.17% StateData::define() 4 0.005222 0.005558 0.005931 0.17% Castro::swap_state_time_levels() 10 0.003119 0.004168 0.004823 0.14% Castro::finalize_advance() 10 0.003186 0.003346 0.003543 0.10% Castro::post_regrid() 1 0.001501 0.001659 0.001946 0.06% Castro::buildMetrics() 1 0.001558 0.001681 0.001847 0.05% Amr::InitAmr() 1 0.0003619 0.0004034 0.0005663 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.302e-05 0.0001842 0.0002283 0.01% DistributionMapping::LeastUsedCPUs() 1 7.934e-06 0.0001783 0.0002201 0.01% Castro::enforce_consistent_e() 1 7.783e-05 9.173e-05 0.0001138 0.00% FabArrayBase::getCPC() 41 6.864e-05 7.85e-05 9.665e-05 0.00% Amr::writeSmallPlotFile() 1 3.075e-05 5.042e-05 6.764e-05 0.00% Castro::enforce_speed_limit() 62 2.674e-05 3.001e-05 3.658e-05 0.00% FabArrayBase::CPC::define() 2 2.23e-05 2.747e-05 3.587e-05 0.00% Gravity::set_mass_offset() 10 8.32e-06 1.083e-05 1.321e-05 0.00% Amr::initSubcycle() 1 9.762e-06 1.087e-05 1.186e-05 0.00% Gravity::swapTimeLevels() 10 8.321e-06 9.475e-06 1.166e-05 0.00% Castro::FluxRegCrseInit 10 5.272e-06 7.477e-06 1.083e-05 0.00% Castro::create_source_corrector() 10 7.51e-06 9.135e-06 1.01e-05 0.00% Castro::retry_advance_ctu() 10 6.397e-06 7.016e-06 7.956e-06 0.00% Castro::FluxRegFineAdd() 10 1.871e-06 2.357e-06 3.195e-06 0.00% DistributionMapping::Distribute() 1 8.49e-07 1.019e-06 1.326e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-20-g6117841029b8) finalized