Initializing AMReX (24.02-21-g99b47cb58a3c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-21-g99b47cb58a3c) initialized Starting run at 06:32:10 UTC on 2024-02-19. Successfully read inputs file ... Castro git describe: 24.02-20-g73aacc436 AMReX git describe: 24.02-21-g99b47cb58 Microphysics git describe: 24.02-17-geb1f853d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013217937 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360451039 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348549809 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.327040357 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329432071 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330290787 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353925796 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317232266 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.3103144 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310005492 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312103242 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007474665 seconds Ending run at 06:32:14 UTC on 2024-02-19. Run time = 3.501841823 Run time without initialization = 3.312220633 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.501 ... 3.502 ... 3.502 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2916 2.3553 2.4057 68.70% Gravity::make_radial_gravity() 21 0.2866 0.2943 0.3095 8.84% check_for_negative_density() 10 0.0315 0.08575 0.151 4.31% Castro::initData() 1 0.04883 0.08747 0.1259 3.60% Castro::estTimeStep() 21 0.02202 0.06719 0.1071 3.06% FabArray::ParallelCopy_finish() 41 0.03605 0.05811 0.09747 2.78% amrex::Copy() 193 0.06451 0.08003 0.09506 2.71% FabArray::setVal() 143 0.06315 0.07134 0.07732 2.21% Castro::reset_internal_energy(Fab) 1008 0.04603 0.04737 0.0498 1.42% Castro::normalize_species() 62 0.04155 0.04226 0.04401 1.26% FabArray::ParallelCopy_nowait() 41 0.03238 0.03975 0.04222 1.21% FillPatchIterator::Initialize 41 0.02609 0.03136 0.0347 0.99% StateData::FillBoundary(geom) 41 0.02834 0.03094 0.03402 0.97% Gravity::interpolate_monopole_grav() 21 0.02731 0.02918 0.03043 0.87% Castro::construct_new_gravity_source() 10 0.0206 0.02328 0.02589 0.74% Castro::computeTemp() 63 0.0182 0.0195 0.02056 0.59% Castro::initialize_do_advance() 10 0.01102 0.01673 0.01783 0.51% Castro::initialize_advance() 10 0.008972 0.01219 0.01556 0.44% FabArray::Saxpy() 20 0.01028 0.01248 0.01372 0.39% VisMF::Write(FabArray) 2 0.008397 0.009289 0.01212 0.35% FabArray::setDomainBndry() 41 0.007127 0.009483 0.01168 0.33% MultiFab::contains_nan() 20 0.009606 0.01073 0.01154 0.33% Amr::writePlotFile() 2 0.006 0.008815 0.01057 0.30% Castro::construct_old_gravity_source() 10 0.006486 0.009269 0.01007 0.29% Castro::initMFs() 1 0.006211 0.006677 0.008065 0.23% Castro::enforce_min_density() 62 0.007051 0.007374 0.007752 0.22% Castro::construct_new_source() 50 0.005697 0.006352 0.006878 0.20% StateData::define() 4 0.005277 0.005479 0.006136 0.18% Castro::swap_state_time_levels() 10 0.003114 0.004109 0.004876 0.14% main() 1 0.003738 0.004323 0.004719 0.13% Amr::coarseTimeStep() 10 0.0009879 0.003632 0.004709 0.13% Gravity::get_new_grav_vector() 11 0.002826 0.003426 0.003885 0.11% Gravity::get_old_grav_vector() 10 0.001611 0.001969 0.002234 0.06% Castro::buildMetrics() 1 0.001494 0.001568 0.001715 0.05% Castro::finalize_do_advance() 10 0.0005817 0.001041 0.001331 0.04% AmrLevel::FillPatch() 41 0.0007218 0.0008711 0.0009477 0.03% Amr::InitAmr() 1 0.0003555 0.0003875 0.0004941 0.01% Amr::timeStep() 10 0.0001529 0.0002036 0.0003264 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002694 0.0002858 0.0002981 0.01% Castro::do_advance_ctu() 10 0.000108 0.000138 0.0001772 0.01% Castro::clean_state() 62 0.0001297 0.0001463 0.0001564 0.00% DistributionMapping::LeastUsedCPUs() 1 7.396e-06 0.0001065 0.0001361 0.00% FillPatchIterator::FillFromLevel0() 41 8.707e-05 0.0001017 0.000125 0.00% Castro::finalize_advance() 10 7.127e-05 9.264e-05 0.000113 0.00% StateDataPhysBCFunct::() 41 8.209e-05 9.845e-05 0.000112 0.00% Castro::do_old_sources() 10 6.465e-05 8.446e-05 0.0001101 0.00% Castro::do_new_sources() 10 5.73e-05 6.714e-05 0.0001 0.00% Castro::enforce_consistent_e() 1 7.691e-05 8.415e-05 9.032e-05 0.00% Castro::construct_old_source() 50 4.222e-05 6.665e-05 8.003e-05 0.00% FabArray::ParallelCopy() 41 6.458e-05 7.071e-05 7.838e-05 0.00% Castro::Castro() 1 5.899e-05 6.812e-05 7.792e-05 0.00% Amr::writeSmallPlotFile() 1 2.985e-05 5.906e-05 7.617e-05 0.00% FillPatchSingleLevel 41 5.918e-05 6.641e-05 7.432e-05 0.00% Amr::FinalizeInit() 1 4.116e-06 1.325e-05 7.328e-05 0.00% Castro::subcycle_advance_ctu() 10 3.447e-05 4.472e-05 5.984e-05 0.00% FabArrayBase::getCPC() 41 4.066e-05 4.827e-05 5.854e-05 0.00% Castro::advance() 10 3.436e-05 4.466e-05 5.15e-05 0.00% Castro::apply_source_to_state() 20 3.376e-05 4.016e-05 4.908e-05 0.00% Castro::construct_new_gravity() 10 2.966e-05 3.447e-05 4.096e-05 0.00% Castro::construct_old_gravity() 10 3.17e-05 3.651e-05 4.062e-05 0.00% Amr::defBaseLevel() 1 1.615e-05 2.802e-05 3.905e-05 0.00% FabArrayBase::CPC::define() 2 2.116e-05 2.455e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.491e-05 2.725e-05 3.014e-05 0.00% Castro::check_for_nan() 20 1.957e-05 2.209e-05 2.553e-05 0.00% Castro::expand_state() 10 1.795e-05 2.137e-05 2.454e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.33e-05 1.99e-05 2.391e-05 0.00% Castro::post_init() 1 1.323e-05 1.456e-05 1.685e-05 0.00% Castro::post_timestep() 10 1.09e-05 1.337e-05 1.619e-05 0.00% Gravity::set_mass_offset() 10 9.063e-06 1.091e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 6.515e-06 9.695e-06 1.25e-05 0.00% Amr::initSubcycle() 1 9.64e-06 1.038e-05 1.167e-05 0.00% Castro::create_source_corrector() 10 6.756e-06 8.389e-06 1.054e-05 0.00% Castro::computeNewDt() 9 7.607e-06 8.642e-06 9.762e-06 0.00% Castro::FluxRegCrseInit 10 6.214e-06 7.233e-06 8.541e-06 0.00% Castro::retry_advance_ctu() 10 6.211e-06 7.036e-06 8.003e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.648e-06 4.352e-06 6.325e-06 0.00% Castro::computeInitialDt() 2 3.094e-06 3.889e-06 4.597e-06 0.00% Castro::post_regrid() 1 2.176e-06 3.223e-06 4.57e-06 0.00% Amr::InitializeInit() 1 1.776e-06 2.357e-06 4.475e-06 0.00% Castro::FluxRegFineAdd() 10 2.195e-06 2.474e-06 3.243e-06 0.00% Amr::init() 1 1.719e-06 2.328e-06 3.104e-06 0.00% Amr::initialInit() 1 1.391e-06 1.724e-06 2.142e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 9.974e-07 1.124e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.501 3.502 3.502 100.00% Amr::coarseTimeStep() 10 3.3 3.3 3.3 94.24% Amr::timeStep() 10 3.285 3.286 3.289 93.91% Castro::advance() 10 3.269 3.27 3.27 93.38% Castro::subcycle_advance_ctu() 10 3.188 3.192 3.202 91.43% Castro::do_advance_ctu() 10 3.188 3.192 3.202 91.43% Castro::construct_ctu_hydro_source() 10 2.458 2.462 2.464 70.37% Gravity::make_radial_gravity() 21 0.3031 0.3105 0.323 9.22% AmrLevel::FillPatch() 41 0.1814 0.2005 0.2171 6.20% Gravity::get_new_grav_vector() 11 0.2042 0.2054 0.2069 5.91% Castro::construct_old_gravity() 10 0.1839 0.1909 0.2018 5.76% Gravity::get_old_grav_vector() 10 0.1833 0.1903 0.2012 5.75% FillPatchIterator::Initialize 41 0.1515 0.17 0.1935 5.53% Amr::init() 1 0.189 0.1891 0.1891 5.40% Castro::construct_new_gravity() 10 0.1803 0.1807 0.1816 5.19% Amr::initialInit() 1 0.1754 0.1758 0.176 5.03% Castro::initialize_do_advance() 10 0.154 0.1612 0.1667 4.76% FillPatchIterator::FillFromLevel0() 41 0.1086 0.1292 0.1589 4.54% FillPatchSingleLevel 41 0.1085 0.1291 0.1588 4.53% check_for_negative_density() 10 0.0315 0.08575 0.151 4.31% Amr::InitializeInit() 1 0.06847 0.1078 0.1474 4.21% Amr::defBaseLevel() 1 0.06847 0.1078 0.1474 4.21% FabArray::ParallelCopy() 41 0.07703 0.098 0.13 3.71% Castro::initData() 1 0.05275 0.09142 0.1296 3.70% Castro::clean_state() 62 0.1131 0.116 0.1216 3.47% Castro::expand_state() 10 0.09873 0.1076 0.1135 3.24% Castro::estTimeStep() 21 0.02202 0.06719 0.1071 3.06% Amr::FinalizeInit() 1 0.02829 0.06802 0.1071 3.06% Castro::do_old_sources() 10 0.09088 0.09878 0.1049 2.99% FabArray::ParallelCopy_finish() 41 0.03605 0.05811 0.09747 2.78% amrex::Copy() 193 0.06451 0.08003 0.09506 2.71% Castro::computeInitialDt() 2 0.002305 0.04193 0.08113 2.32% Castro::initialize_advance() 10 0.06397 0.07402 0.07809 2.23% FabArray::setVal() 143 0.06315 0.07134 0.07732 2.21% Castro::computeTemp() 63 0.06452 0.06716 0.07066 2.02% Castro::do_new_sources() 10 0.0593 0.06301 0.06835 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04631 0.04766 0.05009 1.43% Castro::reset_internal_energy(Fab) 1008 0.04603 0.04737 0.0498 1.42% Castro::normalize_species() 62 0.04155 0.04226 0.04401 1.26% FabArray::ParallelCopy_nowait() 41 0.03245 0.03982 0.0423 1.21% StateDataPhysBCFunct::() 41 0.02842 0.03104 0.03413 0.97% StateData::FillBoundary(geom) 41 0.02834 0.03094 0.03402 0.97% Castro::construct_new_source() 50 0.0263 0.02963 0.03239 0.93% Gravity::interpolate_monopole_grav() 21 0.02731 0.02918 0.03043 0.87% Castro::post_init() 1 0.02534 0.02575 0.02601 0.74% Castro::construct_new_gravity_source() 10 0.0206 0.02328 0.02589 0.74% Amr::writePlotFile() 2 0.02061 0.02081 0.0212 0.61% Castro::finalize_do_advance() 10 0.01185 0.01711 0.02066 0.59% Castro::post_timestep() 10 0.01533 0.01626 0.01871 0.53% Castro::apply_source_to_state() 20 0.01032 0.01252 0.01376 0.39% FabArray::Saxpy() 20 0.01028 0.01248 0.01372 0.39% VisMF::Write(FabArray) 2 0.008397 0.009289 0.01212 0.35% FabArray::setDomainBndry() 41 0.007127 0.009483 0.01168 0.33% Castro::check_for_nan() 20 0.009632 0.01076 0.01156 0.33% Castro::Castro() 1 0.01032 0.01071 0.01155 0.33% MultiFab::contains_nan() 20 0.009606 0.01073 0.01154 0.33% Castro::construct_old_source() 50 0.006528 0.009336 0.01015 0.29% Castro::construct_old_gravity_source() 10 0.006486 0.009269 0.01007 0.29% Castro::computeNewDt() 9 0.00919 0.009199 0.009203 0.26% Castro::initMFs() 1 0.006211 0.006677 0.008065 0.23% Castro::enforce_min_density() 62 0.007051 0.007374 0.007752 0.22% AmrLevel::AmrLevel(dm) 1 0.0053 0.005498 0.006154 0.18% StateData::define() 4 0.005277 0.005479 0.006136 0.18% Castro::swap_state_time_levels() 10 0.003114 0.004109 0.004876 0.14% Castro::finalize_advance() 10 0.003109 0.003295 0.003499 0.10% Castro::buildMetrics() 1 0.001636 0.001712 0.001874 0.05% Castro::post_regrid() 1 0.001512 0.001615 0.001837 0.05% Amr::InitAmr() 1 0.0003655 0.0003979 0.0005042 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.221e-05 0.0001119 0.0001435 0.00% DistributionMapping::LeastUsedCPUs() 1 7.396e-06 0.0001065 0.0001361 0.00% Castro::enforce_consistent_e() 1 7.691e-05 8.415e-05 9.032e-05 0.00% FabArrayBase::getCPC() 41 6.582e-05 7.283e-05 8.063e-05 0.00% Amr::writeSmallPlotFile() 1 2.985e-05 5.906e-05 7.617e-05 0.00% FabArrayBase::CPC::define() 2 2.116e-05 2.455e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.491e-05 2.725e-05 3.014e-05 0.00% Gravity::set_mass_offset() 10 9.063e-06 1.091e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 6.515e-06 9.695e-06 1.25e-05 0.00% Amr::initSubcycle() 1 9.64e-06 1.038e-05 1.167e-05 0.00% Castro::create_source_corrector() 10 6.756e-06 8.389e-06 1.054e-05 0.00% Castro::FluxRegCrseInit 10 6.214e-06 7.233e-06 8.541e-06 0.00% Castro::retry_advance_ctu() 10 6.211e-06 7.036e-06 8.003e-06 0.00% Castro::FluxRegFineAdd() 10 2.195e-06 2.474e-06 3.243e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 9.974e-07 1.124e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-21-g99b47cb58a3c) finalized