Initializing AMReX (24.02-21-g99b47cb58a3c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-21-g99b47cb58a3c) initialized Starting run at 06:32:55 UTC on 2024-02-20. Successfully read inputs file ... Castro git describe: 24.02-21-g56d243e7a AMReX git describe: 24.02-21-g99b47cb58 Microphysics git describe: 24.02-19-g32b2c42a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015653495 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371900957 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344291994 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.363405991 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330518979 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358064674 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.333995034 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309293031 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308498025 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309392856 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309233281 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007327307 seconds Ending run at 06:32:59 UTC on 2024-02-20. Run time = 3.563455815 Run time without initialization = 3.351967315 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.563 ... 3.564 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2169 2.3633 2.4440 68.58% Gravity::make_radial_gravity() 21 0.2907 0.3019 0.3167 8.89% check_for_negative_density() 10 0.0189 0.1028 0.2533 7.11% Castro::initData() 1 0.04735 0.08775 0.1439 4.04% Castro::estTimeStep() 21 0.02377 0.08924 0.1357 3.81% FabArray::setVal() 143 0.06502 0.07367 0.08737 2.45% amrex::Copy() 193 0.06637 0.07757 0.08683 2.44% FabArray::ParallelCopy_finish() 41 0.03632 0.05213 0.07049 1.98% Castro::reset_internal_energy(Fab) 1008 0.046 0.04798 0.0494 1.39% FabArray::ParallelCopy_nowait() 41 0.03526 0.04157 0.04373 1.23% Castro::normalize_species() 62 0.04165 0.04222 0.04328 1.21% FillPatchIterator::Initialize 41 0.02815 0.03352 0.03578 1.00% StateData::FillBoundary(geom) 41 0.02884 0.03249 0.03568 1.00% Gravity::interpolate_monopole_grav() 21 0.02686 0.0288 0.02957 0.83% Castro::construct_new_gravity_source() 10 0.02198 0.02453 0.02825 0.79% Castro::initialize_do_advance() 10 0.01223 0.01801 0.0223 0.63% Castro::computeTemp() 63 0.0189 0.0198 0.02026 0.57% Castro::initialize_advance() 10 0.009516 0.01194 0.01447 0.41% VisMF::Write(FabArray) 2 0.008921 0.009674 0.01371 0.38% FabArray::Saxpy() 20 0.0122 0.01294 0.01351 0.38% FabArray::setDomainBndry() 41 0.006822 0.01069 0.01348 0.38% MultiFab::contains_nan() 20 0.01013 0.01111 0.01191 0.33% Amr::writePlotFile() 2 0.006536 0.01051 0.01161 0.33% Castro::construct_old_gravity_source() 10 0.006825 0.009397 0.0103 0.29% Castro::initMFs() 1 0.00657 0.007024 0.007754 0.22% Castro::enforce_min_density() 62 0.005881 0.006204 0.006642 0.19% Castro::construct_new_source() 50 0.005471 0.006173 0.00637 0.18% StateData::define() 4 0.005416 0.005697 0.006068 0.17% Gravity::get_new_grav_vector() 11 0.002776 0.003974 0.005646 0.16% main() 1 0.003884 0.004628 0.005258 0.15% Castro::swap_state_time_levels() 10 0.003389 0.004527 0.005108 0.14% Amr::coarseTimeStep() 10 0.001624 0.00259 0.003558 0.10% Gravity::get_old_grav_vector() 10 0.001496 0.001919 0.002259 0.06% Castro::buildMetrics() 1 0.001534 0.001611 0.001728 0.05% Castro::finalize_do_advance() 10 0.0004835 0.00109 0.001377 0.04% AmrLevel::FillPatch() 41 0.0007968 0.0009486 0.001105 0.03% Amr::InitAmr() 1 0.0003413 0.0003865 0.0005512 0.02% Amr::timeStep() 10 0.0001767 0.0002101 0.0003422 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002815 0.0002996 0.0003402 0.01% Castro::clean_state() 62 0.0001393 0.000194 0.0002379 0.01% DistributionMapping::LeastUsedCPUs() 1 9.202e-06 0.0001803 0.00022 0.01% Castro::do_advance_ctu() 10 0.0001343 0.0001537 0.0001791 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001009 0.000118 0.0001606 0.00% StateDataPhysBCFunct::() 41 9.939e-05 0.0001049 0.0001189 0.00% Castro::do_old_sources() 10 9.283e-05 9.973e-05 0.000115 0.00% Castro::finalize_advance() 10 7.98e-05 9.532e-05 0.0001033 0.00% Castro::enforce_consistent_e() 1 8.766e-05 9.313e-05 0.0001018 0.00% FabArray::ParallelCopy() 41 7.397e-05 8.183e-05 9.374e-05 0.00% Castro::Castro() 1 5.614e-05 7.53e-05 9.353e-05 0.00% FillPatchSingleLevel 41 6.845e-05 7.545e-05 8.539e-05 0.00% Castro::construct_old_source() 50 6.36e-05 7.214e-05 8.148e-05 0.00% FabArrayBase::getCPC() 41 4.101e-05 5.452e-05 7.662e-05 0.00% Amr::writeSmallPlotFile() 1 2.985e-05 5.171e-05 7.474e-05 0.00% Amr::FinalizeInit() 1 3.736e-06 1.348e-05 7.412e-05 0.00% Castro::do_new_sources() 10 5.663e-05 6.431e-05 7.256e-05 0.00% Castro::advance() 10 3.989e-05 4.796e-05 5.823e-05 0.00% Castro::construct_new_gravity() 10 3.554e-05 4.53e-05 5.741e-05 0.00% Castro::subcycle_advance_ctu() 10 4.058e-05 4.73e-05 5.475e-05 0.00% Castro::apply_source_to_state() 20 4.359e-05 4.834e-05 5.197e-05 0.00% Castro::construct_old_gravity() 10 3.511e-05 4.097e-05 4.683e-05 0.00% Castro::enforce_speed_limit() 62 2.515e-05 3.012e-05 3.858e-05 0.00% Castro::expand_state() 10 2.212e-05 2.666e-05 3.351e-05 0.00% FabArrayBase::CPC::define() 2 1.943e-05 2.509e-05 3.182e-05 0.00% Castro::check_for_nan() 20 2.268e-05 2.502e-05 2.939e-05 0.00% Amr::defBaseLevel() 1 1.739e-05 1.928e-05 2.106e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.579e-05 1.813e-05 2.089e-05 0.00% Castro::post_init() 1 1.542e-05 1.671e-05 2.027e-05 0.00% Castro::post_timestep() 10 1.204e-05 1.408e-05 1.582e-05 0.00% Gravity::set_mass_offset() 10 9.657e-06 1.187e-05 1.374e-05 0.00% Gravity::swapTimeLevels() 10 9.004e-06 1.085e-05 1.335e-05 0.00% Amr::initSubcycle() 1 9.443e-06 1.021e-05 1.11e-05 0.00% Castro::create_source_corrector() 10 6.882e-06 9.002e-06 1.076e-05 0.00% Amr::initialInit() 1 1.444e-06 2.866e-06 9.914e-06 0.00% Castro::retry_advance_ctu() 10 6.954e-06 7.827e-06 9.751e-06 0.00% Castro::computeNewDt() 9 8.074e-06 8.859e-06 9.743e-06 0.00% Castro::FluxRegCrseInit 10 5.311e-06 7.482e-06 9.103e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.63e-06 4.42e-06 5.438e-06 0.00% Amr::InitializeInit() 1 1.902e-06 2.434e-06 4.976e-06 0.00% Castro::computeInitialDt() 2 3.767e-06 4.211e-06 4.813e-06 0.00% Castro::post_regrid() 1 2.058e-06 3.534e-06 4.503e-06 0.00% Amr::init() 1 2.08e-06 2.441e-06 2.93e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.327e-06 2.875e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.026e-06 1.223e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.563 3.564 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 93.71% Amr::timeStep() 10 3.325 3.326 3.327 93.37% Castro::advance() 10 3.31 3.311 3.311 92.92% Castro::subcycle_advance_ctu() 10 3.221 3.23 3.237 90.84% Castro::do_advance_ctu() 10 3.221 3.23 3.237 90.84% Castro::construct_ctu_hydro_source() 10 2.484 2.488 2.495 70.02% Gravity::make_radial_gravity() 21 0.3071 0.318 0.3309 9.29% check_for_negative_density() 10 0.0189 0.1028 0.2533 7.11% AmrLevel::FillPatch() 41 0.1785 0.2017 0.2179 6.11% Gravity::get_new_grav_vector() 11 0.2105 0.2145 0.2178 6.11% Amr::init() 1 0.2108 0.211 0.211 5.92% Castro::construct_old_gravity() 10 0.178 0.186 0.1974 5.54% Gravity::get_old_grav_vector() 10 0.1774 0.1854 0.1969 5.53% Amr::initialInit() 1 0.1949 0.1952 0.1956 5.49% Castro::construct_new_gravity() 10 0.1857 0.1891 0.1917 5.38% Castro::initialize_do_advance() 10 0.1535 0.1711 0.1853 5.20% FillPatchIterator::Initialize 41 0.1505 0.1709 0.1852 5.20% Amr::InitializeInit() 1 0.06786 0.1087 0.1659 4.66% Amr::defBaseLevel() 1 0.06786 0.1087 0.1659 4.66% Castro::initData() 1 0.05167 0.09179 0.1478 4.15% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1266 0.1366 3.83% FillPatchSingleLevel 41 0.1147 0.1265 0.1364 3.83% Castro::estTimeStep() 21 0.02377 0.08924 0.1357 3.81% Castro::expand_state() 10 0.09989 0.1163 0.1313 3.68% Amr::FinalizeInit() 1 0.02974 0.08647 0.1272 3.57% Castro::clean_state() 62 0.112 0.1158 0.1183 3.32% FabArray::ParallelCopy() 41 0.07935 0.09386 0.106 2.97% Castro::computeInitialDt() 2 0.002578 0.05973 0.1006 2.82% Castro::do_old_sources() 10 0.08797 0.09307 0.09707 2.72% FabArray::setVal() 143 0.06502 0.07367 0.08737 2.45% amrex::Copy() 193 0.06637 0.07757 0.08683 2.44% Castro::initialize_advance() 10 0.06966 0.07634 0.08546 2.40% Castro::do_new_sources() 10 0.05909 0.06527 0.0739 2.07% FabArray::ParallelCopy_finish() 41 0.03632 0.05213 0.07049 1.98% Castro::computeTemp() 63 0.06518 0.06807 0.06993 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04628 0.04828 0.0497 1.39% Castro::reset_internal_energy(Fab) 1008 0.046 0.04798 0.0494 1.39% FabArray::ParallelCopy_nowait() 41 0.03536 0.04165 0.04379 1.23% Castro::normalize_species() 62 0.04165 0.04222 0.04328 1.21% StateDataPhysBCFunct::() 41 0.02895 0.0326 0.03577 1.00% StateData::FillBoundary(geom) 41 0.02884 0.03249 0.03568 1.00% Castro::construct_new_source() 50 0.02831 0.0307 0.03447 0.97% Gravity::interpolate_monopole_grav() 21 0.02686 0.0288 0.02957 0.83% Castro::construct_new_gravity_source() 10 0.02198 0.02453 0.02825 0.79% Castro::finalize_do_advance() 10 0.0128 0.02152 0.02796 0.78% Castro::post_init() 1 0.0262 0.0265 0.02675 0.75% Amr::writePlotFile() 2 0.02274 0.02316 0.02353 0.66% Castro::post_timestep() 10 0.0152 0.01567 0.01596 0.45% VisMF::Write(FabArray) 2 0.008921 0.009674 0.01371 0.38% Castro::apply_source_to_state() 20 0.01225 0.01299 0.01355 0.38% FabArray::Saxpy() 20 0.0122 0.01294 0.01351 0.38% FabArray::setDomainBndry() 41 0.006822 0.01069 0.01348 0.38% Castro::check_for_nan() 20 0.01016 0.01113 0.01194 0.34% MultiFab::contains_nan() 20 0.01013 0.01111 0.01191 0.33% Castro::Castro() 1 0.01051 0.01103 0.01182 0.33% Castro::construct_old_source() 50 0.006889 0.009469 0.01038 0.29% Castro::construct_old_gravity_source() 10 0.006825 0.009397 0.0103 0.29% Castro::computeNewDt() 9 0.009097 0.009103 0.00911 0.26% Castro::initMFs() 1 0.00657 0.007024 0.007754 0.22% Castro::enforce_min_density() 62 0.005881 0.006204 0.006642 0.19% AmrLevel::AmrLevel(dm) 1 0.005431 0.005715 0.006089 0.17% StateData::define() 4 0.005416 0.005697 0.006068 0.17% Castro::swap_state_time_levels() 10 0.003389 0.004527 0.005108 0.14% Castro::finalize_advance() 10 0.002973 0.003665 0.004567 0.13% Castro::buildMetrics() 1 0.001661 0.00175 0.001885 0.05% Castro::post_regrid() 1 0.001489 0.001592 0.001774 0.05% Amr::InitAmr() 1 0.0003511 0.0003967 0.0005623 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.476e-05 0.0001858 0.0002264 0.01% DistributionMapping::LeastUsedCPUs() 1 9.202e-06 0.0001803 0.00022 0.01% FabArrayBase::getCPC() 41 6.188e-05 7.961e-05 0.0001046 0.00% Castro::enforce_consistent_e() 1 8.766e-05 9.313e-05 0.0001018 0.00% Amr::writeSmallPlotFile() 1 2.985e-05 5.171e-05 7.474e-05 0.00% Castro::enforce_speed_limit() 62 2.515e-05 3.012e-05 3.858e-05 0.00% FabArrayBase::CPC::define() 2 1.943e-05 2.509e-05 3.182e-05 0.00% Gravity::set_mass_offset() 10 9.657e-06 1.187e-05 1.374e-05 0.00% Gravity::swapTimeLevels() 10 9.004e-06 1.085e-05 1.335e-05 0.00% Amr::initSubcycle() 1 9.443e-06 1.021e-05 1.11e-05 0.00% Castro::create_source_corrector() 10 6.882e-06 9.002e-06 1.076e-05 0.00% Castro::retry_advance_ctu() 10 6.954e-06 7.827e-06 9.751e-06 0.00% Castro::FluxRegCrseInit 10 5.311e-06 7.482e-06 9.103e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.327e-06 2.875e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.026e-06 1.223e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-21-g99b47cb58a3c) finalized