Initializing AMReX (24.02-25-g2230caa24c7d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-25-g2230caa24c7d) initialized Starting run at 06:41:58 UTC on 2024-02-21. Successfully read inputs file ... Castro git describe: 24.02-21-g56d243e7a AMReX git describe: 24.02-25-g2230caa24 Microphysics git describe: 24.02-22-g4f2ee5fd reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012705714 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366860635 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341204244 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.322221717 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324184796 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.322906817 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.362596659 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316109674 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307818083 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309751736 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308117188 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007359562 seconds Ending run at 06:42:01 UTC on 2024-02-21. Run time = 3.492677719 Run time without initialization = 3.295057546 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.491 ... 3.492 ... 3.493 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3345 2.3494 2.3666 67.76% Gravity::make_radial_gravity() 21 0.2848 0.2905 0.3062 8.77% Castro::initData() 1 0.04861 0.08808 0.1338 3.83% Castro::estTimeStep() 21 0.02349 0.07421 0.1177 3.37% FabArray::ParallelCopy_finish() 41 0.0424 0.06209 0.09862 2.82% amrex::Copy() 193 0.06451 0.0812 0.09705 2.78% check_for_negative_density() 10 0.05886 0.07579 0.09267 2.65% FabArray::setVal() 143 0.06281 0.07067 0.07832 2.24% Castro::reset_internal_energy(Fab) 1008 0.04619 0.04731 0.04839 1.39% Castro::normalize_species() 62 0.04106 0.04169 0.04237 1.21% FabArray::ParallelCopy_nowait() 41 0.03429 0.03994 0.0417 1.19% FillPatchIterator::Initialize 41 0.02702 0.03151 0.03531 1.01% StateData::FillBoundary(geom) 41 0.02843 0.03067 0.03436 0.98% Gravity::interpolate_monopole_grav() 21 0.02728 0.02922 0.03172 0.91% Castro::construct_new_gravity_source() 10 0.02147 0.02317 0.02483 0.71% Castro::computeTemp() 63 0.01917 0.01965 0.02019 0.58% Castro::initialize_do_advance() 10 0.0118 0.01684 0.0184 0.53% Castro::initialize_advance() 10 0.009102 0.01218 0.01534 0.44% FabArray::Saxpy() 20 0.01023 0.01244 0.01404 0.40% FabArray::setDomainBndry() 41 0.006862 0.009704 0.01236 0.35% MultiFab::contains_nan() 20 0.009594 0.01057 0.01183 0.34% VisMF::Write(FabArray) 2 0.008828 0.009464 0.01178 0.34% Castro::construct_old_gravity_source() 10 0.006585 0.009271 0.01029 0.29% Amr::writePlotFile() 2 0.005733 0.008034 0.008536 0.24% Castro::initMFs() 1 0.006152 0.006749 0.008051 0.23% Castro::enforce_min_density() 62 0.007081 0.007409 0.007616 0.22% Castro::construct_new_source() 50 0.005826 0.006411 0.006917 0.20% StateData::define() 4 0.005137 0.005571 0.005854 0.17% main() 1 0.003747 0.004626 0.005165 0.15% Castro::swap_state_time_levels() 10 0.003154 0.004149 0.004385 0.13% Gravity::get_new_grav_vector() 11 0.002776 0.003472 0.003876 0.11% Gravity::get_old_grav_vector() 10 0.001544 0.002011 0.002467 0.07% Amr::coarseTimeStep() 10 0.001088 0.001657 0.002061 0.06% Castro::buildMetrics() 1 0.001439 0.001558 0.001675 0.05% Castro::finalize_do_advance() 10 0.0004989 0.001085 0.00139 0.04% AmrLevel::FillPatch() 41 0.0008254 0.001026 0.00112 0.03% Amr::InitAmr() 1 0.0003531 0.0004007 0.0005374 0.02% Amr::timeStep() 10 0.0001358 0.0002172 0.000432 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002812 0.000297 0.0003534 0.01% DistributionMapping::LeastUsedCPUs() 1 6.861e-06 0.0001388 0.0001962 0.01% Castro::clean_state() 62 0.0001507 0.0001706 0.0001953 0.01% Castro::do_advance_ctu() 10 0.0001356 0.0001544 0.0001808 0.01% StateDataPhysBCFunct::() 41 9.337e-05 0.000131 0.0001588 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001205 0.0001463 0.00% Castro::finalize_advance() 10 8.351e-05 9.748e-05 0.0001184 0.00% Castro::enforce_consistent_e() 1 7.545e-05 9.32e-05 0.0001176 0.00% Castro::do_old_sources() 10 7.578e-05 9.648e-05 0.0001138 0.00% FabArray::ParallelCopy() 41 6.559e-05 8.373e-05 9.478e-05 0.00% FillPatchSingleLevel 41 6.787e-05 7.667e-05 9.351e-05 0.00% Castro::construct_old_source() 50 5.676e-05 6.971e-05 8.614e-05 0.00% Amr::writeSmallPlotFile() 1 3.009e-05 6.573e-05 8.461e-05 0.00% Castro::Castro() 1 5.895e-05 6.686e-05 8.115e-05 0.00% Amr::FinalizeInit() 1 3.71e-06 1.461e-05 7.787e-05 0.00% Castro::do_new_sources() 10 5.782e-05 6.489e-05 7.36e-05 0.00% FabArrayBase::getCPC() 41 4.475e-05 5.114e-05 6.063e-05 0.00% Castro::apply_source_to_state() 20 3.603e-05 4.502e-05 6.029e-05 0.00% Castro::subcycle_advance_ctu() 10 3.852e-05 4.587e-05 5.643e-05 0.00% Castro::construct_new_gravity() 10 2.998e-05 3.668e-05 5.395e-05 0.00% Castro::advance() 10 3.888e-05 4.464e-05 4.962e-05 0.00% Castro::construct_old_gravity() 10 3.303e-05 3.773e-05 4.547e-05 0.00% Castro::enforce_speed_limit() 62 2.519e-05 3.12e-05 3.528e-05 0.00% Castro::expand_state() 10 2.312e-05 2.491e-05 2.954e-05 0.00% FabArrayBase::CPC::define() 2 2.312e-05 2.535e-05 2.852e-05 0.00% Castro::check_for_nan() 20 2.163e-05 2.376e-05 2.768e-05 0.00% Castro::post_init() 1 1.422e-05 1.728e-05 2.748e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.514e-05 2.207e-05 2.647e-05 0.00% Amr::defBaseLevel() 1 1.678e-05 1.901e-05 2.231e-05 0.00% Castro::post_timestep() 10 1.352e-05 1.602e-05 1.962e-05 0.00% Amr::initSubcycle() 1 1.034e-05 1.279e-05 1.915e-05 0.00% Gravity::swapTimeLevels() 10 7.445e-06 8.858e-06 1.315e-05 0.00% Gravity::set_mass_offset() 10 8.251e-06 1.035e-05 1.246e-05 0.00% Castro::computeNewDt() 9 7.413e-06 9.201e-06 1.126e-05 0.00% Castro::create_source_corrector() 10 6.594e-06 8.45e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 6.836e-06 8.132e-06 9.402e-06 0.00% Castro::retry_advance_ctu() 10 6.257e-06 7.036e-06 7.973e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.035e-06 4.783e-06 6.556e-06 0.00% Amr::InitializeInit() 1 2.027e-06 2.693e-06 4.763e-06 0.00% Castro::computeInitialDt() 2 3.27e-06 3.641e-06 4.645e-06 0.00% Castro::post_regrid() 1 1.64e-06 3.115e-06 3.965e-06 0.00% Amr::init() 1 1.613e-06 2.43e-06 3.224e-06 0.00% Castro::FluxRegFineAdd() 10 1.963e-06 2.238e-06 2.634e-06 0.00% Amr::initialInit() 1 1.4e-06 1.782e-06 2.169e-06 0.00% DistributionMapping::Distribute() 1 9.73e-07 1.176e-06 2.069e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.491 3.492 3.493 100.00% Amr::coarseTimeStep() 10 3.283 3.283 3.283 93.98% Amr::timeStep() 10 3.27 3.271 3.271 93.66% Castro::advance() 10 3.254 3.255 3.255 93.20% Castro::subcycle_advance_ctu() 10 3.172 3.177 3.185 91.18% Castro::do_advance_ctu() 10 3.172 3.177 3.185 91.18% Castro::construct_ctu_hydro_source() 10 2.44 2.446 2.449 70.11% Gravity::make_radial_gravity() 21 0.3019 0.3071 0.3193 9.14% AmrLevel::FillPatch() 41 0.1824 0.2063 0.2225 6.37% Gravity::get_new_grav_vector() 11 0.2038 0.2055 0.2068 5.92% FillPatchIterator::Initialize 41 0.152 0.1744 0.1983 5.68% Amr::init() 1 0.1969 0.1971 0.1971 5.64% Castro::construct_old_gravity() 10 0.1816 0.1869 0.1967 5.63% Gravity::get_old_grav_vector() 10 0.181 0.1863 0.1961 5.62% Amr::initialInit() 1 0.184 0.1843 0.1845 5.28% Castro::construct_new_gravity() 10 0.1797 0.1807 0.1818 5.20% Castro::initialize_do_advance() 10 0.1552 0.1603 0.166 4.75% FillPatchIterator::FillFromLevel0() 41 0.115 0.1332 0.1644 4.71% FillPatchSingleLevel 41 0.1149 0.1331 0.1642 4.70% Amr::InitializeInit() 1 0.06837 0.1083 0.1557 4.46% Amr::defBaseLevel() 1 0.06837 0.1083 0.1557 4.46% Castro::initData() 1 0.05229 0.092 0.1379 3.95% FabArray::ParallelCopy() 41 0.08375 0.1022 0.1331 3.81% Castro::clean_state() 62 0.1135 0.1157 0.118 3.38% Castro::estTimeStep() 21 0.02349 0.07421 0.1177 3.37% Amr::FinalizeInit() 1 0.02854 0.07597 0.1157 3.31% Castro::do_old_sources() 10 0.09557 0.1059 0.1116 3.20% Castro::expand_state() 10 0.1009 0.1065 0.1115 3.19% FabArray::ParallelCopy_finish() 41 0.0424 0.06209 0.09862 2.82% amrex::Copy() 193 0.06451 0.0812 0.09705 2.78% check_for_negative_density() 10 0.05886 0.07579 0.09267 2.65% Castro::computeInitialDt() 2 0.0023 0.04965 0.08945 2.56% Castro::initialize_advance() 10 0.06594 0.07427 0.07926 2.27% FabArray::setVal() 143 0.06281 0.07067 0.07832 2.24% Castro::computeTemp() 63 0.0659 0.06726 0.06878 1.97% Castro::do_new_sources() 10 0.0593 0.06236 0.06732 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04647 0.04761 0.0487 1.39% Castro::reset_internal_energy(Fab) 1008 0.04619 0.04731 0.04839 1.39% Castro::normalize_species() 62 0.04106 0.04169 0.04237 1.21% FabArray::ParallelCopy_nowait() 41 0.03438 0.04002 0.04177 1.20% StateDataPhysBCFunct::() 41 0.02854 0.0308 0.0345 0.99% StateData::FillBoundary(geom) 41 0.02843 0.03067 0.03436 0.98% Castro::construct_new_source() 50 0.02729 0.02958 0.03175 0.91% Gravity::interpolate_monopole_grav() 21 0.02728 0.02922 0.03172 0.91% Castro::post_init() 1 0.02577 0.02597 0.02612 0.75% Castro::construct_new_gravity_source() 10 0.02147 0.02317 0.02483 0.71% Castro::finalize_do_advance() 10 0.01155 0.01663 0.02059 0.59% Amr::writePlotFile() 2 0.02006 0.02022 0.0204 0.58% Castro::post_timestep() 10 0.01509 0.0158 0.0163 0.47% Castro::apply_source_to_state() 20 0.01027 0.01248 0.0141 0.40% FabArray::Saxpy() 20 0.01023 0.01244 0.01404 0.40% FabArray::setDomainBndry() 41 0.006862 0.009704 0.01236 0.35% Castro::check_for_nan() 20 0.009622 0.0106 0.01185 0.34% MultiFab::contains_nan() 20 0.009594 0.01057 0.01183 0.34% VisMF::Write(FabArray) 2 0.008828 0.009464 0.01178 0.34% Castro::Castro() 1 0.00954 0.01054 0.01173 0.34% Castro::construct_old_source() 50 0.006642 0.009341 0.01038 0.30% Castro::construct_old_gravity_source() 10 0.006585 0.009271 0.01029 0.29% Castro::computeNewDt() 9 0.00901 0.009016 0.009022 0.26% Castro::initMFs() 1 0.006152 0.006749 0.008051 0.23% Castro::enforce_min_density() 62 0.007081 0.007409 0.007616 0.22% AmrLevel::AmrLevel(dm) 1 0.005152 0.005593 0.00588 0.17% StateData::define() 4 0.005137 0.005571 0.005854 0.17% Castro::swap_state_time_levels() 10 0.003154 0.004149 0.004385 0.13% Castro::finalize_advance() 10 0.003032 0.003265 0.003446 0.10% Castro::buildMetrics() 1 0.001548 0.001692 0.001822 0.05% Castro::post_regrid() 1 0.00154 0.001605 0.001651 0.05% Amr::InitAmr() 1 0.0003634 0.0004135 0.000549 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.208e-05 0.0001447 0.0002026 0.01% DistributionMapping::LeastUsedCPUs() 1 6.861e-06 0.0001388 0.0001962 0.01% Castro::enforce_consistent_e() 1 7.545e-05 9.32e-05 0.0001176 0.00% FabArrayBase::getCPC() 41 6.813e-05 7.648e-05 8.906e-05 0.00% Amr::writeSmallPlotFile() 1 3.009e-05 6.573e-05 8.461e-05 0.00% Castro::enforce_speed_limit() 62 2.519e-05 3.12e-05 3.528e-05 0.00% FabArrayBase::CPC::define() 2 2.312e-05 2.535e-05 2.852e-05 0.00% Amr::initSubcycle() 1 1.034e-05 1.279e-05 1.915e-05 0.00% Gravity::swapTimeLevels() 10 7.445e-06 8.858e-06 1.315e-05 0.00% Gravity::set_mass_offset() 10 8.251e-06 1.035e-05 1.246e-05 0.00% Castro::create_source_corrector() 10 6.594e-06 8.45e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 6.836e-06 8.132e-06 9.402e-06 0.00% Castro::retry_advance_ctu() 10 6.257e-06 7.036e-06 7.973e-06 0.00% Castro::FluxRegFineAdd() 10 1.963e-06 2.238e-06 2.634e-06 0.00% DistributionMapping::Distribute() 1 9.73e-07 1.176e-06 2.069e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-25-g2230caa24c7d) finalized