Initializing AMReX (24.02-30-g2ecafcff4013)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-30-g2ecafcff4013) initialized Starting run at 06:33:14 UTC on 2024-02-23. Successfully read inputs file ... Castro git describe: 24.02-21-g56d243e7a AMReX git describe: 24.02-30-g2ecafcff4 Microphysics git describe: 24.02-23-g3df6ba0c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015203302 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35559338 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.331393146 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330281518 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33643314 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360478737 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34261246 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31058979 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309304532 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310111609 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.372314933 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008249682 seconds Ending run at 06:33:18 UTC on 2024-02-23. Run time = 3.622486388 Run time without initialization = 3.374313749 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.621 ... 3.622 ... 3.623 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3162 2.3627 2.4329 67.16% Gravity::make_radial_gravity() 21 0.3046 0.3191 0.3332 9.20% check_for_negative_density() 10 0.05287 0.1224 0.1689 4.66% Castro::estTimeStep() 21 0.04269 0.1116 0.1669 4.61% Castro::initData() 1 0.05061 0.09577 0.1649 4.55% amrex::Copy() 193 0.06401 0.07533 0.08774 2.42% FabArray::setVal() 143 0.06077 0.07002 0.08449 2.33% FabArray::ParallelCopy_finish() 41 0.03502 0.05651 0.08438 2.33% Castro::reset_internal_energy(Fab) 1008 0.04416 0.04779 0.05072 1.40% Castro::normalize_species() 62 0.04152 0.04251 0.04351 1.20% FabArray::ParallelCopy_nowait() 41 0.03491 0.0395 0.04071 1.12% StateData::FillBoundary(geom) 41 0.02987 0.03184 0.03662 1.01% FillPatchIterator::Initialize 41 0.02771 0.03162 0.03392 0.94% Gravity::interpolate_monopole_grav() 21 0.02727 0.02954 0.0314 0.87% Castro::construct_new_gravity_source() 10 0.02155 0.02466 0.02837 0.78% Castro::computeTemp() 63 0.01757 0.01962 0.02141 0.59% Castro::initialize_do_advance() 10 0.01213 0.01698 0.02095 0.58% VisMF::Write(FabArray) 2 0.008695 0.009924 0.01448 0.40% Castro::initialize_advance() 10 0.004139 0.01006 0.01433 0.40% Amr::writePlotFile() 2 0.006737 0.01138 0.01344 0.37% FabArray::Saxpy() 20 0.01048 0.01222 0.01296 0.36% FabArray::setDomainBndry() 41 0.00676 0.01061 0.01284 0.35% MultiFab::contains_nan() 20 0.01016 0.01101 0.01216 0.34% Castro::initMFs() 1 0.006215 0.007414 0.00983 0.27% Castro::construct_old_gravity_source() 10 0.00677 0.00914 0.009772 0.27% StateData::define() 4 0.005227 0.006122 0.008025 0.22% Castro::enforce_min_density() 62 0.005549 0.006062 0.006632 0.18% Castro::construct_new_source() 50 0.005649 0.006076 0.006413 0.18% main() 1 0.004135 0.00559 0.006148 0.17% Castro::swap_state_time_levels() 10 0.003158 0.004187 0.004441 0.12% Gravity::get_new_grav_vector() 11 0.002874 0.003381 0.003996 0.11% Amr::coarseTimeStep() 10 0.001546 0.002612 0.003798 0.10% Castro::buildMetrics() 1 0.001469 0.001725 0.002271 0.06% Gravity::get_old_grav_vector() 10 0.001564 0.001871 0.002086 0.06% Castro::finalize_do_advance() 10 0.0005043 0.001115 0.001399 0.04% AmrLevel::FillPatch() 41 0.0007106 0.0008916 0.001033 0.03% Castro::construct_new_gravity() 10 3.269e-05 0.0001224 0.0006806 0.02% Amr::InitAmr() 1 0.0003434 0.0004519 0.0006625 0.02% Amr::timeStep() 10 0.0001475 0.000212 0.000484 0.01% DistributionMapping::LeastUsedCPUs() 1 6.752e-06 0.000243 0.0003542 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0002895 0.0002987 0.01% Castro::clean_state() 62 0.0001415 0.0001736 0.0002335 0.01% Castro::do_advance_ctu() 10 0.0001189 0.0001401 0.000167 0.00% Castro::enforce_consistent_e() 1 7.751e-05 9.634e-05 0.000141 0.00% StateDataPhysBCFunct::() 41 9.02e-05 0.0001031 0.0001383 0.00% FillPatchIterator::FillFromLevel0() 41 9.453e-05 0.0001095 0.0001286 0.00% Castro::finalize_advance() 10 7.336e-05 9.349e-05 0.0001094 0.00% Castro::do_old_sources() 10 7.335e-05 8.861e-05 0.0001043 0.00% Castro::Castro() 1 5.174e-05 7.129e-05 9.753e-05 0.00% FabArray::ParallelCopy() 41 6.601e-05 7.606e-05 8.716e-05 0.00% Castro::construct_old_source() 50 5.706e-05 7.176e-05 8.513e-05 0.00% Castro::do_new_sources() 10 5.03e-05 6.237e-05 7.599e-05 0.00% FillPatchSingleLevel 41 6.094e-05 7.012e-05 7.574e-05 0.00% Amr::writeSmallPlotFile() 1 3.24e-05 5.311e-05 6.984e-05 0.00% Amr::FinalizeInit() 1 3.737e-06 1.331e-05 6.946e-05 0.00% Castro::subcycle_advance_ctu() 10 4.307e-05 5.078e-05 6.381e-05 0.00% FabArrayBase::getCPC() 41 3.925e-05 5.261e-05 6.378e-05 0.00% Castro::advance() 10 3.581e-05 4.715e-05 5.768e-05 0.00% Castro::apply_source_to_state() 20 3.948e-05 4.625e-05 5.512e-05 0.00% Castro::check_for_nan() 20 2.339e-05 2.832e-05 5.472e-05 0.00% Castro::construct_old_gravity() 10 2.783e-05 3.37e-05 3.697e-05 0.00% FabArrayBase::CPC::define() 2 2.045e-05 2.683e-05 3.368e-05 0.00% Castro::expand_state() 10 2.08e-05 2.486e-05 3.362e-05 0.00% Castro::enforce_speed_limit() 62 2.435e-05 2.763e-05 3.151e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.887e-05 2.248e-05 2.952e-05 0.00% Amr::defBaseLevel() 1 1.585e-05 1.934e-05 2.615e-05 0.00% Castro::post_timestep() 10 1.331e-05 1.673e-05 2.506e-05 0.00% Castro::post_init() 1 1.425e-05 1.748e-05 2.246e-05 0.00% Amr::initSubcycle() 1 9.379e-06 1.178e-05 1.69e-05 0.00% Gravity::set_mass_offset() 10 9.577e-06 1.137e-05 1.397e-05 0.00% Gravity::swapTimeLevels() 10 7.036e-06 1.006e-05 1.186e-05 0.00% Castro::computeNewDt() 9 7.36e-06 8.56e-06 1.031e-05 0.00% Castro::create_source_corrector() 10 6.479e-06 8.428e-06 9.838e-06 0.00% Amr::initialInit() 1 1.221e-06 2.743e-06 9.086e-06 0.00% Castro::FluxRegCrseInit 10 6.506e-06 7.738e-06 8.62e-06 0.00% Amr::init() 1 1.992e-06 3.022e-06 8.412e-06 0.00% Castro::retry_advance_ctu() 10 6.92e-06 7.478e-06 8.299e-06 0.00% Castro::post_regrid() 1 2.268e-06 4.061e-06 8.271e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.524e-06 5.052e-06 6.451e-06 0.00% Amr::InitializeInit() 1 1.612e-06 2.47e-06 5.199e-06 0.00% Castro::computeInitialDt() 2 3.312e-06 4.206e-06 5.005e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.472e-06 2.944e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.116e-06 1.498e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.621 3.622 3.623 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 92.75% Amr::timeStep() 10 3.345 3.346 3.347 92.40% Castro::advance() 10 3.329 3.33 3.331 91.96% Castro::subcycle_advance_ctu() 10 3.243 3.255 3.262 90.04% Castro::do_advance_ctu() 10 3.243 3.254 3.262 90.04% Castro::construct_ctu_hydro_source() 10 2.502 2.507 2.511 69.33% Gravity::make_radial_gravity() 21 0.3259 0.3347 0.3462 9.56% Amr::init() 1 0.2473 0.2476 0.2477 6.84% Gravity::get_new_grav_vector() 11 0.2295 0.2329 0.2354 6.50% Amr::initialInit() 1 0.2314 0.2321 0.2327 6.42% AmrLevel::FillPatch() 41 0.1778 0.2006 0.2145 5.92% Castro::construct_new_gravity() 10 0.1943 0.1976 0.1997 5.51% Castro::construct_old_gravity() 10 0.1779 0.1858 0.1954 5.39% Gravity::get_old_grav_vector() 10 0.1769 0.1852 0.1949 5.38% Amr::InitializeInit() 1 0.07002 0.1173 0.1919 5.30% Amr::defBaseLevel() 1 0.07002 0.1173 0.1919 5.30% FillPatchIterator::Initialize 41 0.1488 0.1705 0.184 5.08% Castro::initialize_do_advance() 10 0.156 0.1682 0.1802 4.98% Castro::initData() 1 0.05414 0.09981 0.1699 4.69% check_for_negative_density() 10 0.05287 0.1224 0.1689 4.66% Castro::estTimeStep() 21 0.04269 0.1116 0.1669 4.61% Amr::FinalizeInit() 1 0.04078 0.1148 0.1622 4.48% FillPatchIterator::FillFromLevel0() 41 0.112 0.1283 0.1496 4.13% FillPatchSingleLevel 41 0.1119 0.1282 0.1495 4.13% Castro::expand_state() 10 0.1002 0.1147 0.1259 3.47% Castro::computeInitialDt() 2 0.003529 0.07838 0.1256 3.47% Castro::clean_state() 62 0.1092 0.1154 0.1206 3.33% FabArray::ParallelCopy() 41 0.07565 0.09617 0.1194 3.30% Castro::do_old_sources() 10 0.08623 0.09065 0.09358 2.58% amrex::Copy() 193 0.06401 0.07533 0.08774 2.42% FabArray::setVal() 143 0.06077 0.07002 0.08449 2.33% FabArray::ParallelCopy_finish() 41 0.03502 0.05651 0.08438 2.33% Castro::initialize_advance() 10 0.06431 0.07194 0.08372 2.31% Castro::do_new_sources() 10 0.05728 0.06471 0.07502 2.07% Castro::computeTemp() 63 0.06203 0.0677 0.07193 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04446 0.04808 0.05101 1.41% Castro::reset_internal_energy(Fab) 1008 0.04416 0.04779 0.05072 1.40% Castro::normalize_species() 62 0.04152 0.04251 0.04351 1.20% FabArray::ParallelCopy_nowait() 41 0.035 0.03958 0.04078 1.13% Castro::post_init() 1 0.03586 0.0364 0.03686 1.02% StateDataPhysBCFunct::() 41 0.02997 0.03195 0.03675 1.01% StateData::FillBoundary(geom) 41 0.02987 0.03184 0.03662 1.01% Castro::construct_new_source() 50 0.02782 0.03073 0.03467 0.96% Castro::finalize_do_advance() 10 0.01379 0.02493 0.03274 0.90% Gravity::interpolate_monopole_grav() 21 0.02727 0.02954 0.0314 0.87% Castro::construct_new_gravity_source() 10 0.02155 0.02466 0.02837 0.78% Amr::writePlotFile() 2 0.023 0.02378 0.02461 0.68% Castro::post_timestep() 10 0.01521 0.01558 0.01595 0.44% VisMF::Write(FabArray) 2 0.008695 0.009924 0.01448 0.40% Castro::Castro() 1 0.009704 0.01105 0.01393 0.38% Castro::apply_source_to_state() 20 0.01052 0.01226 0.013 0.36% FabArray::Saxpy() 20 0.01048 0.01222 0.01296 0.36% FabArray::setDomainBndry() 41 0.00676 0.01061 0.01284 0.35% Castro::check_for_nan() 20 0.01019 0.01104 0.01218 0.34% MultiFab::contains_nan() 20 0.01016 0.01101 0.01216 0.34% Castro::construct_old_source() 50 0.006827 0.009212 0.009855 0.27% Castro::initMFs() 1 0.006215 0.007414 0.00983 0.27% Castro::construct_old_gravity_source() 10 0.00677 0.00914 0.009772 0.27% Castro::computeNewDt() 9 0.009446 0.009451 0.009455 0.26% AmrLevel::AmrLevel(dm) 1 0.005246 0.006144 0.008051 0.22% StateData::define() 4 0.005227 0.006122 0.008025 0.22% Castro::enforce_min_density() 62 0.005549 0.006062 0.006632 0.18% Castro::finalize_advance() 10 0.00289 0.00376 0.004791 0.13% Castro::swap_state_time_levels() 10 0.003158 0.004187 0.004441 0.12% Castro::post_regrid() 1 0.001481 0.001905 0.0028 0.08% Castro::buildMetrics() 1 0.001581 0.001875 0.002494 0.07% Amr::InitAmr() 1 0.0003536 0.0004637 0.0006794 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.285e-05 0.0002492 0.0003614 0.01% DistributionMapping::LeastUsedCPUs() 1 6.752e-06 0.000243 0.0003542 0.01% Castro::enforce_consistent_e() 1 7.751e-05 9.634e-05 0.000141 0.00% FabArrayBase::getCPC() 41 6.274e-05 7.943e-05 8.984e-05 0.00% Amr::writeSmallPlotFile() 1 3.24e-05 5.311e-05 6.984e-05 0.00% FabArrayBase::CPC::define() 2 2.045e-05 2.683e-05 3.368e-05 0.00% Castro::enforce_speed_limit() 62 2.435e-05 2.763e-05 3.151e-05 0.00% Amr::initSubcycle() 1 9.379e-06 1.178e-05 1.69e-05 0.00% Gravity::set_mass_offset() 10 9.577e-06 1.137e-05 1.397e-05 0.00% Gravity::swapTimeLevels() 10 7.036e-06 1.006e-05 1.186e-05 0.00% Castro::create_source_corrector() 10 6.479e-06 8.428e-06 9.838e-06 0.00% Castro::FluxRegCrseInit 10 6.506e-06 7.738e-06 8.62e-06 0.00% Castro::retry_advance_ctu() 10 6.92e-06 7.478e-06 8.299e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.472e-06 2.944e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.116e-06 1.498e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-30-g2ecafcff4013) finalized