Initializing AMReX (24.02-30-g2ecafcff4013)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-30-g2ecafcff4013) initialized Starting run at 06:32:08 UTC on 2024-02-26. Successfully read inputs file ... Castro git describe: 24.02-23-g9a07326d4 AMReX git describe: 24.02-30-g2ecafcff4 Microphysics git describe: 24.02-23-g3df6ba0c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013347108 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352555211 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347637404 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328913262 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32949759 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.326076899 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.360124232 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310135753 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306476535 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30743011 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308421884 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.064092251 seconds Ending run at 06:32:11 UTC on 2024-02-26. Run time = 3.553218243 Run time without initialization = 3.347198862 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.553 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2823 2.3374 2.3931 67.35% Gravity::make_radial_gravity() 21 0.2897 0.3107 0.3265 9.19% Castro::initData() 1 0.05477 0.09148 0.1365 3.84% check_for_negative_density() 10 0.01123 0.07253 0.1292 3.64% Castro::estTimeStep() 21 0.03159 0.07837 0.119 3.35% amrex::Copy() 193 0.06387 0.08065 0.09947 2.80% FabArray::ParallelCopy_finish() 41 0.03762 0.05074 0.09549 2.69% FabArray::setVal() 143 0.05309 0.06758 0.07546 2.12% Amr::writePlotFile() 2 0.06305 0.06613 0.0668 1.88% Castro::reset_internal_energy(Fab) 1008 0.04629 0.0483 0.05049 1.42% Castro::normalize_species() 62 0.0409 0.04208 0.0448 1.26% FabArray::ParallelCopy_nowait() 41 0.03448 0.0406 0.04276 1.20% StateData::FillBoundary(geom) 41 0.02899 0.03158 0.03562 1.00% FillPatchIterator::Initialize 41 0.02676 0.03148 0.03423 0.96% Gravity::interpolate_monopole_grav() 21 0.02761 0.02907 0.02965 0.83% Castro::construct_new_gravity_source() 10 0.02117 0.02346 0.02507 0.71% Castro::computeTemp() 63 0.01885 0.01976 0.02052 0.58% Castro::initialize_do_advance() 10 0.0117 0.01633 0.01762 0.50% MultiFab::contains_nan() 20 0.01001 0.01211 0.01609 0.45% Castro::initialize_advance() 10 0.003792 0.01083 0.01433 0.40% FabArray::Saxpy() 20 0.01067 0.01262 0.01381 0.39% FabArray::setDomainBndry() 41 0.006274 0.009472 0.01208 0.34% VisMF::Write(FabArray) 2 0.00876 0.00932 0.01205 0.34% Castro::construct_old_gravity_source() 10 0.006623 0.009512 0.01022 0.29% Castro::initMFs() 1 0.006206 0.00745 0.009687 0.27% StateData::define() 4 0.00515 0.006087 0.007826 0.22% Castro::enforce_min_density() 62 0.007062 0.007368 0.007751 0.22% Castro::construct_new_source() 50 0.005823 0.006536 0.006811 0.19% main() 1 0.003859 0.004434 0.00514 0.14% Castro::swap_state_time_levels() 10 0.003432 0.00414 0.004328 0.12% Gravity::get_new_grav_vector() 11 0.002907 0.003421 0.003822 0.11% Amr::coarseTimeStep() 10 0.001091 0.00252 0.003214 0.09% Gravity::get_old_grav_vector() 10 0.001497 0.002031 0.002947 0.08% Castro::buildMetrics() 1 0.001447 0.001734 0.002257 0.06% Castro::finalize_do_advance() 10 0.0004908 0.0009949 0.001215 0.03% AmrLevel::FillPatch() 41 0.0006949 0.0008243 0.0009437 0.03% Amr::InitAmr() 1 0.0003492 0.0004639 0.0006817 0.02% Amr::timeStep() 10 0.000143 0.0002102 0.0004054 0.01% DistributionMapping::LeastUsedCPUs() 1 8.109e-06 0.0002512 0.0003707 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002952 0.0003228 0.01% Castro::do_advance_ctu() 10 0.000114 0.0001481 0.00018 0.01% Castro::clean_state() 62 0.0001322 0.0001536 0.000179 0.01% StateDataPhysBCFunct::() 41 9.297e-05 0.000105 0.0001291 0.00% Castro::enforce_consistent_e() 1 7.728e-05 8.894e-05 0.0001232 0.00% FillPatchIterator::FillFromLevel0() 41 9.564e-05 0.0001036 0.0001182 0.00% Castro::do_old_sources() 10 7.214e-05 8.813e-05 0.0001062 0.00% Castro::finalize_advance() 10 7.91e-05 9.195e-05 0.0001049 0.00% FabArray::ParallelCopy() 41 6.595e-05 7.974e-05 9.608e-05 0.00% Castro::construct_old_source() 50 4.352e-05 6.853e-05 8.01e-05 0.00% FillPatchSingleLevel 41 5.821e-05 6.708e-05 7.898e-05 0.00% Castro::Castro() 1 5.167e-05 6.202e-05 7.485e-05 0.00% Castro::do_new_sources() 10 5.294e-05 6.553e-05 7.408e-05 0.00% Castro::construct_old_gravity() 10 3.077e-05 4.144e-05 7.099e-05 0.00% Amr::FinalizeInit() 1 3.545e-06 1.221e-05 6.777e-05 0.00% Amr::writeSmallPlotFile() 1 3.421e-05 4.933e-05 6.628e-05 0.00% Castro::apply_source_to_state() 20 3.817e-05 5.096e-05 6.541e-05 0.00% FabArrayBase::getCPC() 41 3.429e-05 4.804e-05 5.838e-05 0.00% Castro::subcycle_advance_ctu() 10 3.481e-05 4.654e-05 5.678e-05 0.00% Castro::check_for_nan() 20 2.107e-05 2.736e-05 5.434e-05 0.00% Castro::advance() 10 3.858e-05 4.403e-05 4.93e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.997e-05 4.21e-05 0.00% Castro::construct_new_gravity() 10 3.115e-05 3.44e-05 4.139e-05 0.00% FabArrayBase::CPC::define() 2 2.131e-05 2.496e-05 3.289e-05 0.00% Amr::defBaseLevel() 1 1.777e-05 2.246e-05 3.043e-05 0.00% Castro::expand_state() 10 2.014e-05 2.33e-05 2.905e-05 0.00% Amr::initSubcycle() 1 9.806e-06 1.363e-05 2.659e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.472e-05 1.973e-05 2.637e-05 0.00% Castro::post_timestep() 10 1.177e-05 1.586e-05 2.392e-05 0.00% Castro::post_init() 1 1.421e-05 1.51e-05 1.608e-05 0.00% Gravity::swapTimeLevels() 10 8.032e-06 9.673e-06 1.324e-05 0.00% Gravity::set_mass_offset() 10 9.206e-06 1.052e-05 1.265e-05 0.00% Castro::computeNewDt() 9 7.381e-06 8.344e-06 1.115e-05 0.00% Castro::create_source_corrector() 10 7.071e-06 8.355e-06 9.952e-06 0.00% Castro::retry_advance_ctu() 10 6.493e-06 7.657e-06 9.431e-06 0.00% Castro::FluxRegCrseInit 10 5.179e-06 7.539e-06 8.94e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.122e-06 5.402e-06 7.112e-06 0.00% Amr::InitializeInit() 1 1.841e-06 2.688e-06 5.468e-06 0.00% Castro::computeInitialDt() 2 3.248e-06 3.785e-06 4.535e-06 0.00% Castro::post_regrid() 1 2.383e-06 3.1e-06 4.36e-06 0.00% Castro::FluxRegFineAdd() 10 2.018e-06 2.411e-06 3.175e-06 0.00% Amr::init() 1 1.798e-06 2.014e-06 2.218e-06 0.00% Amr::initialInit() 1 1.395e-06 1.692e-06 1.948e-06 0.00% DistributionMapping::Distribute() 1 9.95e-07 1.184e-06 1.426e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.553 100.00% Amr::coarseTimeStep() 10 3.278 3.278 3.278 92.25% Amr::timeStep() 10 3.264 3.265 3.266 91.93% Castro::advance() 10 3.248 3.249 3.249 91.43% Castro::subcycle_advance_ctu() 10 3.17 3.175 3.193 89.86% Castro::do_advance_ctu() 10 3.169 3.174 3.193 89.85% Castro::construct_ctu_hydro_source() 10 2.426 2.431 2.435 68.52% Gravity::make_radial_gravity() 21 0.3054 0.3264 0.3394 9.55% AmrLevel::FillPatch() 41 0.174 0.1974 0.2167 6.10% Castro::construct_old_gravity() 10 0.1836 0.2014 0.2135 6.01% Gravity::get_old_grav_vector() 10 0.1825 0.2007 0.2129 5.99% Gravity::get_new_grav_vector() 11 0.2065 0.208 0.2095 5.90% Amr::init() 1 0.2051 0.2054 0.2055 5.78% FillPatchIterator::Initialize 41 0.1438 0.1643 0.1925 5.42% Amr::initialInit() 1 0.1911 0.1915 0.1918 5.40% Castro::construct_new_gravity() 10 0.182 0.183 0.1839 5.18% Castro::initialize_do_advance() 10 0.1569 0.1643 0.1777 5.00% Amr::InitializeInit() 1 0.07532 0.1127 0.1625 4.57% Amr::defBaseLevel() 1 0.07532 0.1127 0.1625 4.57% FillPatchIterator::FillFromLevel0() 41 0.1086 0.1233 0.1595 4.49% FillPatchSingleLevel 41 0.1085 0.1232 0.1594 4.49% Castro::initData() 1 0.05829 0.09531 0.1409 3.96% FabArray::ParallelCopy() 41 0.07936 0.0915 0.1301 3.66% check_for_negative_density() 10 0.01123 0.07253 0.1292 3.64% Castro::expand_state() 10 0.09623 0.1091 0.121 3.40% Castro::clean_state() 62 0.1138 0.117 0.1203 3.39% Castro::estTimeStep() 21 0.03159 0.07837 0.119 3.35% Amr::FinalizeInit() 1 0.0289 0.07875 0.1162 3.27% Castro::do_old_sources() 10 0.0901 0.09763 0.103 2.90% amrex::Copy() 193 0.06387 0.08065 0.09947 2.80% FabArray::ParallelCopy_finish() 41 0.03762 0.05074 0.09549 2.69% Castro::computeInitialDt() 2 0.002508 0.05248 0.08996 2.53% Amr::writePlotFile() 2 0.0777 0.07809 0.07836 2.21% Castro::initialize_advance() 10 0.05174 0.07056 0.0757 2.13% FabArray::setVal() 143 0.05309 0.06758 0.07546 2.12% Castro::computeTemp() 63 0.06587 0.06835 0.07076 1.99% Castro::do_new_sources() 10 0.05967 0.063 0.0679 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04658 0.04859 0.05081 1.43% Castro::reset_internal_energy(Fab) 1008 0.04629 0.0483 0.05049 1.42% Castro::normalize_species() 62 0.0409 0.04208 0.0448 1.26% FabArray::ParallelCopy_nowait() 41 0.03456 0.04068 0.04282 1.21% StateDataPhysBCFunct::() 41 0.0291 0.03168 0.03571 1.01% StateData::FillBoundary(geom) 41 0.02899 0.03158 0.03562 1.00% Castro::construct_new_source() 50 0.027 0.02999 0.03171 0.89% Gravity::interpolate_monopole_grav() 21 0.02761 0.02907 0.02965 0.83% Castro::post_init() 1 0.02574 0.02592 0.02607 0.73% Castro::construct_new_gravity_source() 10 0.02117 0.02346 0.02507 0.71% Castro::finalize_do_advance() 10 0.0128 0.0177 0.02139 0.60% Castro::post_timestep() 10 0.01561 0.01624 0.01772 0.50% Castro::check_for_nan() 20 0.01003 0.01213 0.01615 0.45% MultiFab::contains_nan() 20 0.01001 0.01211 0.01609 0.45% Castro::apply_source_to_state() 20 0.01073 0.01267 0.01386 0.39% Castro::Castro() 1 0.009459 0.01102 0.01385 0.39% FabArray::Saxpy() 20 0.01067 0.01262 0.01381 0.39% FabArray::setDomainBndry() 41 0.006274 0.009472 0.01208 0.34% VisMF::Write(FabArray) 2 0.00876 0.00932 0.01205 0.34% Castro::construct_old_source() 50 0.006666 0.009581 0.0103 0.29% Castro::construct_old_gravity_source() 10 0.006623 0.009512 0.01022 0.29% Castro::initMFs() 1 0.006206 0.00745 0.009687 0.27% Castro::computeNewDt() 9 0.009195 0.009203 0.009211 0.26% AmrLevel::AmrLevel(dm) 1 0.005165 0.006107 0.007847 0.22% StateData::define() 4 0.00515 0.006087 0.007826 0.22% Castro::enforce_min_density() 62 0.007062 0.007368 0.007751 0.22% Castro::swap_state_time_levels() 10 0.003432 0.00414 0.004328 0.12% Castro::finalize_advance() 10 0.003244 0.003462 0.003676 0.10% Castro::buildMetrics() 1 0.001563 0.001884 0.002473 0.07% Castro::post_regrid() 1 0.00153 0.00162 0.00182 0.05% Amr::InitAmr() 1 0.0003596 0.0004776 0.0006998 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.36e-05 0.0002578 0.0003787 0.01% DistributionMapping::LeastUsedCPUs() 1 8.109e-06 0.0002512 0.0003707 0.01% Castro::enforce_consistent_e() 1 7.728e-05 8.894e-05 0.0001232 0.00% FabArrayBase::getCPC() 41 5.57e-05 7.3e-05 8.553e-05 0.00% Amr::writeSmallPlotFile() 1 3.421e-05 4.933e-05 6.628e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.997e-05 4.21e-05 0.00% FabArrayBase::CPC::define() 2 2.131e-05 2.496e-05 3.289e-05 0.00% Amr::initSubcycle() 1 9.806e-06 1.363e-05 2.659e-05 0.00% Gravity::swapTimeLevels() 10 8.032e-06 9.673e-06 1.324e-05 0.00% Gravity::set_mass_offset() 10 9.206e-06 1.052e-05 1.265e-05 0.00% Castro::create_source_corrector() 10 7.071e-06 8.355e-06 9.952e-06 0.00% Castro::retry_advance_ctu() 10 6.493e-06 7.657e-06 9.431e-06 0.00% Castro::FluxRegCrseInit 10 5.179e-06 7.539e-06 8.94e-06 0.00% Castro::FluxRegFineAdd() 10 2.018e-06 2.411e-06 3.175e-06 0.00% DistributionMapping::Distribute() 1 9.95e-07 1.184e-06 1.426e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-30-g2ecafcff4013) finalized