Initializing AMReX (24.02-30-g2ecafcff4013)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-30-g2ecafcff4013) initialized Starting run at 06:32:25 UTC on 2024-02-27. Successfully read inputs file ... Castro git describe: 24.02-23-g9a07326d4 AMReX git describe: 24.02-30-g2ecafcff4 Microphysics git describe: 24.02-27-gf336cab4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012582334 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351344378 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338729489 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33884648 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324366614 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.32725823 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.370881711 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312511378 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30655511 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308788724 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306557726 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007415741 seconds Ending run at 06:32:28 UTC on 2024-02-27. Run time = 3.527177211 Run time without initialization = 3.298798009 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.527 ... 3.527 ... 3.527 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2999 2.3499 2.3980 67.98% Gravity::make_radial_gravity() 21 0.2901 0.2989 0.3122 8.85% Castro::initData() 1 0.05034 0.1036 0.1605 4.55% Castro::estTimeStep() 21 0.02233 0.08738 0.1448 4.11% check_for_negative_density() 10 0.0138 0.0676 0.1198 3.40% FabArray::ParallelCopy_finish() 41 0.04233 0.06875 0.1175 3.33% amrex::Copy() 193 0.06441 0.07704 0.08806 2.50% FabArray::setVal() 143 0.0529 0.06949 0.08651 2.45% Castro::reset_internal_energy(Fab) 1008 0.04615 0.04757 0.04962 1.41% Castro::normalize_species() 62 0.04129 0.04183 0.04372 1.24% FabArray::ParallelCopy_nowait() 41 0.03603 0.04099 0.04338 1.23% FillPatchIterator::Initialize 41 0.02591 0.03173 0.03836 1.09% StateData::FillBoundary(geom) 41 0.02812 0.03134 0.03517 1.00% Gravity::interpolate_monopole_grav() 21 0.02747 0.02894 0.02955 0.84% Castro::initialize_do_advance() 10 0.01095 0.01773 0.02615 0.74% Castro::construct_new_gravity_source() 10 0.02024 0.02302 0.02481 0.70% Castro::computeTemp() 63 0.01822 0.01976 0.02092 0.59% Castro::initialize_advance() 10 0.003851 0.01055 0.0143 0.41% FabArray::Saxpy() 20 0.01091 0.01272 0.01376 0.39% FabArray::setDomainBndry() 41 0.007095 0.009319 0.01184 0.34% MultiFab::contains_nan() 20 0.009775 0.01068 0.01179 0.33% VisMF::Write(FabArray) 2 0.008825 0.009322 0.01157 0.33% Castro::construct_old_gravity_source() 10 0.006661 0.0094 0.01034 0.29% Castro::initMFs() 1 0.006297 0.007994 0.009582 0.27% Amr::writePlotFile() 2 0.005889 0.00838 0.009378 0.27% Castro::enforce_min_density() 62 0.006941 0.007362 0.0079 0.22% StateData::define() 4 0.005197 0.006483 0.007765 0.22% Castro::construct_new_source() 50 0.005646 0.006361 0.006608 0.19% main() 1 0.00395 0.004412 0.004717 0.13% Castro::swap_state_time_levels() 10 0.003085 0.004103 0.004411 0.13% Gravity::get_new_grav_vector() 11 0.00285 0.003462 0.003838 0.11% Amr::coarseTimeStep() 10 0.001148 0.001854 0.002824 0.08% Gravity::get_old_grav_vector() 10 0.001495 0.001926 0.002462 0.07% Castro::buildMetrics() 1 0.001479 0.001871 0.002261 0.06% Castro::finalize_do_advance() 10 0.0005678 0.001061 0.001318 0.04% AmrLevel::FillPatch() 41 0.0007384 0.0009669 0.001222 0.03% Amr::InitAmr() 1 0.0003563 0.000538 0.0006959 0.02% Amr::timeStep() 10 0.0001898 0.0002475 0.0004426 0.01% DistributionMapping::LeastUsedCPUs() 1 6.548e-06 0.0001818 0.0003824 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002779 0.0002896 0.0003044 0.01% Castro::do_advance_ctu() 10 0.0001307 0.0001537 0.0001834 0.01% Castro::clean_state() 62 0.0001438 0.0001505 0.0001589 0.00% Castro::enforce_consistent_e() 1 8.3e-05 0.0001009 0.0001368 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001035 0.0001157 0.0001345 0.00% Castro::finalize_advance() 10 8.561e-05 0.0001082 0.000126 0.00% StateDataPhysBCFunct::() 41 9.316e-05 0.0001027 0.0001182 0.00% Castro::do_old_sources() 10 7.006e-05 9.3e-05 0.000106 0.00% Castro::subcycle_advance_ctu() 10 3.914e-05 6.591e-05 0.0001051 0.00% FabArray::ParallelCopy() 41 7.907e-05 8.652e-05 9.625e-05 0.00% FillPatchSingleLevel 41 6.439e-05 7.435e-05 9.526e-05 0.00% Castro::Castro() 1 5.59e-05 7.389e-05 8.918e-05 0.00% Castro::do_new_sources() 10 6.126e-05 6.854e-05 8.853e-05 0.00% Castro::advance() 10 3.678e-05 5.68e-05 8.844e-05 0.00% Castro::construct_old_source() 50 4.646e-05 7.048e-05 8.418e-05 0.00% FabArrayBase::getCPC() 41 4.24e-05 5.765e-05 7.806e-05 0.00% Amr::writeSmallPlotFile() 1 3.282e-05 5.892e-05 7.668e-05 0.00% Amr::FinalizeInit() 1 3.265e-06 1.309e-05 7.127e-05 0.00% Castro::construct_old_gravity() 10 3.377e-05 4.942e-05 6.802e-05 0.00% Castro::apply_source_to_state() 20 4.348e-05 5.249e-05 5.884e-05 0.00% Castro::enforce_speed_limit() 62 2.576e-05 3.217e-05 4.329e-05 0.00% Castro::construct_new_gravity() 10 3.055e-05 3.652e-05 4.263e-05 0.00% Castro::expand_state() 10 2.211e-05 2.986e-05 4.002e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.79e-05 2.47e-05 3.316e-05 0.00% FabArrayBase::CPC::define() 2 2.18e-05 2.564e-05 3.032e-05 0.00% Gravity::set_mass_offset() 10 7.854e-06 1.348e-05 2.647e-05 0.00% Castro::check_for_nan() 20 2.084e-05 2.305e-05 2.458e-05 0.00% Amr::defBaseLevel() 1 1.631e-05 1.979e-05 2.328e-05 0.00% Castro::post_init() 1 1.268e-05 1.513e-05 1.899e-05 0.00% Castro::post_timestep() 10 1.213e-05 1.494e-05 1.893e-05 0.00% Amr::initSubcycle() 1 9.962e-06 1.427e-05 1.864e-05 0.00% Gravity::swapTimeLevels() 10 6.998e-06 1.036e-05 1.452e-05 0.00% Castro::computeNewDt() 9 7.502e-06 8.817e-06 1.082e-05 0.00% Castro::create_source_corrector() 10 7.736e-06 8.649e-06 9.561e-06 0.00% Castro::FluxRegCrseInit 10 6.563e-06 7.795e-06 9.543e-06 0.00% Castro::retry_advance_ctu() 10 7.385e-06 7.979e-06 8.768e-06 0.00% Castro::post_regrid() 1 1.363e-06 4.325e-06 8.282e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.871e-06 4.675e-06 6.607e-06 0.00% Amr::InitializeInit() 1 1.961e-06 2.588e-06 4.983e-06 0.00% Castro::computeInitialDt() 2 3.336e-06 3.931e-06 4.32e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.444e-06 3.147e-06 0.00% Amr::init() 1 1.931e-06 2.145e-06 2.563e-06 0.00% Amr::initialInit() 1 1.301e-06 1.706e-06 2.068e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.215e-06 1.618e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.527 3.527 3.527 100.00% Amr::coarseTimeStep() 10 3.287 3.287 3.287 93.18% Amr::timeStep() 10 3.274 3.275 3.275 92.86% Castro::advance() 10 3.258 3.258 3.259 92.39% Castro::subcycle_advance_ctu() 10 3.167 3.183 3.205 90.86% Castro::do_advance_ctu() 10 3.167 3.183 3.205 90.86% Castro::construct_ctu_hydro_source() 10 2.433 2.438 2.441 69.19% Gravity::make_radial_gravity() 21 0.3063 0.3147 0.3252 9.22% AmrLevel::FillPatch() 41 0.1768 0.2128 0.2411 6.84% Amr::init() 1 0.2275 0.2277 0.2279 6.46% FillPatchIterator::Initialize 41 0.1481 0.1826 0.217 6.15% Amr::initialInit() 1 0.2144 0.2148 0.215 6.10% Gravity::get_new_grav_vector() 11 0.2065 0.2071 0.2077 5.89% Castro::construct_old_gravity() 10 0.1847 0.1903 0.1998 5.66% Gravity::get_old_grav_vector() 10 0.1841 0.1895 0.1992 5.65% Castro::initialize_do_advance() 10 0.1587 0.1804 0.1929 5.47% Amr::InitializeInit() 1 0.06974 0.1265 0.1862 5.28% Amr::defBaseLevel() 1 0.06974 0.1264 0.1862 5.28% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1415 0.1833 5.20% FillPatchSingleLevel 41 0.1132 0.1414 0.1832 5.20% Castro::construct_new_gravity() 10 0.1819 0.1823 0.1825 5.18% Castro::initData() 1 0.05404 0.1077 0.1642 4.66% FabArray::ParallelCopy() 41 0.08435 0.1099 0.1537 4.36% Castro::expand_state() 10 0.1031 0.1261 0.1467 4.16% Amr::FinalizeInit() 1 0.02862 0.08833 0.1452 4.12% Castro::estTimeStep() 21 0.02233 0.08738 0.1448 4.11% check_for_negative_density() 10 0.0138 0.0676 0.1198 3.40% Castro::computeInitialDt() 2 0.00219 0.06214 0.1189 3.37% Castro::clean_state() 62 0.113 0.1159 0.1187 3.36% FabArray::ParallelCopy_finish() 41 0.04233 0.06875 0.1175 3.33% Castro::do_old_sources() 10 0.09122 0.09619 0.1009 2.86% Castro::initialize_advance() 10 0.04966 0.07169 0.0882 2.50% amrex::Copy() 193 0.06441 0.07704 0.08806 2.50% FabArray::setVal() 143 0.0529 0.06949 0.08651 2.45% Castro::computeTemp() 63 0.06555 0.06762 0.07044 2.00% Castro::do_new_sources() 10 0.05842 0.06263 0.06699 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04644 0.04786 0.0499 1.41% Castro::reset_internal_energy(Fab) 1008 0.04615 0.04757 0.04962 1.41% Castro::normalize_species() 62 0.04129 0.04183 0.04372 1.24% FabArray::ParallelCopy_nowait() 41 0.0361 0.04107 0.04348 1.23% StateDataPhysBCFunct::() 41 0.02822 0.03144 0.03528 1.00% StateData::FillBoundary(geom) 41 0.02812 0.03134 0.03517 1.00% Castro::construct_new_source() 50 0.02589 0.02939 0.03125 0.89% Gravity::interpolate_monopole_grav() 21 0.02747 0.02894 0.02955 0.84% Castro::post_init() 1 0.02509 0.0257 0.02607 0.74% Castro::construct_new_gravity_source() 10 0.02024 0.02302 0.02481 0.70% Castro::finalize_do_advance() 10 0.01236 0.0172 0.02098 0.59% Amr::writePlotFile() 2 0.02016 0.0204 0.02068 0.59% Castro::post_timestep() 10 0.01482 0.01587 0.0164 0.46% Castro::Castro() 1 0.009664 0.012 0.01416 0.40% Castro::apply_source_to_state() 20 0.01095 0.01277 0.01382 0.39% FabArray::Saxpy() 20 0.01091 0.01272 0.01376 0.39% FabArray::setDomainBndry() 41 0.007095 0.009319 0.01184 0.34% Castro::check_for_nan() 20 0.009796 0.0107 0.01182 0.34% MultiFab::contains_nan() 20 0.009775 0.01068 0.01179 0.33% VisMF::Write(FabArray) 2 0.008825 0.009322 0.01157 0.33% Castro::construct_old_source() 50 0.006707 0.009471 0.01042 0.30% Castro::construct_old_gravity_source() 10 0.006661 0.0094 0.01034 0.29% Castro::initMFs() 1 0.006297 0.007994 0.009582 0.27% Castro::computeNewDt() 9 0.009105 0.009113 0.009119 0.26% Castro::enforce_min_density() 62 0.006941 0.007362 0.0079 0.22% AmrLevel::AmrLevel(dm) 1 0.005216 0.006507 0.007795 0.22% StateData::define() 4 0.005197 0.006483 0.007765 0.22% Castro::swap_state_time_levels() 10 0.003085 0.004103 0.004411 0.13% Castro::finalize_advance() 10 0.003348 0.003432 0.003531 0.10% Castro::buildMetrics() 1 0.001606 0.002033 0.002461 0.07% Castro::post_regrid() 1 0.001484 0.001644 0.001973 0.06% Amr::InitAmr() 1 0.0003674 0.0005523 0.0007133 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.214e-05 0.0001877 0.0003901 0.01% DistributionMapping::LeastUsedCPUs() 1 6.548e-06 0.0001818 0.0003824 0.01% Castro::enforce_consistent_e() 1 8.3e-05 0.0001009 0.0001368 0.00% FabArrayBase::getCPC() 41 6.753e-05 8.329e-05 0.0001084 0.00% Amr::writeSmallPlotFile() 1 3.282e-05 5.892e-05 7.668e-05 0.00% Castro::enforce_speed_limit() 62 2.576e-05 3.217e-05 4.329e-05 0.00% FabArrayBase::CPC::define() 2 2.18e-05 2.564e-05 3.032e-05 0.00% Gravity::set_mass_offset() 10 7.854e-06 1.348e-05 2.647e-05 0.00% Amr::initSubcycle() 1 9.962e-06 1.427e-05 1.864e-05 0.00% Gravity::swapTimeLevels() 10 6.998e-06 1.036e-05 1.452e-05 0.00% Castro::create_source_corrector() 10 7.736e-06 8.649e-06 9.561e-06 0.00% Castro::FluxRegCrseInit 10 6.563e-06 7.795e-06 9.543e-06 0.00% Castro::retry_advance_ctu() 10 7.385e-06 7.979e-06 8.768e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.444e-06 3.147e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.215e-06 1.618e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 40 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-30-g2ecafcff4013) finalized