Initializing AMReX (24.02-30-g2ecafcff4013)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-30-g2ecafcff4013) initialized Starting run at 06:32:44 UTC on 2024-02-28. Successfully read inputs file ... Castro git describe: 24.02-23-g9a07326d4 AMReX git describe: 24.02-30-g2ecafcff4 Microphysics git describe: 24.02-27-gf336cab4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013217659 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354009428 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33377138 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346310047 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327013807 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336694015 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.363199584 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315436471 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307664274 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308483687 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310095111 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007433534 seconds Ending run at 06:32:48 UTC on 2024-02-28. Run time = 3.508908224 Run time without initialization = 3.315631829 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.508 ... 3.509 ... 3.509 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3002 2.3572 2.4002 68.40% Gravity::make_radial_gravity() 21 0.2876 0.2982 0.3112 8.87% check_for_negative_density() 10 0.02997 0.07867 0.1374 3.91% Castro::initData() 1 0.04896 0.08731 0.1283 3.66% Castro::estTimeStep() 21 0.02621 0.07283 0.1077 3.07% amrex::Copy() 193 0.06455 0.08052 0.09581 2.73% FabArray::ParallelCopy_finish() 41 0.03645 0.05816 0.09297 2.65% FabArray::setVal() 143 0.06245 0.07106 0.07926 2.26% Castro::reset_internal_energy(Fab) 1008 0.04596 0.04793 0.05047 1.44% Castro::normalize_species() 62 0.04099 0.04187 0.0426 1.21% FabArray::ParallelCopy_nowait() 41 0.03399 0.04022 0.04251 1.21% StateData::FillBoundary(geom) 41 0.02888 0.0316 0.03612 1.03% FillPatchIterator::Initialize 41 0.02709 0.03181 0.03497 1.00% Gravity::interpolate_monopole_grav() 21 0.02726 0.02929 0.03082 0.88% Castro::construct_new_gravity_source() 10 0.02177 0.02358 0.02692 0.77% Castro::computeTemp() 63 0.01811 0.01982 0.0207 0.59% Castro::initialize_do_advance() 10 0.01178 0.01697 0.01816 0.52% Castro::initialize_advance() 10 0.008996 0.01217 0.01565 0.45% FabArray::Saxpy() 20 0.01009 0.01241 0.01378 0.39% FabArray::setDomainBndry() 41 0.006902 0.009859 0.01271 0.36% VisMF::Write(FabArray) 2 0.008786 0.009362 0.01175 0.33% MultiFab::contains_nan() 20 0.00956 0.01067 0.01158 0.33% Castro::construct_old_gravity_source() 10 0.006228 0.009075 0.009891 0.28% Amr::writePlotFile() 2 0.006255 0.008369 0.009096 0.26% Castro::enforce_min_density() 62 0.007097 0.00741 0.007969 0.23% Castro::initMFs() 1 0.006206 0.006896 0.007904 0.23% Castro::construct_new_source() 50 0.005896 0.006336 0.006556 0.19% StateData::define() 4 0.005205 0.005608 0.005915 0.17% main() 1 0.003573 0.004346 0.004801 0.14% Castro::swap_state_time_levels() 10 0.003142 0.004125 0.004354 0.12% Gravity::get_new_grav_vector() 11 0.002768 0.003408 0.003838 0.11% Amr::coarseTimeStep() 10 0.002248 0.003118 0.003763 0.11% Gravity::get_old_grav_vector() 10 0.001515 0.001905 0.002365 0.07% Castro::buildMetrics() 1 0.001459 0.001592 0.001682 0.05% Castro::finalize_do_advance() 10 0.0005277 0.001064 0.001363 0.04% AmrLevel::FillPatch() 41 0.000803 0.0008802 0.001157 0.03% Amr::InitAmr() 1 0.0003447 0.00039 0.0005885 0.02% Amr::timeStep() 10 0.0001813 0.0002249 0.0004205 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002749 0.0003045 0.0003291 0.01% DistributionMapping::LeastUsedCPUs() 1 7.917e-06 0.0002111 0.0002514 0.01% Castro::do_advance_ctu() 10 0.0001256 0.0001558 0.0001858 0.01% Castro::clean_state() 62 0.0001352 0.0001499 0.0001691 0.00% FillPatchIterator::FillFromLevel0() 41 9.693e-05 0.0001122 0.0001439 0.00% StateDataPhysBCFunct::() 41 0.0001025 0.0001147 0.0001367 0.00% Castro::finalize_advance() 10 8.97e-05 0.0001013 0.0001176 0.00% Castro::enforce_consistent_e() 1 7.94e-05 9.061e-05 0.0001147 0.00% Castro::do_old_sources() 10 7.639e-05 9.215e-05 0.0001091 0.00% Castro::do_new_sources() 10 6.227e-05 7.303e-05 9.363e-05 0.00% FabArray::ParallelCopy() 41 7.252e-05 8.082e-05 8.9e-05 0.00% Castro::construct_old_source() 50 5.439e-05 7.103e-05 8.741e-05 0.00% FillPatchSingleLevel 41 6.616e-05 7.47e-05 8.665e-05 0.00% Castro::advance() 10 3.88e-05 5.095e-05 7.206e-05 0.00% Amr::FinalizeInit() 1 4.279e-06 1.358e-05 7.1e-05 0.00% Castro::Castro() 1 6.064e-05 6.377e-05 6.957e-05 0.00% Castro::subcycle_advance_ctu() 10 4.05e-05 5.322e-05 6.939e-05 0.00% FabArrayBase::getCPC() 41 4.486e-05 5.461e-05 6.402e-05 0.00% Amr::writeSmallPlotFile() 1 3.227e-05 5.034e-05 6.342e-05 0.00% Castro::apply_source_to_state() 20 4.253e-05 4.875e-05 5.719e-05 0.00% Castro::construct_old_gravity() 10 3.345e-05 4.243e-05 5.447e-05 0.00% Castro::construct_new_gravity() 10 3.064e-05 3.701e-05 4.462e-05 0.00% FabArrayBase::CPC::define() 2 2.252e-05 2.626e-05 3.623e-05 0.00% Castro::enforce_speed_limit() 62 2.671e-05 2.986e-05 3.425e-05 0.00% Castro::expand_state() 10 2.24e-05 2.591e-05 2.98e-05 0.00% Castro::check_for_nan() 20 2.216e-05 2.347e-05 2.601e-05 0.00% Amr::defBaseLevel() 1 1.54e-05 2.035e-05 2.542e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.938e-05 2.15e-05 2.492e-05 0.00% Castro::post_timestep() 10 1.266e-05 1.619e-05 2.416e-05 0.00% Gravity::swapTimeLevels() 10 8.543e-06 1.133e-05 1.836e-05 0.00% Castro::post_init() 1 1.354e-05 1.589e-05 1.834e-05 0.00% Gravity::set_mass_offset() 10 8.731e-06 1.233e-05 1.808e-05 0.00% Castro::retry_advance_ctu() 10 7.269e-06 8.832e-06 1.413e-05 0.00% Amr::initSubcycle() 1 9.733e-06 1.082e-05 1.204e-05 0.00% Castro::create_source_corrector() 10 7.648e-06 9.592e-06 1.201e-05 0.00% Castro::computeNewDt() 9 7.492e-06 8.809e-06 1.026e-05 0.00% Castro::FluxRegCrseInit 10 5.936e-06 7.55e-06 9.496e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.342e-06 5.683e-06 7.236e-06 0.00% Amr::InitializeInit() 1 1.879e-06 3.348e-06 5.737e-06 0.00% Castro::computeInitialDt() 2 3.36e-06 3.904e-06 4.441e-06 0.00% Castro::post_regrid() 1 1.636e-06 3.17e-06 3.885e-06 0.00% Castro::FluxRegFineAdd() 10 1.916e-06 2.371e-06 2.862e-06 0.00% Amr::init() 1 1.749e-06 2.159e-06 2.726e-06 0.00% Amr::initialInit() 1 1.201e-06 1.565e-06 2.041e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.066e-06 1.099e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.508 3.509 3.509 100.00% Amr::coarseTimeStep() 10 3.303 3.303 3.303 94.14% Amr::timeStep() 10 3.289 3.289 3.29 93.77% Castro::advance() 10 3.273 3.273 3.273 93.29% Castro::subcycle_advance_ctu() 10 3.19 3.195 3.203 91.29% Castro::do_advance_ctu() 10 3.19 3.195 3.203 91.29% Castro::construct_ctu_hydro_source() 10 2.451 2.457 2.461 70.14% Gravity::make_radial_gravity() 21 0.3039 0.3146 0.3247 9.25% AmrLevel::FillPatch() 41 0.1786 0.2026 0.2172 6.19% Gravity::get_new_grav_vector() 11 0.2065 0.209 0.2106 6.00% Castro::construct_old_gravity() 10 0.1846 0.1919 0.2006 5.72% Gravity::get_old_grav_vector() 10 0.184 0.1913 0.1999 5.70% FillPatchIterator::Initialize 41 0.1491 0.1721 0.1934 5.51% Amr::init() 1 0.1925 0.1927 0.1928 5.49% Castro::construct_new_gravity() 10 0.1811 0.1826 0.1836 5.23% Amr::initialInit() 1 0.1792 0.1797 0.18 5.13% Castro::initialize_do_advance() 10 0.1536 0.1628 0.1695 4.83% FillPatchIterator::FillFromLevel0() 41 0.1145 0.1304 0.1577 4.49% FillPatchSingleLevel 41 0.1145 0.1303 0.1576 4.49% Amr::InitializeInit() 1 0.07007 0.1078 0.1495 4.26% Amr::defBaseLevel() 1 0.07007 0.1078 0.1495 4.26% check_for_negative_density() 10 0.02997 0.07867 0.1374 3.91% Castro::initData() 1 0.05264 0.09123 0.1321 3.77% FabArray::ParallelCopy() 41 0.07911 0.09855 0.1271 3.62% Castro::clean_state() 62 0.1135 0.1165 0.1211 3.45% Castro::expand_state() 10 0.09906 0.1086 0.1146 3.27% Amr::FinalizeInit() 1 0.03009 0.07194 0.1091 3.11% Castro::estTimeStep() 21 0.02621 0.07283 0.1077 3.07% Castro::do_old_sources() 10 0.09076 0.09934 0.1061 3.02% amrex::Copy() 193 0.06455 0.08052 0.09581 2.73% FabArray::ParallelCopy_finish() 41 0.03645 0.05816 0.09297 2.65% Castro::computeInitialDt() 2 0.002335 0.04409 0.08158 2.32% Castro::initialize_advance() 10 0.06579 0.0745 0.07946 2.26% FabArray::setVal() 143 0.06245 0.07106 0.07926 2.26% Castro::computeTemp() 63 0.0644 0.06805 0.0715 2.04% Castro::do_new_sources() 10 0.05959 0.06315 0.07005 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04629 0.04824 0.0508 1.45% Castro::reset_internal_energy(Fab) 1008 0.04596 0.04793 0.05047 1.44% Castro::normalize_species() 62 0.04099 0.04187 0.0426 1.21% FabArray::ParallelCopy_nowait() 41 0.03408 0.0403 0.04258 1.21% StateDataPhysBCFunct::() 41 0.029 0.03171 0.03623 1.03% StateData::FillBoundary(geom) 41 0.02888 0.0316 0.03612 1.03% Castro::construct_new_source() 50 0.02767 0.02992 0.03347 0.95% Gravity::interpolate_monopole_grav() 21 0.02726 0.02929 0.03082 0.88% Castro::post_init() 1 0.02711 0.02753 0.0279 0.79% Castro::construct_new_gravity_source() 10 0.02177 0.02358 0.02692 0.77% Castro::finalize_do_advance() 10 0.01392 0.02012 0.02457 0.70% Amr::writePlotFile() 2 0.02024 0.02054 0.02088 0.60% Castro::post_timestep() 10 0.01551 0.01601 0.01684 0.48% Castro::apply_source_to_state() 20 0.01015 0.01246 0.01383 0.39% FabArray::Saxpy() 20 0.01009 0.01241 0.01378 0.39% FabArray::setDomainBndry() 41 0.006902 0.009859 0.01271 0.36% VisMF::Write(FabArray) 2 0.008786 0.009362 0.01175 0.33% Castro::Castro() 1 0.009544 0.01066 0.0117 0.33% Castro::check_for_nan() 20 0.009583 0.01069 0.0116 0.33% MultiFab::contains_nan() 20 0.00956 0.01067 0.01158 0.33% Castro::construct_old_source() 50 0.006282 0.009146 0.009966 0.28% Castro::construct_old_gravity_source() 10 0.006228 0.009075 0.009891 0.28% Castro::computeNewDt() 9 0.009693 0.009701 0.009706 0.28% Castro::enforce_min_density() 62 0.007097 0.00741 0.007969 0.23% Castro::initMFs() 1 0.006206 0.006896 0.007904 0.23% AmrLevel::AmrLevel(dm) 1 0.005228 0.005629 0.005937 0.17% StateData::define() 4 0.005205 0.005608 0.005915 0.17% Castro::swap_state_time_levels() 10 0.003142 0.004125 0.004354 0.12% Castro::finalize_advance() 10 0.003161 0.003346 0.003563 0.10% Castro::buildMetrics() 1 0.001569 0.001724 0.001829 0.05% Castro::post_regrid() 1 0.001562 0.00162 0.001657 0.05% Amr::InitAmr() 1 0.0003555 0.0004009 0.0006005 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.337e-05 0.0002179 0.0002593 0.01% DistributionMapping::LeastUsedCPUs() 1 7.917e-06 0.0002111 0.0002514 0.01% Castro::enforce_consistent_e() 1 7.94e-05 9.061e-05 0.0001147 0.00% FabArrayBase::getCPC() 41 6.951e-05 8.087e-05 9.343e-05 0.00% Amr::writeSmallPlotFile() 1 3.227e-05 5.034e-05 6.342e-05 0.00% FabArrayBase::CPC::define() 2 2.252e-05 2.626e-05 3.623e-05 0.00% Castro::enforce_speed_limit() 62 2.671e-05 2.986e-05 3.425e-05 0.00% Gravity::swapTimeLevels() 10 8.543e-06 1.133e-05 1.836e-05 0.00% Gravity::set_mass_offset() 10 8.731e-06 1.233e-05 1.808e-05 0.00% Castro::retry_advance_ctu() 10 7.269e-06 8.832e-06 1.413e-05 0.00% Amr::initSubcycle() 1 9.733e-06 1.082e-05 1.204e-05 0.00% Castro::create_source_corrector() 10 7.648e-06 9.592e-06 1.201e-05 0.00% Castro::FluxRegCrseInit 10 5.936e-06 7.55e-06 9.496e-06 0.00% Castro::FluxRegFineAdd() 10 1.916e-06 2.371e-06 2.862e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.066e-06 1.099e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-30-g2ecafcff4013) finalized