Initializing AMReX (24.02-30-g2ecafcff4013)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-30-g2ecafcff4013) initialized Starting run at 06:33:49 UTC on 2024-03-01. Successfully read inputs file ... Castro git describe: 24.02-26-g582f93d7e AMReX git describe: 24.02-30-g2ecafcff4 Microphysics git describe: 24.02-31-ge587300c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012878849 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35347253 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366910032 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335261864 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334494559 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359375737 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343708525 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314601389 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312726231 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310022099 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310455867 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.044601482 seconds Ending run at 06:33:52 UTC on 2024-03-01. Run time = 3.613124151 Run time without initialization = 3.391189152 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.612 ... 3.613 ... 3.613 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3114 2.3638 2.4677 68.30% Gravity::make_radial_gravity() 21 0.2854 0.2967 0.3161 8.75% check_for_negative_density() 10 0.006525 0.1131 0.1696 4.70% Castro::initData() 1 0.04704 0.1012 0.1564 4.33% Castro::estTimeStep() 21 0.03617 0.09044 0.155 4.29% FabArray::setVal() 143 0.06416 0.07298 0.08514 2.36% amrex::Copy() 193 0.06374 0.07661 0.08498 2.35% FabArray::ParallelCopy_finish() 41 0.03581 0.05238 0.07468 2.07% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04792 0.04986 1.38% Amr::writePlotFile() 2 0.04331 0.04563 0.04752 1.32% Castro::normalize_species() 62 0.04127 0.04215 0.04336 1.20% FabArray::ParallelCopy_nowait() 41 0.03453 0.04031 0.04239 1.17% FillPatchIterator::Initialize 41 0.02733 0.03163 0.03424 0.95% StateData::FillBoundary(geom) 41 0.03013 0.0321 0.03348 0.93% Gravity::interpolate_monopole_grav() 21 0.02783 0.02928 0.03001 0.83% Castro::construct_new_gravity_source() 10 0.02158 0.02453 0.02817 0.78% Castro::initialize_do_advance() 10 0.01159 0.01739 0.02121 0.59% Castro::computeTemp() 63 0.01766 0.01962 0.02071 0.57% Castro::initialize_advance() 10 0.008509 0.01161 0.015 0.42% FabArray::Saxpy() 20 0.01052 0.01275 0.01366 0.38% MultiFab::contains_nan() 20 0.01073 0.01157 0.01268 0.35% VisMF::Write(FabArray) 2 0.008185 0.009195 0.01161 0.32% FabArray::setDomainBndry() 41 0.007259 0.009507 0.01152 0.32% Castro::construct_old_gravity_source() 10 0.00683 0.009422 0.01004 0.28% Castro::initMFs() 1 0.006316 0.008232 0.009755 0.27% StateData::define() 4 0.005267 0.006779 0.007986 0.22% Castro::enforce_min_density() 62 0.005873 0.006163 0.006727 0.19% Castro::construct_new_source() 50 0.005566 0.00632 0.006703 0.19% Gravity::get_new_grav_vector() 11 0.002809 0.003697 0.005627 0.16% main() 1 0.003851 0.004438 0.004823 0.13% Castro::swap_state_time_levels() 10 0.003144 0.004099 0.004434 0.12% Amr::coarseTimeStep() 10 0.001361 0.002298 0.003367 0.09% Castro::buildMetrics() 1 0.001486 0.001945 0.002293 0.06% Gravity::get_old_grav_vector() 10 0.001438 0.001932 0.002247 0.06% Castro::finalize_do_advance() 10 0.0004857 0.001168 0.001529 0.04% AmrLevel::FillPatch() 41 0.0008018 0.0009562 0.001051 0.03% Amr::InitAmr() 1 0.0003657 0.000529 0.0006654 0.02% DistributionMapping::LeastUsedCPUs() 1 7.283e-06 0.0001662 0.0003593 0.01% Amr::timeStep() 10 0.0001778 0.000217 0.0003465 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002784 0.0002921 0.0003101 0.01% Castro::clean_state() 62 0.0001459 0.0001918 0.0002122 0.01% Castro::do_advance_ctu() 10 0.0001339 0.0001452 0.0001591 0.00% Castro::finalize_advance() 10 8.374e-05 0.0001018 0.0001194 0.00% Castro::do_old_sources() 10 8.172e-05 9.286e-05 0.0001187 0.00% FillPatchIterator::FillFromLevel0() 41 9.789e-05 0.0001069 0.000118 0.00% StateDataPhysBCFunct::() 41 8.854e-05 9.858e-05 0.0001165 0.00% Castro::enforce_consistent_e() 1 7.757e-05 8.445e-05 9.453e-05 0.00% FabArray::ParallelCopy() 41 7.168e-05 7.72e-05 8.167e-05 0.00% Castro::construct_old_source() 50 6.169e-05 6.947e-05 8.101e-05 0.00% Castro::Castro() 1 5.317e-05 6.819e-05 8.076e-05 0.00% FillPatchSingleLevel 41 6.502e-05 6.781e-05 7.108e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 5.353e-05 7.064e-05 0.00% Amr::FinalizeInit() 1 3.505e-06 1.227e-05 6.823e-05 0.00% Castro::do_new_sources() 10 5.522e-05 6.103e-05 6.777e-05 0.00% FabArrayBase::getCPC() 41 4.09e-05 5.59e-05 6.299e-05 0.00% Castro::advance() 10 3.481e-05 4.761e-05 6.208e-05 0.00% Castro::apply_source_to_state() 20 4.18e-05 4.824e-05 6.055e-05 0.00% Castro::subcycle_advance_ctu() 10 4.067e-05 4.618e-05 5.505e-05 0.00% Castro::construct_new_gravity() 10 3.21e-05 4.041e-05 4.867e-05 0.00% Castro::construct_old_gravity() 10 3.157e-05 3.621e-05 3.997e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.763e-05 2.35e-05 3.118e-05 0.00% Castro::enforce_speed_limit() 62 2.595e-05 2.773e-05 3.092e-05 0.00% Castro::expand_state() 10 2.095e-05 2.54e-05 3.073e-05 0.00% Castro::check_for_nan() 20 2.14e-05 2.391e-05 2.976e-05 0.00% FabArrayBase::CPC::define() 2 2.215e-05 2.524e-05 2.936e-05 0.00% Amr::defBaseLevel() 1 1.697e-05 2.126e-05 2.497e-05 0.00% Castro::post_timestep() 10 1.356e-05 1.582e-05 2.311e-05 0.00% Castro::post_init() 1 1.37e-05 1.54e-05 1.865e-05 0.00% Amr::initSubcycle() 1 9.994e-06 1.391e-05 1.779e-05 0.00% Gravity::set_mass_offset() 10 8.625e-06 1.123e-05 1.373e-05 0.00% Castro::retry_advance_ctu() 10 6.708e-06 7.926e-06 1.276e-05 0.00% Gravity::swapTimeLevels() 10 6.528e-06 9.796e-06 1.168e-05 0.00% Castro::FluxRegCrseInit 10 6.849e-06 8.9e-06 1.148e-05 0.00% Castro::create_source_corrector() 10 8.015e-06 8.829e-06 1.004e-05 0.00% Castro::computeNewDt() 9 7.251e-06 8.457e-06 9.656e-06 0.00% Amr::initialInit() 1 1.373e-06 3.186e-06 7.7e-06 0.00% Amr::init() 1 1.93e-06 2.767e-06 6.581e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.11e-06 4.866e-06 6.502e-06 0.00% Amr::InitializeInit() 1 2.059e-06 2.57e-06 4.666e-06 0.00% Castro::computeInitialDt() 2 3.093e-06 3.687e-06 4.28e-06 0.00% Castro::post_regrid() 1 2.144e-06 2.742e-06 3.288e-06 0.00% Castro::FluxRegFineAdd() 10 1.876e-06 2.253e-06 3.078e-06 0.00% DistributionMapping::Distribute() 1 9.64e-07 1.222e-06 1.349e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.612 3.613 3.613 100.00% Amr::coarseTimeStep() 10 3.342 3.342 3.342 92.49% Amr::timeStep() 10 3.328 3.329 3.33 92.17% Castro::advance() 10 3.313 3.314 3.314 91.73% Castro::subcycle_advance_ctu() 10 3.225 3.234 3.24 89.68% Castro::do_advance_ctu() 10 3.225 3.234 3.24 89.68% Castro::construct_ctu_hydro_source() 10 2.495 2.499 2.505 69.32% Gravity::make_radial_gravity() 21 0.3004 0.3125 0.3299 9.13% Amr::init() 1 0.2211 0.2212 0.2214 6.13% Gravity::get_new_grav_vector() 11 0.2051 0.2099 0.213 5.89% AmrLevel::FillPatch() 41 0.1764 0.1967 0.2116 5.86% Amr::initialInit() 1 0.208 0.2084 0.2087 5.78% Castro::construct_old_gravity() 10 0.1776 0.1838 0.1973 5.46% Gravity::get_old_grav_vector() 10 0.177 0.1832 0.1968 5.45% Castro::construct_new_gravity() 10 0.1835 0.1875 0.1897 5.25% Amr::InitializeInit() 1 0.06554 0.1237 0.182 5.04% Amr::defBaseLevel() 1 0.06554 0.1237 0.182 5.04% FillPatchIterator::Initialize 41 0.1473 0.1664 0.1786 4.94% Castro::initialize_do_advance() 10 0.157 0.1683 0.1776 4.92% check_for_negative_density() 10 0.006525 0.1131 0.1696 4.70% Castro::initData() 1 0.05049 0.1047 0.16 4.43% Castro::estTimeStep() 21 0.03617 0.09044 0.155 4.29% Amr::FinalizeInit() 1 0.02595 0.08461 0.1431 3.96% FillPatchIterator::FillFromLevel0() 41 0.1092 0.1252 0.1406 3.89% FillPatchSingleLevel 41 0.1091 0.1251 0.1405 3.89% Castro::expand_state() 10 0.1004 0.114 0.1244 3.44% Castro::clean_state() 62 0.1109 0.1155 0.1202 3.33% Castro::computeInitialDt() 2 0.002176 0.06059 0.119 3.29% FabArray::ParallelCopy() 41 0.07643 0.09285 0.1094 3.03% Castro::do_old_sources() 10 0.08766 0.09166 0.09515 2.63% FabArray::setVal() 143 0.06416 0.07298 0.08514 2.36% amrex::Copy() 193 0.06374 0.07661 0.08498 2.35% Castro::initialize_advance() 10 0.06944 0.07572 0.08496 2.35% Castro::do_new_sources() 10 0.05883 0.06545 0.07506 2.08% FabArray::ParallelCopy_finish() 41 0.03581 0.05238 0.07468 2.07% Castro::computeTemp() 63 0.06363 0.06784 0.07077 1.96% Amr::writePlotFile() 2 0.05741 0.05758 0.05782 1.60% Castro::reset_internal_energy(MultiFab) 63 0.04557 0.04821 0.05017 1.39% Castro::reset_internal_energy(Fab) 1008 0.04529 0.04792 0.04986 1.38% Castro::normalize_species() 62 0.04127 0.04215 0.04336 1.20% FabArray::ParallelCopy_nowait() 41 0.03462 0.04039 0.04247 1.18% Castro::construct_new_source() 50 0.0279 0.03085 0.03467 0.96% StateDataPhysBCFunct::() 41 0.03024 0.0322 0.03357 0.93% StateData::FillBoundary(geom) 41 0.03013 0.0321 0.03348 0.93% Gravity::interpolate_monopole_grav() 21 0.02783 0.02928 0.03001 0.83% Castro::finalize_do_advance() 10 0.01197 0.02203 0.02856 0.79% Castro::construct_new_gravity_source() 10 0.02158 0.02453 0.02817 0.78% Castro::post_init() 1 0.02329 0.02359 0.02379 0.66% Castro::post_timestep() 10 0.01503 0.01557 0.01582 0.44% Castro::Castro() 1 0.009264 0.01204 0.01438 0.40% Castro::apply_source_to_state() 20 0.01057 0.01279 0.0137 0.38% FabArray::Saxpy() 20 0.01052 0.01275 0.01366 0.38% Castro::check_for_nan() 20 0.01076 0.01159 0.0127 0.35% MultiFab::contains_nan() 20 0.01073 0.01157 0.01268 0.35% VisMF::Write(FabArray) 2 0.008185 0.009195 0.01161 0.32% FabArray::setDomainBndry() 41 0.007259 0.009507 0.01152 0.32% Castro::construct_old_source() 50 0.0069 0.009491 0.01011 0.28% Castro::construct_old_gravity_source() 10 0.00683 0.009422 0.01004 0.28% Castro::initMFs() 1 0.006316 0.008232 0.009755 0.27% Castro::computeNewDt() 9 0.008986 0.009001 0.009012 0.25% AmrLevel::AmrLevel(dm) 1 0.005284 0.006803 0.008013 0.22% StateData::define() 4 0.005267 0.006779 0.007986 0.22% Castro::enforce_min_density() 62 0.005873 0.006163 0.006727 0.19% Castro::finalize_advance() 10 0.002997 0.003799 0.004558 0.13% Castro::swap_state_time_levels() 10 0.003144 0.004099 0.004434 0.12% Castro::buildMetrics() 1 0.001598 0.002114 0.002513 0.07% Castro::post_regrid() 1 0.001487 0.001556 0.001627 0.05% Amr::InitAmr() 1 0.000376 0.0005429 0.0006827 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.27e-05 0.0001723 0.000367 0.01% DistributionMapping::LeastUsedCPUs() 1 7.283e-06 0.0001662 0.0003593 0.01% Castro::enforce_consistent_e() 1 7.757e-05 8.445e-05 9.453e-05 0.00% FabArrayBase::getCPC() 41 6.425e-05 8.114e-05 8.819e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 5.353e-05 7.064e-05 0.00% Castro::enforce_speed_limit() 62 2.595e-05 2.773e-05 3.092e-05 0.00% FabArrayBase::CPC::define() 2 2.215e-05 2.524e-05 2.936e-05 0.00% Amr::initSubcycle() 1 9.994e-06 1.391e-05 1.779e-05 0.00% Gravity::set_mass_offset() 10 8.625e-06 1.123e-05 1.373e-05 0.00% Castro::retry_advance_ctu() 10 6.708e-06 7.926e-06 1.276e-05 0.00% Gravity::swapTimeLevels() 10 6.528e-06 9.796e-06 1.168e-05 0.00% Castro::FluxRegCrseInit 10 6.849e-06 8.9e-06 1.148e-05 0.00% Castro::create_source_corrector() 10 8.015e-06 8.829e-06 1.004e-05 0.00% Castro::FluxRegFineAdd() 10 1.876e-06 2.253e-06 3.078e-06 0.00% DistributionMapping::Distribute() 1 9.64e-07 1.222e-06 1.349e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-30-g2ecafcff4013) finalized