Initializing AMReX (24.02-34-g3525b4a3f27e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-34-g3525b4a3f27e) initialized Starting run at 06:40:06 UTC on 2024-03-04. Successfully read inputs file ... Castro git describe: 24.02-27-g465a83f5a AMReX git describe: 24.02-34-g3525b4a3f Microphysics git describe: 24.03-1-gce331bc8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013590302 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36003727 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338519845 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329665414 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329798419 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329088094 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358258928 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316064369 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309605832 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312086398 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310845485 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007596093 seconds Ending run at 06:40:09 UTC on 2024-03-04. Run time = 3.501123701 Run time without initialization = 3.307534293 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5 ... 3.5 ... 3.501 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2852 2.3607 2.3997 68.54% Gravity::make_radial_gravity() 21 0.2864 0.2961 0.3184 9.10% check_for_negative_density() 10 0.02616 0.06467 0.1435 4.10% Castro::initData() 1 0.04938 0.08902 0.1281 3.66% Castro::estTimeStep() 21 0.02217 0.06722 0.1126 3.22% FabArray::ParallelCopy_finish() 41 0.03708 0.06111 0.1025 2.93% amrex::Copy() 193 0.0629 0.08254 0.09954 2.84% FabArray::setVal() 143 0.06087 0.07072 0.07845 2.24% Castro::reset_internal_energy(Fab) 1008 0.04549 0.04725 0.04913 1.40% FabArray::ParallelCopy_nowait() 41 0.03429 0.04117 0.04286 1.22% Castro::normalize_species() 62 0.04136 0.04174 0.04256 1.22% FillPatchIterator::Initialize 41 0.02702 0.03328 0.03669 1.05% StateData::FillBoundary(geom) 41 0.03033 0.0326 0.03528 1.01% Gravity::interpolate_monopole_grav() 21 0.02788 0.03012 0.03295 0.94% Castro::construct_new_gravity_source() 10 0.02136 0.02339 0.02495 0.71% Castro::computeTemp() 63 0.0182 0.01929 0.02033 0.58% Castro::initialize_do_advance() 10 0.01171 0.01748 0.01954 0.56% Castro::initialize_advance() 10 0.008815 0.01209 0.01535 0.44% FabArray::Saxpy() 20 0.01075 0.01283 0.01375 0.39% MultiFab::contains_nan() 20 0.01054 0.01161 0.01258 0.36% VisMF::Write(FabArray) 2 0.008803 0.009477 0.01253 0.36% FabArray::setDomainBndry() 41 0.006845 0.009465 0.01097 0.31% Amr::writePlotFile() 2 0.006585 0.009501 0.01032 0.29% Castro::construct_old_gravity_source() 10 0.006558 0.009395 0.01016 0.29% Castro::initMFs() 1 0.00648 0.006925 0.007353 0.21% Castro::construct_new_source() 50 0.00564 0.006432 0.00677 0.19% Castro::enforce_min_density() 62 0.005682 0.006079 0.00644 0.18% StateData::define() 4 0.00542 0.005865 0.006092 0.17% main() 1 0.003529 0.004349 0.00513 0.15% Castro::swap_state_time_levels() 10 0.002465 0.004217 0.004944 0.14% Gravity::get_new_grav_vector() 11 0.002631 0.003574 0.003938 0.11% Gravity::get_old_grav_vector() 10 0.001561 0.002043 0.002425 0.07% Amr::coarseTimeStep() 10 0.001201 0.001885 0.002228 0.06% Castro::buildMetrics() 1 0.00152 0.001648 0.001731 0.05% Castro::finalize_do_advance() 10 0.0004789 0.001034 0.001292 0.04% AmrLevel::FillPatch() 41 0.0007561 0.0008511 0.0009498 0.03% Amr::InitAmr() 1 0.0003645 0.0004061 0.0004834 0.01% Amr::timeStep() 10 0.0001377 0.000201 0.0004061 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002779 0.0002947 0.0003223 0.01% Castro::clean_state() 62 0.0001307 0.0001455 0.0001611 0.00% Castro::do_advance_ctu() 10 0.000115 0.0001354 0.000157 0.00% StateDataPhysBCFunct::() 41 7.691e-05 9.971e-05 0.0001227 0.00% Castro::do_old_sources() 10 6.596e-05 8.921e-05 0.0001194 0.00% Castro::finalize_advance() 10 6.971e-05 9.363e-05 0.0001173 0.00% FillPatchIterator::FillFromLevel0() 41 9.315e-05 0.0001049 0.0001152 0.00% Castro::enforce_consistent_e() 1 7.63e-05 8.987e-05 0.0001108 0.00% DistributionMapping::LeastUsedCPUs() 1 6.727e-06 7.54e-05 0.0001103 0.00% Castro::Castro() 1 6.054e-05 6.979e-05 9.117e-05 0.00% Castro::construct_old_source() 50 5.644e-05 6.895e-05 8.416e-05 0.00% FabArray::ParallelCopy() 41 6.223e-05 7.476e-05 8.362e-05 0.00% Amr::FinalizeInit() 1 4.367e-06 1.376e-05 7.232e-05 0.00% FillPatchSingleLevel 41 5.503e-05 6.13e-05 7.134e-05 0.00% Castro::do_new_sources() 10 4.892e-05 6.101e-05 6.885e-05 0.00% Amr::writeSmallPlotFile() 1 3.23e-05 4.89e-05 6.596e-05 0.00% Castro::subcycle_advance_ctu() 10 3.95e-05 4.562e-05 6.515e-05 0.00% FabArrayBase::getCPC() 41 3.494e-05 4.794e-05 6.475e-05 0.00% Castro::advance() 10 4.041e-05 4.647e-05 5.121e-05 0.00% Castro::apply_source_to_state() 20 3.21e-05 3.998e-05 4.925e-05 0.00% Castro::construct_old_gravity() 10 2.876e-05 3.415e-05 4.205e-05 0.00% Castro::construct_new_gravity() 10 2.817e-05 3.242e-05 3.974e-05 0.00% Amr::defBaseLevel() 1 1.766e-05 2.146e-05 3.429e-05 0.00% Castro::expand_state() 10 1.844e-05 2.626e-05 3.395e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.855e-05 3.098e-05 0.00% FabArrayBase::CPC::define() 2 2.152e-05 2.596e-05 2.994e-05 0.00% Castro::check_for_nan() 20 2.095e-05 2.324e-05 2.59e-05 0.00% Amr::initSubcycle() 1 9.628e-06 1.27e-05 2.472e-05 0.00% Castro::post_timestep() 10 1.215e-05 1.55e-05 2.429e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.785e-05 1.99e-05 2.299e-05 0.00% Castro::post_init() 1 1.464e-05 1.61e-05 2.099e-05 0.00% Castro::retry_advance_ctu() 10 6.815e-06 1.146e-05 1.829e-05 0.00% Gravity::set_mass_offset() 10 8.816e-06 1.012e-05 1.244e-05 0.00% Gravity::swapTimeLevels() 10 8.308e-06 9.361e-06 1.113e-05 0.00% Castro::computeNewDt() 9 7.983e-06 9.073e-06 9.985e-06 0.00% Castro::create_source_corrector() 10 7.253e-06 8.515e-06 9.48e-06 0.00% Castro::FluxRegCrseInit 10 6.48e-06 7.814e-06 8.953e-06 0.00% Amr::initialInit() 1 1.346e-06 3.339e-06 8.672e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.99e-06 5.013e-06 8.64e-06 0.00% Amr::init() 1 2.369e-06 3.038e-06 6.497e-06 0.00% Amr::InitializeInit() 1 1.997e-06 2.692e-06 4.828e-06 0.00% Castro::computeInitialDt() 2 2.83e-06 3.84e-06 4.488e-06 0.00% Castro::post_regrid() 1 1.73e-06 3.14e-06 4.424e-06 0.00% Castro::FluxRegFineAdd() 10 1.66e-06 2.345e-06 2.89e-06 0.00% DistributionMapping::Distribute() 1 8.94e-07 1.056e-06 1.203e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.5 3.5 3.501 100.00% Amr::coarseTimeStep() 10 3.295 3.295 3.295 94.11% Amr::timeStep() 10 3.282 3.283 3.283 93.77% Castro::advance() 10 3.266 3.267 3.267 93.31% Castro::subcycle_advance_ctu() 10 3.186 3.19 3.201 91.42% Castro::do_advance_ctu() 10 3.186 3.19 3.201 91.42% Castro::construct_ctu_hydro_source() 10 2.442 2.446 2.45 69.98% Gravity::make_radial_gravity() 21 0.3026 0.3128 0.3319 9.48% AmrLevel::FillPatch() 41 0.1898 0.2095 0.2252 6.43% Castro::construct_old_gravity() 10 0.1881 0.1968 0.2124 6.07% Gravity::get_old_grav_vector() 10 0.1874 0.1962 0.2119 6.05% Gravity::get_new_grav_vector() 11 0.2057 0.2066 0.2074 5.92% FillPatchIterator::Initialize 41 0.1581 0.178 0.2015 5.75% Amr::init() 1 0.1929 0.193 0.1931 5.51% Castro::construct_new_gravity() 10 0.1804 0.1811 0.1819 5.19% Amr::initialInit() 1 0.1787 0.179 0.1792 5.12% Castro::initialize_do_advance() 10 0.1586 0.1652 0.1736 4.96% FillPatchIterator::FillFromLevel0() 41 0.1117 0.1353 0.1676 4.79% FillPatchSingleLevel 41 0.1116 0.1352 0.1675 4.78% Amr::InitializeInit() 1 0.06875 0.11 0.1499 4.28% Amr::defBaseLevel() 1 0.06875 0.11 0.1499 4.28% check_for_negative_density() 10 0.02616 0.06467 0.1435 4.10% FabArray::ParallelCopy() 41 0.07903 0.1024 0.137 3.91% Castro::initData() 1 0.05342 0.09298 0.132 3.77% Castro::expand_state() 10 0.1045 0.1107 0.1172 3.35% Castro::clean_state() 62 0.1121 0.1139 0.1166 3.33% Castro::estTimeStep() 21 0.02217 0.06722 0.1126 3.22% Amr::FinalizeInit() 1 0.02912 0.06904 0.1104 3.15% Castro::do_old_sources() 10 0.09277 0.1019 0.108 3.08% FabArray::ParallelCopy_finish() 41 0.03708 0.06111 0.1025 2.93% amrex::Copy() 193 0.0629 0.08254 0.09954 2.84% Castro::computeInitialDt() 2 0.002365 0.04232 0.08345 2.38% FabArray::setVal() 143 0.06087 0.07072 0.07845 2.24% Castro::initialize_advance() 10 0.06207 0.07316 0.07718 2.20% Castro::computeTemp() 63 0.06498 0.06684 0.06975 1.99% Castro::do_new_sources() 10 0.05937 0.06297 0.06744 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04579 0.04755 0.04942 1.41% Castro::reset_internal_energy(Fab) 1008 0.04549 0.04725 0.04913 1.40% FabArray::ParallelCopy_nowait() 41 0.03438 0.04124 0.04293 1.23% Castro::normalize_species() 62 0.04136 0.04174 0.04256 1.22% StateDataPhysBCFunct::() 41 0.03043 0.0327 0.03538 1.01% StateData::FillBoundary(geom) 41 0.03033 0.0326 0.03528 1.01% Gravity::interpolate_monopole_grav() 21 0.02788 0.03012 0.03295 0.94% Castro::construct_new_source() 50 0.027 0.02983 0.03154 0.90% Castro::post_init() 1 0.02626 0.02647 0.02673 0.76% Castro::construct_new_gravity_source() 10 0.02136 0.02339 0.02495 0.71% Amr::writePlotFile() 2 0.02145 0.02171 0.02203 0.63% Castro::finalize_do_advance() 10 0.01179 0.01685 0.02057 0.59% Castro::post_timestep() 10 0.01525 0.01555 0.01605 0.46% Castro::apply_source_to_state() 20 0.01079 0.01287 0.01379 0.39% FabArray::Saxpy() 20 0.01075 0.01283 0.01375 0.39% Castro::check_for_nan() 20 0.01057 0.01163 0.0126 0.36% MultiFab::contains_nan() 20 0.01054 0.01161 0.01258 0.36% VisMF::Write(FabArray) 2 0.008803 0.009477 0.01253 0.36% Castro::Castro() 1 0.009853 0.01099 0.01175 0.34% FabArray::setDomainBndry() 41 0.006845 0.009465 0.01097 0.31% Castro::construct_old_source() 50 0.006617 0.009464 0.01024 0.29% Castro::construct_old_gravity_source() 10 0.006558 0.009395 0.01016 0.29% Castro::computeNewDt() 9 0.009085 0.009095 0.009101 0.26% Castro::initMFs() 1 0.00648 0.006925 0.007353 0.21% Castro::enforce_min_density() 62 0.005682 0.006079 0.00644 0.18% AmrLevel::AmrLevel(dm) 1 0.005441 0.005885 0.006111 0.17% StateData::define() 4 0.00542 0.005865 0.006092 0.17% Castro::swap_state_time_levels() 10 0.002465 0.004217 0.004944 0.14% Castro::finalize_advance() 10 0.003093 0.003322 0.003533 0.10% Castro::buildMetrics() 1 0.001631 0.001784 0.001884 0.05% Castro::post_regrid() 1 0.001487 0.001586 0.001819 0.05% Amr::InitAmr() 1 0.0003756 0.0004188 0.000493 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.163e-05 8.147e-05 0.0001201 0.00% Castro::enforce_consistent_e() 1 7.63e-05 8.987e-05 0.0001108 0.00% DistributionMapping::LeastUsedCPUs() 1 6.727e-06 7.54e-05 0.0001103 0.00% FabArrayBase::getCPC() 41 6.144e-05 7.39e-05 9.105e-05 0.00% Amr::writeSmallPlotFile() 1 3.23e-05 4.89e-05 6.596e-05 0.00% Castro::enforce_speed_limit() 62 2.571e-05 2.855e-05 3.098e-05 0.00% FabArrayBase::CPC::define() 2 2.152e-05 2.596e-05 2.994e-05 0.00% Amr::initSubcycle() 1 9.628e-06 1.27e-05 2.472e-05 0.00% Castro::retry_advance_ctu() 10 6.815e-06 1.146e-05 1.829e-05 0.00% Gravity::set_mass_offset() 10 8.816e-06 1.012e-05 1.244e-05 0.00% Gravity::swapTimeLevels() 10 8.308e-06 9.361e-06 1.113e-05 0.00% Castro::create_source_corrector() 10 7.253e-06 8.515e-06 9.48e-06 0.00% Castro::FluxRegCrseInit 10 6.48e-06 7.814e-06 8.953e-06 0.00% Castro::FluxRegFineAdd() 10 1.66e-06 2.345e-06 2.89e-06 0.00% DistributionMapping::Distribute() 1 8.94e-07 1.056e-06 1.203e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-34-g3525b4a3f27e) finalized