Initializing AMReX (24.02-34-g3525b4a3f27e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-34-g3525b4a3f27e) initialized Starting run at 06:33:18 UTC on 2024-03-05. Successfully read inputs file ... Castro git describe: 24.02-27-g465a83f5a AMReX git describe: 24.02-34-g3525b4a3f Microphysics git describe: 24.03-1-gce331bc8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014670593 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355534943 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360192137 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337018119 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337583922 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338343737 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.373879916 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.321219834 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315312159 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314601992 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316546474 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007563619 seconds Ending run at 06:33:22 UTC on 2024-03-05. Run time = 3.566440507 Run time without initialization = 3.383300677 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.566 ... 3.566 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3163 2.3799 2.4787 69.50% Gravity::make_radial_gravity() 21 0.2887 0.2962 0.313 8.78% check_for_negative_density() 10 0.00579 0.109 0.1739 4.87% Castro::initData() 1 0.0475 0.08458 0.1199 3.36% Castro::estTimeStep() 21 0.0243 0.06349 0.1044 2.93% FabArray::setVal() 143 0.06624 0.0764 0.09348 2.62% FabArray::ParallelCopy_finish() 41 0.03675 0.0658 0.09002 2.52% amrex::Copy() 193 0.06748 0.07881 0.08946 2.51% Castro::reset_internal_energy(Fab) 1008 0.04591 0.04771 0.04933 1.38% FabArray::ParallelCopy_nowait() 41 0.03804 0.04212 0.04374 1.23% Castro::normalize_species() 62 0.04109 0.04188 0.04308 1.21% FillPatchIterator::Initialize 41 0.02793 0.03349 0.03953 1.11% StateData::FillBoundary(geom) 41 0.02987 0.03223 0.03421 0.96% Gravity::interpolate_monopole_grav() 21 0.02718 0.02916 0.03006 0.84% Castro::construct_new_gravity_source() 10 0.02142 0.0235 0.02577 0.72% Castro::computeTemp() 63 0.01801 0.02041 0.02564 0.72% Castro::initialize_do_advance() 10 0.01237 0.01936 0.02365 0.66% Castro::initialize_advance() 10 0.01058 0.01323 0.01602 0.45% FabArray::Saxpy() 20 0.01177 0.01286 0.01412 0.40% VisMF::Write(FabArray) 2 0.008942 0.009797 0.01321 0.37% MultiFab::contains_nan() 20 0.01045 0.01117 0.01187 0.33% FabArray::setDomainBndry() 41 0.007635 0.009368 0.01068 0.30% Castro::construct_old_gravity_source() 10 0.006741 0.009503 0.01041 0.29% Amr::writePlotFile() 2 0.00628 0.009638 0.01041 0.29% Castro::construct_new_source() 50 0.005721 0.006395 0.006857 0.19% Castro::initMFs() 1 0.006416 0.006479 0.006698 0.19% Castro::enforce_min_density() 62 0.005961 0.006166 0.006537 0.18% StateData::define() 4 0.005339 0.005482 0.006011 0.17% Castro::swap_state_time_levels() 10 0.00334 0.004465 0.004846 0.14% main() 1 0.003796 0.004428 0.004747 0.13% Gravity::get_new_grav_vector() 11 0.00271 0.003488 0.003847 0.11% Amr::coarseTimeStep() 10 0.001137 0.001529 0.002464 0.07% Gravity::get_old_grav_vector() 10 0.001499 0.00196 0.002296 0.06% Castro::buildMetrics() 1 0.001531 0.001546 0.001568 0.04% Castro::finalize_do_advance() 10 0.0005014 0.001057 0.001369 0.04% AmrLevel::FillPatch() 41 0.0008631 0.0009544 0.001196 0.03% Amr::timeStep() 10 0.0001401 0.0002112 0.0004919 0.01% Amr::InitAmr() 1 0.0003413 0.0003697 0.0004742 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002655 0.000279 0.0003062 0.01% Castro::do_advance_ctu() 10 0.0001208 0.0001468 0.0001818 0.01% Castro::clean_state() 62 0.0001291 0.0001453 0.0001721 0.00% FillPatchIterator::FillFromLevel0() 41 9.612e-05 0.0001147 0.0001465 0.00% DistributionMapping::LeastUsedCPUs() 1 7.405e-06 0.0001111 0.0001377 0.00% StateDataPhysBCFunct::() 41 8.399e-05 9.733e-05 0.0001201 0.00% Castro::finalize_advance() 10 7.764e-05 9.738e-05 0.0001143 0.00% Castro::do_old_sources() 10 7.261e-05 9.05e-05 0.0001108 0.00% Castro::construct_old_source() 50 5.838e-05 7.494e-05 9.986e-05 0.00% FabArray::ParallelCopy() 41 6.443e-05 7.924e-05 9.728e-05 0.00% Castro::enforce_consistent_e() 1 7.453e-05 8.857e-05 9.633e-05 0.00% Castro::Castro() 1 5.953e-05 7.985e-05 9.131e-05 0.00% Castro::do_new_sources() 10 5.442e-05 6.57e-05 8.784e-05 0.00% FillPatchSingleLevel 41 5.881e-05 6.826e-05 8.343e-05 0.00% Amr::FinalizeInit() 1 3.44e-06 1.404e-05 7.752e-05 0.00% Castro::advance() 10 4.304e-05 5.247e-05 7.199e-05 0.00% Castro::subcycle_advance_ctu() 10 4.35e-05 5.719e-05 7.086e-05 0.00% FabArrayBase::getCPC() 41 3.647e-05 4.778e-05 5.802e-05 0.00% Castro::apply_source_to_state() 20 3.738e-05 4.635e-05 5.58e-05 0.00% Castro::construct_old_gravity() 10 2.975e-05 3.938e-05 5.54e-05 0.00% Amr::writeSmallPlotFile() 1 3.136e-05 4.039e-05 5.226e-05 0.00% Castro::construct_new_gravity() 10 3.045e-05 3.464e-05 4.4e-05 0.00% Castro::enforce_speed_limit() 62 2.451e-05 2.968e-05 3.961e-05 0.00% Castro::expand_state() 10 2.042e-05 2.604e-05 3.309e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.393e-05 2.723e-05 3.161e-05 0.00% FabArrayBase::CPC::define() 2 2.123e-05 2.531e-05 3.147e-05 0.00% Castro::check_for_nan() 20 2.177e-05 2.546e-05 2.942e-05 0.00% Castro::post_init() 1 1.414e-05 1.742e-05 2.429e-05 0.00% Amr::defBaseLevel() 1 1.692e-05 1.855e-05 2.097e-05 0.00% Castro::post_timestep() 10 1.277e-05 1.518e-05 1.869e-05 0.00% Gravity::set_mass_offset() 10 8.64e-06 1.075e-05 1.525e-05 0.00% Gravity::swapTimeLevels() 10 9.388e-06 1.099e-05 1.271e-05 0.00% Amr::initSubcycle() 1 9.452e-06 1.002e-05 1.081e-05 0.00% Castro::create_source_corrector() 10 7.873e-06 9.194e-06 1.014e-05 0.00% Castro::FluxRegCrseInit 10 6.624e-06 7.943e-06 9.966e-06 0.00% Castro::computeNewDt() 9 7.724e-06 8.283e-06 9.841e-06 0.00% Castro::retry_advance_ctu() 10 6.051e-06 7.128e-06 8.487e-06 0.00% Castro::computeInitialDt() 2 2.848e-06 4.178e-06 5.613e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.397e-06 4.399e-06 5.59e-06 0.00% Castro::post_regrid() 1 1.773e-06 3.777e-06 5.379e-06 0.00% Amr::InitializeInit() 1 1.851e-06 2.359e-06 4.513e-06 0.00% Amr::init() 1 1.886e-06 2.396e-06 3.649e-06 0.00% Castro::FluxRegFineAdd() 10 2.271e-06 2.619e-06 3.266e-06 0.00% Amr::initialInit() 1 1.09e-06 1.581e-06 2.342e-06 0.00% DistributionMapping::Distribute() 1 8.68e-07 9.705e-07 1.098e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.566 3.566 3.566 100.00% Amr::coarseTimeStep() 10 3.371 3.371 3.371 94.52% Amr::timeStep() 10 3.358 3.359 3.36 94.20% Castro::advance() 10 3.343 3.343 3.344 93.75% Castro::subcycle_advance_ctu() 10 3.243 3.26 3.268 91.64% Castro::do_advance_ctu() 10 3.243 3.26 3.268 91.64% Castro::construct_ctu_hydro_source() 10 2.506 2.51 2.513 70.45% Gravity::make_radial_gravity() 21 0.3052 0.3124 0.3272 9.18% AmrLevel::FillPatch() 41 0.1881 0.2145 0.2305 6.46% Gravity::get_new_grav_vector() 11 0.2048 0.2063 0.2078 5.83% Castro::construct_old_gravity() 10 0.1849 0.19 0.2023 5.67% Gravity::get_old_grav_vector() 10 0.1841 0.1893 0.2017 5.66% FillPatchIterator::Initialize 41 0.1551 0.1834 0.1985 5.57% Castro::initialize_do_advance() 10 0.1713 0.1834 0.1941 5.44% Castro::construct_new_gravity() 10 0.1824 0.1831 0.1842 5.16% Amr::init() 1 0.1825 0.1826 0.1826 5.12% check_for_negative_density() 10 0.00579 0.109 0.1739 4.87% Amr::initialInit() 1 0.1677 0.1678 0.168 4.71% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1406 0.1584 4.44% FillPatchSingleLevel 41 0.1132 0.1405 0.1583 4.44% Amr::InitializeInit() 1 0.06813 0.1055 0.1411 3.96% Amr::defBaseLevel() 1 0.06812 0.1055 0.1411 3.96% Castro::expand_state() 10 0.1088 0.1269 0.1393 3.91% FabArray::ParallelCopy() 41 0.08062 0.1081 0.1282 3.60% Castro::clean_state() 62 0.1124 0.1156 0.1236 3.47% Castro::initData() 1 0.0516 0.08868 0.1235 3.46% Castro::estTimeStep() 21 0.0243 0.06349 0.1044 2.93% Castro::do_old_sources() 10 0.09092 0.09676 0.1001 2.81% Amr::FinalizeInit() 1 0.02687 0.06236 0.09976 2.80% Castro::initialize_advance() 10 0.07139 0.07994 0.09727 2.73% FabArray::setVal() 143 0.06624 0.0764 0.09348 2.62% FabArray::ParallelCopy_finish() 41 0.03675 0.0658 0.09002 2.52% amrex::Copy() 193 0.06748 0.07881 0.08946 2.51% Castro::computeInitialDt() 2 0.002362 0.038 0.07536 2.11% Castro::computeTemp() 63 0.06507 0.0684 0.07483 2.10% Castro::do_new_sources() 10 0.05938 0.063 0.0683 1.92% Castro::reset_internal_energy(MultiFab) 63 0.0462 0.04799 0.0496 1.39% Castro::reset_internal_energy(Fab) 1008 0.04591 0.04771 0.04933 1.38% FabArray::ParallelCopy_nowait() 41 0.03812 0.04219 0.04381 1.23% Castro::normalize_species() 62 0.04109 0.04188 0.04308 1.21% StateDataPhysBCFunct::() 41 0.02999 0.03232 0.03431 0.96% StateData::FillBoundary(geom) 41 0.02987 0.03223 0.03421 0.96% Castro::construct_new_source() 50 0.02715 0.0299 0.03263 0.91% Gravity::interpolate_monopole_grav() 21 0.02718 0.02916 0.03006 0.84% Castro::construct_new_gravity_source() 10 0.02142 0.0235 0.02577 0.72% Castro::post_init() 1 0.02401 0.02411 0.02429 0.68% Amr::writePlotFile() 2 0.0223 0.02245 0.02259 0.63% Castro::finalize_do_advance() 10 0.01192 0.01752 0.02217 0.62% Castro::post_timestep() 10 0.01524 0.0157 0.01606 0.45% Castro::apply_source_to_state() 20 0.0118 0.01291 0.01417 0.40% FabArray::Saxpy() 20 0.01177 0.01286 0.01412 0.40% VisMF::Write(FabArray) 2 0.008942 0.009797 0.01321 0.37% Castro::check_for_nan() 20 0.01048 0.0112 0.0119 0.33% MultiFab::contains_nan() 20 0.01045 0.01117 0.01187 0.33% Castro::Castro() 1 0.01098 0.01113 0.01146 0.32% FabArray::setDomainBndry() 41 0.007635 0.009368 0.01068 0.30% Castro::construct_old_source() 50 0.006809 0.009578 0.01051 0.29% Castro::construct_old_gravity_source() 10 0.006741 0.009503 0.01041 0.29% Castro::computeNewDt() 9 0.009028 0.009035 0.009039 0.25% Castro::initMFs() 1 0.006416 0.006479 0.006698 0.19% Castro::enforce_min_density() 62 0.005961 0.006166 0.006537 0.18% AmrLevel::AmrLevel(dm) 1 0.005365 0.005509 0.006037 0.17% StateData::define() 4 0.005339 0.005482 0.006011 0.17% Castro::swap_state_time_levels() 10 0.00334 0.004465 0.004846 0.14% Castro::finalize_advance() 10 0.003164 0.003375 0.003569 0.10% Castro::buildMetrics() 1 0.001662 0.001679 0.001707 0.05% Castro::post_regrid() 1 0.001502 0.001578 0.001635 0.05% Amr::InitAmr() 1 0.0003512 0.0003798 0.0004842 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.18e-05 0.0001165 0.0001443 0.00% DistributionMapping::LeastUsedCPUs() 1 7.405e-06 0.0001111 0.0001377 0.00% Castro::enforce_consistent_e() 1 7.453e-05 8.857e-05 9.633e-05 0.00% FabArrayBase::getCPC() 41 6.515e-05 7.309e-05 8.61e-05 0.00% Amr::writeSmallPlotFile() 1 3.136e-05 4.039e-05 5.226e-05 0.00% Castro::enforce_speed_limit() 62 2.451e-05 2.968e-05 3.961e-05 0.00% FabArrayBase::CPC::define() 2 2.123e-05 2.531e-05 3.147e-05 0.00% Gravity::set_mass_offset() 10 8.64e-06 1.075e-05 1.525e-05 0.00% Gravity::swapTimeLevels() 10 9.388e-06 1.099e-05 1.271e-05 0.00% Amr::initSubcycle() 1 9.452e-06 1.002e-05 1.081e-05 0.00% Castro::create_source_corrector() 10 7.873e-06 9.194e-06 1.014e-05 0.00% Castro::FluxRegCrseInit 10 6.624e-06 7.943e-06 9.966e-06 0.00% Castro::retry_advance_ctu() 10 6.051e-06 7.128e-06 8.487e-06 0.00% Castro::FluxRegFineAdd() 10 2.271e-06 2.619e-06 3.266e-06 0.00% DistributionMapping::Distribute() 1 8.68e-07 9.705e-07 1.098e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-34-g3525b4a3f27e) finalized