Initializing AMReX (24.02-35-gf1ef81e6c4dc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.02-35-gf1ef81e6c4dc) initialized Starting run at 06:32:42 UTC on 2024-03-07. Successfully read inputs file ... Castro git describe: 24.02-27-g465a83f5a AMReX git describe: 24.02-35-gf1ef81e6c Microphysics git describe: 24.03-1-gce331bc8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013395341 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354992103 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35827925 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334377034 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33327683 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333386671 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.368760965 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319101466 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313110966 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31543322 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314935614 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007584758 seconds Ending run at 06:32:45 UTC on 2024-03-07. Run time = 3.548458843 Run time without initialization = 3.358963624 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.548 ... 3.549 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3313 2.3622 2.3891 67.33% Gravity::make_radial_gravity() 21 0.2899 0.308 0.3175 8.95% check_for_negative_density() 10 0.06575 0.09617 0.1301 3.67% Castro::initData() 1 0.04923 0.08735 0.1279 3.60% Castro::estTimeStep() 21 0.03052 0.06881 0.106 2.99% amrex::Copy() 193 0.07676 0.08435 0.1013 2.85% FabArray::setVal() 143 0.0689 0.07576 0.08373 2.36% FabArray::ParallelCopy_finish() 41 0.03774 0.04912 0.05717 1.61% Castro::reset_internal_energy(Fab) 1008 0.04459 0.04747 0.04925 1.39% FabArray::ParallelCopy_nowait() 41 0.04084 0.04349 0.04702 1.32% Castro::normalize_species() 62 0.04126 0.04178 0.04221 1.19% StateData::FillBoundary(geom) 41 0.02863 0.03232 0.03797 1.07% FillPatchIterator::Initialize 41 0.02755 0.03404 0.0368 1.04% Gravity::interpolate_monopole_grav() 21 0.02735 0.02899 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02294 0.02447 0.02591 0.73% Castro::computeTemp() 63 0.01762 0.01955 0.02066 0.58% Castro::initialize_do_advance() 10 0.01256 0.01716 0.01869 0.53% Castro::initialize_advance() 10 0.01061 0.01314 0.01591 0.45% MultiFab::contains_nan() 20 0.00984 0.01185 0.01469 0.41% FabArray::Saxpy() 20 0.01199 0.01352 0.01429 0.40% FabArray::setDomainBndry() 41 0.007135 0.01076 0.0138 0.39% VisMF::Write(FabArray) 2 0.009127 0.009665 0.012 0.34% Castro::construct_old_gravity_source() 10 0.00846 0.01015 0.01086 0.31% Amr::writePlotFile() 2 0.006265 0.008422 0.008884 0.25% Castro::initMFs() 1 0.006216 0.006642 0.00783 0.22% Castro::enforce_min_density() 62 0.00728 0.007467 0.007723 0.22% Castro::construct_new_source() 50 0.006419 0.0067 0.006991 0.20% StateData::define() 4 0.00524 0.005406 0.00586 0.17% main() 1 0.003798 0.004517 0.00504 0.14% Castro::swap_state_time_levels() 10 0.003346 0.004449 0.00463 0.13% Gravity::get_new_grav_vector() 11 0.002907 0.003532 0.003935 0.11% Amr::coarseTimeStep() 10 0.001177 0.00214 0.002966 0.08% Gravity::get_old_grav_vector() 10 0.001487 0.002009 0.002706 0.08% Castro::buildMetrics() 1 0.001457 0.001526 0.001701 0.05% Castro::finalize_do_advance() 10 0.0009795 0.001317 0.001599 0.05% AmrLevel::FillPatch() 41 0.0007406 0.0009088 0.001104 0.03% Amr::InitAmr() 1 0.0003391 0.0003824 0.0004801 0.01% Amr::timeStep() 10 0.0001875 0.000229 0.0003559 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002756 0.0002907 0.0003112 0.01% StateDataPhysBCFunct::() 41 8.848e-05 0.0001359 0.0001788 0.01% Castro::do_advance_ctu() 10 0.0001327 0.0001534 0.0001784 0.01% Castro::clean_state() 62 0.0001317 0.0001475 0.0001587 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001018 0.0001199 0.0001496 0.00% DistributionMapping::LeastUsedCPUs() 1 7.133e-06 9.843e-05 0.0001322 0.00% Castro::finalize_advance() 10 8.962e-05 0.0001022 0.0001175 0.00% Castro::enforce_consistent_e() 1 8.117e-05 8.982e-05 0.000108 0.00% FabArray::ParallelCopy() 41 7.124e-05 8.684e-05 0.0001028 0.00% Castro::do_old_sources() 10 8.42e-05 9.188e-05 0.0001013 0.00% Castro::Castro() 1 5.827e-05 7.639e-05 9.493e-05 0.00% Castro::do_new_sources() 10 5.641e-05 6.941e-05 8.742e-05 0.00% FillPatchSingleLevel 41 6.084e-05 7.109e-05 8.716e-05 0.00% Castro::construct_old_source() 50 6.666e-05 7.456e-05 8.565e-05 0.00% Amr::writeSmallPlotFile() 1 3.033e-05 6.57e-05 8.5e-05 0.00% FabArrayBase::getCPC() 41 4.203e-05 5.504e-05 7.957e-05 0.00% Amr::FinalizeInit() 1 3.922e-06 1.432e-05 7.94e-05 0.00% Castro::subcycle_advance_ctu() 10 4.565e-05 5.357e-05 6.53e-05 0.00% Castro::construct_old_gravity() 10 3.334e-05 4.679e-05 5.922e-05 0.00% Castro::apply_source_to_state() 20 4.33e-05 4.963e-05 5.58e-05 0.00% Castro::advance() 10 4.342e-05 4.812e-05 5.215e-05 0.00% Castro::construct_new_gravity() 10 3.235e-05 3.683e-05 4.197e-05 0.00% Castro::check_for_nan() 20 1.969e-05 2.295e-05 3.292e-05 0.00% Castro::enforce_speed_limit() 62 2.59e-05 3.022e-05 3.26e-05 0.00% Castro::expand_state() 10 2.211e-05 2.755e-05 3.07e-05 0.00% Amr::defBaseLevel() 1 1.681e-05 2.227e-05 2.995e-05 0.00% FabArrayBase::CPC::define() 2 2.169e-05 2.437e-05 2.909e-05 0.00% Amr::initSubcycle() 1 9.823e-06 1.251e-05 2.435e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.447e-05 1.825e-05 2.326e-05 0.00% Castro::post_timestep() 10 1.252e-05 1.661e-05 2.296e-05 0.00% Castro::post_init() 1 1.468e-05 1.641e-05 1.889e-05 0.00% Gravity::set_mass_offset() 10 9.599e-06 1.195e-05 1.399e-05 0.00% Gravity::swapTimeLevels() 10 8.227e-06 1.143e-05 1.353e-05 0.00% Castro::computeNewDt() 9 7.708e-06 9.454e-06 1.243e-05 0.00% Castro::create_source_corrector() 10 7.252e-06 8.605e-06 1.04e-05 0.00% Castro::FluxRegCrseInit 10 6.205e-06 7.691e-06 9.031e-06 0.00% Castro::retry_advance_ctu() 10 6.054e-06 6.798e-06 7.625e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.645e-06 5.052e-06 6.714e-06 0.00% Amr::init() 1 2.096e-06 3.07e-06 6.57e-06 0.00% Amr::InitializeInit() 1 1.943e-06 2.527e-06 4.791e-06 0.00% Castro::post_regrid() 1 1.6e-06 3.335e-06 4.773e-06 0.00% Castro::computeInitialDt() 2 3.196e-06 3.811e-06 4.45e-06 0.00% Castro::FluxRegFineAdd() 10 1.842e-06 2.342e-06 3.158e-06 0.00% Amr::initialInit() 1 1.435e-06 1.868e-06 2.895e-06 0.00% DistributionMapping::Distribute() 1 8.61e-07 1.145e-06 1.611e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.548 3.549 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.30% Amr::timeStep() 10 3.333 3.334 3.335 93.98% Castro::advance() 10 3.318 3.318 3.318 93.51% Castro::subcycle_advance_ctu() 10 3.233 3.237 3.24 91.31% Castro::do_advance_ctu() 10 3.233 3.237 3.24 91.31% Castro::construct_ctu_hydro_source() 10 2.476 2.479 2.483 69.98% Gravity::make_radial_gravity() 21 0.3064 0.3246 0.3343 9.42% Gravity::get_new_grav_vector() 11 0.2104 0.2116 0.2125 5.99% AmrLevel::FillPatch() 41 0.1909 0.2052 0.2122 5.98% Castro::construct_old_gravity() 10 0.1827 0.1979 0.2063 5.81% Gravity::get_old_grav_vector() 10 0.1817 0.197 0.2058 5.80% Castro::construct_new_gravity() 10 0.1879 0.1887 0.1893 5.33% Amr::init() 1 0.1888 0.1889 0.189 5.33% Castro::initialize_do_advance() 10 0.1626 0.1716 0.1838 5.18% FillPatchIterator::Initialize 41 0.1597 0.1702 0.1783 5.03% Amr::initialInit() 1 0.1753 0.1755 0.1757 4.95% Amr::InitializeInit() 1 0.06887 0.1077 0.149 4.20% Amr::defBaseLevel() 1 0.06886 0.1077 0.149 4.20% Castro::initData() 1 0.05323 0.09147 0.1315 3.71% FillPatchIterator::FillFromLevel0() 41 0.1187 0.1254 0.1305 3.68% FillPatchSingleLevel 41 0.1185 0.1253 0.1304 3.67% check_for_negative_density() 10 0.06575 0.09617 0.1301 3.67% Castro::expand_state() 10 0.1104 0.1163 0.1256 3.54% Castro::clean_state() 62 0.111 0.1158 0.1193 3.36% Amr::FinalizeInit() 1 0.0265 0.06781 0.1064 3.00% Castro::estTimeStep() 21 0.03052 0.06881 0.106 2.99% Castro::do_old_sources() 10 0.09496 0.09994 0.1041 2.93% amrex::Copy() 193 0.07676 0.08435 0.1013 2.85% FabArray::ParallelCopy() 41 0.08035 0.09277 0.09822 2.77% FabArray::setVal() 143 0.0689 0.07576 0.08373 2.36% Castro::computeInitialDt() 2 0.002197 0.04351 0.08226 2.32% Castro::initialize_advance() 10 0.0743 0.07757 0.08153 2.30% Castro::computeTemp() 63 0.06249 0.06731 0.07019 1.98% Castro::do_new_sources() 10 0.06116 0.06538 0.0696 1.96% FabArray::ParallelCopy_finish() 41 0.03774 0.04912 0.05717 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04487 0.04776 0.04954 1.40% Castro::reset_internal_energy(Fab) 1008 0.04459 0.04747 0.04925 1.39% FabArray::ParallelCopy_nowait() 41 0.04094 0.04357 0.0471 1.33% Castro::normalize_species() 62 0.04126 0.04178 0.04221 1.19% StateDataPhysBCFunct::() 41 0.02876 0.03246 0.03809 1.07% StateData::FillBoundary(geom) 41 0.02863 0.03232 0.03797 1.07% Castro::construct_new_source() 50 0.02957 0.03117 0.0328 0.92% Gravity::interpolate_monopole_grav() 21 0.02735 0.02899 0.02983 0.84% Castro::construct_new_gravity_source() 10 0.02294 0.02447 0.02591 0.73% Castro::post_init() 1 0.02358 0.02386 0.02409 0.68% Castro::finalize_do_advance() 10 0.01236 0.01739 0.02201 0.62% Amr::writePlotFile() 2 0.02089 0.02109 0.02133 0.60% Castro::post_timestep() 10 0.01498 0.01584 0.0165 0.46% Castro::check_for_nan() 20 0.009864 0.01187 0.01472 0.41% MultiFab::contains_nan() 20 0.00984 0.01185 0.01469 0.41% Castro::apply_source_to_state() 20 0.01204 0.01357 0.01433 0.40% FabArray::Saxpy() 20 0.01199 0.01352 0.01429 0.40% FabArray::setDomainBndry() 41 0.007135 0.01076 0.0138 0.39% VisMF::Write(FabArray) 2 0.009127 0.009665 0.012 0.34% Castro::Castro() 1 0.01033 0.01069 0.01157 0.33% Castro::construct_old_source() 50 0.008531 0.01023 0.01094 0.31% Castro::construct_old_gravity_source() 10 0.00846 0.01015 0.01086 0.31% Castro::computeNewDt() 9 0.009224 0.009238 0.00925 0.26% Castro::initMFs() 1 0.006216 0.006642 0.00783 0.22% Castro::enforce_min_density() 62 0.00728 0.007467 0.007723 0.22% AmrLevel::AmrLevel(dm) 1 0.005258 0.005424 0.005876 0.17% StateData::define() 4 0.00524 0.005406 0.00586 0.17% Castro::swap_state_time_levels() 10 0.003346 0.004449 0.00463 0.13% Castro::finalize_advance() 10 0.003079 0.003322 0.003544 0.10% Castro::buildMetrics() 1 0.001582 0.001663 0.001857 0.05% Castro::post_regrid() 1 0.001509 0.001596 0.001659 0.05% Amr::InitAmr() 1 0.00035 0.0003949 0.0004899 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.164e-05 0.0001046 0.0001398 0.00% DistributionMapping::LeastUsedCPUs() 1 7.133e-06 9.843e-05 0.0001322 0.00% Castro::enforce_consistent_e() 1 8.117e-05 8.982e-05 0.000108 0.00% FabArrayBase::getCPC() 41 6.555e-05 7.941e-05 0.0001013 0.00% Amr::writeSmallPlotFile() 1 3.033e-05 6.57e-05 8.5e-05 0.00% Castro::enforce_speed_limit() 62 2.59e-05 3.022e-05 3.26e-05 0.00% FabArrayBase::CPC::define() 2 2.169e-05 2.437e-05 2.909e-05 0.00% Amr::initSubcycle() 1 9.823e-06 1.251e-05 2.435e-05 0.00% Gravity::set_mass_offset() 10 9.599e-06 1.195e-05 1.399e-05 0.00% Gravity::swapTimeLevels() 10 8.227e-06 1.143e-05 1.353e-05 0.00% Castro::create_source_corrector() 10 7.252e-06 8.605e-06 1.04e-05 0.00% Castro::FluxRegCrseInit 10 6.205e-06 7.691e-06 9.031e-06 0.00% Castro::retry_advance_ctu() 10 6.054e-06 6.798e-06 7.625e-06 0.00% Castro::FluxRegFineAdd() 10 1.842e-06 2.342e-06 3.158e-06 0.00% DistributionMapping::Distribute() 1 8.61e-07 1.145e-06 1.611e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.02-35-gf1ef81e6c4dc) finalized