Initializing AMReX (24.03-4-g5961a48ab04c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-4-g5961a48ab04c) initialized Starting run at 06:39:12 UTC on 2024-03-08. Successfully read inputs file ... Castro git describe: 24.02-27-g465a83f5a AMReX git describe: 24.03-4-g5961a48ab Microphysics git describe: 24.03-1-gce331bc8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013536827 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358306055 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353432678 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330633747 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331830671 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.331183691 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.362023778 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319493013 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335338743 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311552996 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311423726 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007498237 seconds Ending run at 06:39:15 UTC on 2024-03-08. Run time = 3.542182298 Run time without initialization = 3.358226165 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3375 2.3758 2.4367 68.79% Gravity::make_radial_gravity() 21 0.2907 0.3017 0.3189 9.00% check_for_negative_density() 10 0.03759 0.1046 0.1443 4.07% Castro::initData() 1 0.04931 0.08731 0.1206 3.41% amrex::Copy() 193 0.06505 0.07947 0.09667 2.73% Castro::estTimeStep() 21 0.0225 0.06077 0.09476 2.68% FabArray::ParallelCopy_finish() 41 0.03666 0.05679 0.09382 2.65% FabArray::setVal() 143 0.0634 0.07152 0.07871 2.22% Castro::reset_internal_energy(Fab) 1008 0.04657 0.04773 0.04995 1.41% Castro::normalize_species() 62 0.04142 0.04223 0.04282 1.21% FabArray::ParallelCopy_nowait() 41 0.03403 0.04013 0.04188 1.18% StateData::FillBoundary(geom) 41 0.02881 0.03147 0.03514 0.99% FillPatchIterator::Initialize 41 0.0272 0.03171 0.03465 0.98% Gravity::interpolate_monopole_grav() 21 0.02776 0.02963 0.03213 0.91% Castro::construct_new_gravity_source() 10 0.02087 0.02334 0.02556 0.72% Castro::computeTemp() 63 0.01923 0.0198 0.02056 0.58% Castro::initialize_do_advance() 10 0.0119 0.01705 0.01847 0.52% Castro::initialize_advance() 10 0.008813 0.01222 0.01549 0.44% FabArray::Saxpy() 20 0.01029 0.0125 0.01373 0.39% VisMF::Write(FabArray) 2 0.008973 0.009562 0.01226 0.35% MultiFab::contains_nan() 20 0.009808 0.01085 0.01222 0.34% FabArray::setDomainBndry() 41 0.006639 0.009257 0.01195 0.34% Castro::construct_old_gravity_source() 10 0.006352 0.00923 0.01001 0.28% Amr::writePlotFile() 2 0.006209 0.008905 0.009701 0.27% Castro::initMFs() 1 0.006431 0.006839 0.008041 0.23% Castro::enforce_min_density() 62 0.007118 0.007364 0.007687 0.22% Castro::construct_new_source() 50 0.005682 0.006445 0.006804 0.19% StateData::define() 4 0.005271 0.005469 0.005994 0.17% Castro::swap_state_time_levels() 10 0.003189 0.004284 0.004924 0.14% main() 1 0.004017 0.004421 0.00485 0.14% Gravity::get_new_grav_vector() 11 0.002847 0.003487 0.003869 0.11% Gravity::get_old_grav_vector() 10 0.00142 0.001905 0.002415 0.07% Amr::coarseTimeStep() 10 0.0009703 0.001555 0.002135 0.06% Castro::buildMetrics() 1 0.001517 0.001571 0.001722 0.05% Castro::finalize_do_advance() 10 0.0004981 0.001154 0.001484 0.04% AmrLevel::FillPatch() 41 0.0008023 0.00095 0.001212 0.03% Amr::InitAmr() 1 0.0003463 0.0003831 0.0005458 0.02% Amr::timeStep() 10 0.0001638 0.0002118 0.0003501 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002757 0.000294 0.0003103 0.01% DistributionMapping::LeastUsedCPUs() 1 7.105e-06 0.0001765 0.0002072 0.01% Castro::clean_state() 62 0.0001265 0.0001432 0.000173 0.00% Castro::do_advance_ctu() 10 0.0001183 0.0001446 0.0001615 0.00% StateDataPhysBCFunct::() 41 8.651e-05 0.0001035 0.0001331 0.00% Castro::finalize_advance() 10 7.72e-05 9.606e-05 0.0001269 0.00% FillPatchIterator::FillFromLevel0() 41 9.647e-05 0.0001052 0.0001222 0.00% Castro::do_old_sources() 10 6.682e-05 8.591e-05 0.0001067 0.00% Castro::construct_old_source() 50 5.4e-05 7.067e-05 0.0001037 0.00% Castro::enforce_consistent_e() 1 7.781e-05 8.464e-05 9.644e-05 0.00% Castro::do_new_sources() 10 5.017e-05 6.563e-05 9.241e-05 0.00% FabArray::ParallelCopy() 41 6.826e-05 7.642e-05 8.658e-05 0.00% Castro::Castro() 1 5.945e-05 7.216e-05 8.569e-05 0.00% FillPatchSingleLevel 41 5.912e-05 6.587e-05 7.671e-05 0.00% Amr::FinalizeInit() 1 3.973e-06 1.328e-05 7.319e-05 0.00% Amr::writeSmallPlotFile() 1 2.988e-05 5.383e-05 6.792e-05 0.00% FabArrayBase::getCPC() 41 3.707e-05 4.845e-05 5.848e-05 0.00% Castro::apply_source_to_state() 20 3.51e-05 4.447e-05 5.661e-05 0.00% Castro::advance() 10 3.393e-05 4.45e-05 5.62e-05 0.00% Castro::subcycle_advance_ctu() 10 3.935e-05 4.611e-05 5.438e-05 0.00% Castro::construct_new_gravity() 10 2.997e-05 3.567e-05 4.465e-05 0.00% Castro::construct_old_gravity() 10 2.99e-05 3.58e-05 4.216e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 2.825e-05 3.836e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.646e-05 3.761e-05 0.00% Amr::defBaseLevel() 1 1.726e-05 2.487e-05 3.543e-05 0.00% Castro::expand_state() 10 1.914e-05 2.458e-05 2.813e-05 0.00% Castro::check_for_nan() 20 2.184e-05 2.35e-05 2.552e-05 0.00% Castro::post_init() 1 1.432e-05 1.694e-05 2.341e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.701e-05 1.909e-05 2.21e-05 0.00% Castro::post_timestep() 10 1.246e-05 1.612e-05 1.936e-05 0.00% Gravity::set_mass_offset() 10 9.25e-06 1.109e-05 1.352e-05 0.00% Amr::initSubcycle() 1 9.917e-06 1.082e-05 1.227e-05 0.00% Gravity::swapTimeLevels() 10 7.916e-06 9.878e-06 1.222e-05 0.00% Castro::create_source_corrector() 10 7.701e-06 9.23e-06 1.217e-05 0.00% Castro::computeNewDt() 9 7.836e-06 8.517e-06 9.706e-06 0.00% Castro::FluxRegCrseInit 10 6.169e-06 7.862e-06 9.468e-06 0.00% Castro::retry_advance_ctu() 10 6.648e-06 7.468e-06 8.512e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.606e-06 4.889e-06 6.568e-06 0.00% Amr::init() 1 1.874e-06 3.367e-06 6.417e-06 0.00% Amr::InitializeInit() 1 2.078e-06 2.752e-06 5.549e-06 0.00% Castro::computeInitialDt() 2 3.139e-06 3.968e-06 4.983e-06 0.00% Castro::post_regrid() 1 2.148e-06 3.35e-06 4.791e-06 0.00% Castro::FluxRegFineAdd() 10 2.117e-06 2.441e-06 2.649e-06 0.00% Amr::initialInit() 1 1.337e-06 1.704e-06 2.05e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.042e-06 1.194e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.46% Amr::timeStep() 10 3.333 3.334 3.335 94.14% Castro::advance() 10 3.318 3.318 3.318 93.68% Castro::subcycle_advance_ctu() 10 3.236 3.24 3.249 91.72% Castro::do_advance_ctu() 10 3.236 3.24 3.249 91.71% Castro::construct_ctu_hydro_source() 10 2.495 2.501 2.505 70.72% Gravity::make_radial_gravity() 21 0.3067 0.3177 0.333 9.40% AmrLevel::FillPatch() 41 0.1771 0.1996 0.2144 6.05% Gravity::get_new_grav_vector() 11 0.2068 0.2087 0.2101 5.93% Castro::construct_old_gravity() 10 0.1882 0.1952 0.2086 5.89% Gravity::get_old_grav_vector() 10 0.1876 0.1946 0.208 5.87% FillPatchIterator::Initialize 41 0.1492 0.1698 0.1911 5.40% Castro::construct_new_gravity() 10 0.1827 0.1838 0.1847 5.21% Amr::init() 1 0.1832 0.1834 0.1834 5.18% Amr::initialInit() 1 0.1695 0.1698 0.1701 4.80% Castro::initialize_do_advance() 10 0.1547 0.1605 0.1675 4.73% FillPatchIterator::FillFromLevel0() 41 0.1136 0.1288 0.1572 4.44% FillPatchSingleLevel 41 0.1135 0.1287 0.1571 4.43% check_for_negative_density() 10 0.03759 0.1046 0.1443 4.07% Amr::InitializeInit() 1 0.06943 0.1079 0.1411 3.98% Amr::defBaseLevel() 1 0.06943 0.1079 0.1411 3.98% FabArray::ParallelCopy() 41 0.07831 0.09706 0.128 3.61% Castro::initData() 1 0.05342 0.09131 0.1249 3.53% Castro::clean_state() 62 0.114 0.1167 0.1205 3.40% Castro::expand_state() 10 0.09815 0.106 0.1128 3.18% Castro::do_old_sources() 10 0.09001 0.09973 0.1056 2.98% Amr::FinalizeInit() 1 0.02843 0.06185 0.1001 2.83% amrex::Copy() 193 0.06505 0.07947 0.09667 2.73% Castro::estTimeStep() 21 0.0225 0.06077 0.09476 2.68% FabArray::ParallelCopy_finish() 41 0.03666 0.05679 0.09382 2.65% Castro::initialize_advance() 10 0.06518 0.07467 0.07878 2.22% FabArray::setVal() 143 0.0634 0.07152 0.07871 2.22% Castro::computeInitialDt() 2 0.002367 0.03546 0.07379 2.08% Castro::computeTemp() 63 0.06611 0.06783 0.07079 2.00% Castro::do_new_sources() 10 0.05996 0.06313 0.06827 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04688 0.04803 0.05024 1.42% Castro::reset_internal_energy(Fab) 1008 0.04657 0.04773 0.04995 1.41% Castro::normalize_species() 62 0.04142 0.04223 0.04282 1.21% FabArray::ParallelCopy_nowait() 41 0.03411 0.0402 0.04195 1.18% StateDataPhysBCFunct::() 41 0.02889 0.03157 0.03523 0.99% StateData::FillBoundary(geom) 41 0.02881 0.03147 0.03514 0.99% Castro::construct_new_source() 50 0.02656 0.02978 0.03223 0.91% Gravity::interpolate_monopole_grav() 21 0.02776 0.02963 0.03213 0.91% Castro::post_init() 1 0.02572 0.02606 0.0264 0.75% Castro::construct_new_gravity_source() 10 0.02087 0.02334 0.02556 0.72% Amr::writePlotFile() 2 0.02086 0.02119 0.02152 0.61% Castro::finalize_do_advance() 10 0.01203 0.01744 0.02097 0.59% Castro::post_timestep() 10 0.01551 0.01587 0.01623 0.46% Castro::apply_source_to_state() 20 0.01034 0.01255 0.01378 0.39% FabArray::Saxpy() 20 0.01029 0.0125 0.01373 0.39% VisMF::Write(FabArray) 2 0.008973 0.009562 0.01226 0.35% Castro::check_for_nan() 20 0.009829 0.01087 0.01224 0.35% MultiFab::contains_nan() 20 0.009808 0.01085 0.01222 0.34% FabArray::setDomainBndry() 41 0.006639 0.009257 0.01195 0.34% Castro::Castro() 1 0.01059 0.01092 0.01174 0.33% Castro::construct_old_source() 50 0.006413 0.0093 0.01009 0.28% Castro::construct_old_gravity_source() 10 0.006352 0.00923 0.01001 0.28% Castro::computeNewDt() 9 0.009024 0.00903 0.009034 0.26% Castro::initMFs() 1 0.006431 0.006839 0.008041 0.23% Castro::enforce_min_density() 62 0.007118 0.007364 0.007687 0.22% AmrLevel::AmrLevel(dm) 1 0.00529 0.005488 0.006016 0.17% StateData::define() 4 0.005271 0.005469 0.005994 0.17% Castro::swap_state_time_levels() 10 0.003189 0.004284 0.004924 0.14% Castro::finalize_advance() 10 0.0031 0.003321 0.003531 0.10% Castro::buildMetrics() 1 0.001644 0.00171 0.001886 0.05% Castro::post_regrid() 1 0.001554 0.001634 0.001861 0.05% Amr::InitAmr() 1 0.0003562 0.0003939 0.0005581 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.222e-05 0.0001825 0.0002149 0.01% DistributionMapping::LeastUsedCPUs() 1 7.105e-06 0.0001765 0.0002072 0.01% Castro::enforce_consistent_e() 1 7.781e-05 8.464e-05 9.644e-05 0.00% FabArrayBase::getCPC() 41 5.948e-05 7.491e-05 8.658e-05 0.00% Amr::writeSmallPlotFile() 1 2.988e-05 5.383e-05 6.792e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 2.825e-05 3.836e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.646e-05 3.761e-05 0.00% Gravity::set_mass_offset() 10 9.25e-06 1.109e-05 1.352e-05 0.00% Amr::initSubcycle() 1 9.917e-06 1.082e-05 1.227e-05 0.00% Gravity::swapTimeLevels() 10 7.916e-06 9.878e-06 1.222e-05 0.00% Castro::create_source_corrector() 10 7.701e-06 9.23e-06 1.217e-05 0.00% Castro::FluxRegCrseInit 10 6.169e-06 7.862e-06 9.468e-06 0.00% Castro::retry_advance_ctu() 10 6.648e-06 7.468e-06 8.512e-06 0.00% Castro::FluxRegFineAdd() 10 2.117e-06 2.441e-06 2.649e-06 0.00% DistributionMapping::Distribute() 1 8.78e-07 1.042e-06 1.194e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-4-g5961a48ab04c) finalized