Initializing AMReX (24.03-5-gba95d4cd8758)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-5-gba95d4cd8758) initialized Starting run at 05:41:10 UTC on 2024-03-11. Successfully read inputs file ... Castro git describe: 24.03-3-gfbd880fa0 AMReX git describe: 24.03-5-gba95d4cd8 Microphysics git describe: 24.03-6-g95cb860c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016728997 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363706892 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.358088058 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328667964 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373887623 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338044805 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31190968 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312419877 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313054863 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314166841 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314619411 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.07922658 seconds Ending run at 05:41:14 UTC on 2024-03-11. Run time = 3.666723488 Run time without initialization = 3.412846814 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.666 ... 3.666 ... 3.667 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3438 2.3827 2.4319 66.32% Gravity::make_radial_gravity() 21 0.3022 0.3086 0.318 8.67% Castro::initData() 1 0.0495 0.1037 0.1686 4.60% Castro::estTimeStep() 21 0.02514 0.1046 0.1581 4.31% check_for_negative_density() 10 0.04319 0.09281 0.1317 3.59% Amr::writePlotFile() 2 0.08048 0.08465 0.08652 2.36% FabArray::ParallelCopy_finish() 41 0.03659 0.05684 0.08535 2.33% amrex::Copy() 193 0.06489 0.07479 0.08259 2.25% FabArray::setVal() 143 0.05654 0.0657 0.07709 2.10% Castro::reset_internal_energy(Fab) 1008 0.04329 0.04746 0.05086 1.39% Castro::normalize_species() 62 0.04105 0.04266 0.04404 1.20% FabArray::ParallelCopy_nowait() 41 0.03437 0.03895 0.04055 1.11% FillPatchIterator::Initialize 41 0.02859 0.03208 0.03605 0.98% StateData::FillBoundary(geom) 41 0.02884 0.03056 0.03224 0.88% Gravity::interpolate_monopole_grav() 21 0.02775 0.02992 0.03204 0.87% Castro::construct_new_gravity_source() 10 0.02182 0.02383 0.02697 0.74% Castro::computeTemp() 63 0.01705 0.01927 0.02079 0.57% Castro::initialize_do_advance() 10 0.01354 0.01702 0.02039 0.56% VisMF::Write(FabArray) 2 0.008584 0.009467 0.01327 0.36% FabArray::Saxpy() 20 0.01011 0.01179 0.01248 0.34% FabArray::setDomainBndry() 41 0.006829 0.009939 0.01233 0.34% Castro::initialize_advance() 10 0.005567 0.00983 0.01217 0.33% MultiFab::contains_nan() 20 0.009381 0.01025 0.01136 0.31% Castro::initMFs() 1 0.00637 0.007674 0.009698 0.26% Castro::construct_old_gravity_source() 10 0.006631 0.008861 0.009321 0.25% StateData::define() 4 0.005247 0.006336 0.008071 0.22% Castro::enforce_min_density() 62 0.00701 0.007307 0.007772 0.21% Castro::construct_new_source() 50 0.005332 0.005895 0.006143 0.17% Castro::swap_state_time_levels() 10 0.00273 0.003974 0.004537 0.12% Amr::coarseTimeStep() 10 0.00157 0.002873 0.004175 0.11% Gravity::get_new_grav_vector() 11 0.003222 0.003677 0.004158 0.11% main() 1 0.003544 0.003783 0.004133 0.11% Gravity::get_old_grav_vector() 10 0.001683 0.001994 0.002361 0.06% Castro::buildMetrics() 1 0.001472 0.00178 0.00228 0.06% Castro::finalize_do_advance() 10 0.0004238 0.0009042 0.001107 0.03% AmrLevel::FillPatch() 41 0.0007433 0.0008601 0.001049 0.03% Amr::InitAmr() 1 0.0003659 0.0004583 0.0006498 0.02% DistributionMapping::LeastUsedCPUs() 1 3.182e-05 0.0002491 0.0003777 0.01% Amr::timeStep() 10 0.0001658 0.0002009 0.0003699 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000272 0.0002872 0.0003071 0.01% Castro::clean_state() 62 0.0001385 0.0001654 0.0002138 0.01% Castro::do_advance_ctu() 10 0.0001424 0.0001581 0.0001771 0.00% Castro::enforce_consistent_e() 1 7.825e-05 0.0001025 0.0001495 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001044 0.0001213 0.0001395 0.00% StateDataPhysBCFunct::() 41 9.718e-05 0.0001109 0.0001245 0.00% Castro::finalize_advance() 10 9.119e-05 0.0001088 0.0001207 0.00% Castro::Castro() 1 7.132e-05 8.455e-05 9.875e-05 0.00% Castro::do_old_sources() 10 8.952e-05 9.366e-05 9.861e-05 0.00% Castro::construct_old_source() 50 5.799e-05 7.786e-05 9.182e-05 0.00% FabArray::ParallelCopy() 41 7.314e-05 8.235e-05 8.967e-05 0.00% FillPatchSingleLevel 41 6.751e-05 7.278e-05 8.577e-05 0.00% FabArrayBase::getCPC() 41 5.908e-05 6.53e-05 7.807e-05 0.00% Amr::FinalizeInit() 1 3.847e-06 1.507e-05 7.313e-05 0.00% Castro::do_new_sources() 10 5.74e-05 6.367e-05 7.142e-05 0.00% Castro::subcycle_advance_ctu() 10 4.288e-05 5.034e-05 6.134e-05 0.00% Amr::writeSmallPlotFile() 1 3.188e-05 4.362e-05 5.576e-05 0.00% Castro::advance() 10 4.108e-05 4.755e-05 5.123e-05 0.00% Castro::apply_source_to_state() 20 4.052e-05 4.528e-05 5.084e-05 0.00% Castro::construct_new_gravity() 10 3.516e-05 4.14e-05 4.776e-05 0.00% Castro::construct_old_gravity() 10 3.585e-05 3.99e-05 4.629e-05 0.00% Amr::defBaseLevel() 1 3.623e-05 3.892e-05 4.458e-05 0.00% FabArrayBase::CPC::define() 2 2.693e-05 3.055e-05 3.806e-05 0.00% Castro::enforce_speed_limit() 62 2.121e-05 2.645e-05 3.231e-05 0.00% Castro::expand_state() 10 1.956e-05 2.472e-05 3.053e-05 0.00% Castro::check_for_nan() 20 1.994e-05 2.307e-05 2.512e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.338e-05 1.693e-05 2.193e-05 0.00% Castro::post_init() 1 1.452e-05 1.718e-05 2.149e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.279e-05 1.771e-05 0.00% Castro::post_timestep() 10 1.348e-05 1.453e-05 1.586e-05 0.00% Castro::computeInitialDt() 2 3.2e-06 5.15e-06 1.49e-05 0.00% Gravity::swapTimeLevels() 10 8.04e-06 1.065e-05 1.318e-05 0.00% Gravity::set_mass_offset() 10 1.044e-05 1.157e-05 1.258e-05 0.00% Castro::computeNewDt() 9 8.142e-06 9.391e-06 1.132e-05 0.00% Castro::create_source_corrector() 10 6.967e-06 8.273e-06 9.739e-06 0.00% Castro::FluxRegCrseInit 10 6.839e-06 7.796e-06 9.632e-06 0.00% Castro::retry_advance_ctu() 10 7.101e-06 7.89e-06 8.634e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.67e-06 4.792e-06 5.956e-06 0.00% Amr::InitializeInit() 1 2.112e-06 2.673e-06 5.064e-06 0.00% Castro::post_regrid() 1 2.446e-06 3.512e-06 4.486e-06 0.00% Castro::FluxRegFineAdd() 10 1.756e-06 2.352e-06 2.937e-06 0.00% Amr::init() 1 1.912e-06 2.383e-06 2.849e-06 0.00% Amr::initialInit() 1 1.475e-06 1.777e-06 2.36e-06 0.00% DistributionMapping::Distribute() 1 1.039e-06 1.328e-06 1.623e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.666 3.666 3.667 100.00% Amr::coarseTimeStep() 10 3.33 3.33 3.33 90.80% Amr::timeStep() 10 3.315 3.316 3.317 90.47% Castro::advance() 10 3.3 3.3 3.301 90.02% Castro::subcycle_advance_ctu() 10 3.219 3.229 3.239 88.32% Castro::do_advance_ctu() 10 3.219 3.229 3.239 88.32% Castro::construct_ctu_hydro_source() 10 2.493 2.497 2.501 68.20% Gravity::make_radial_gravity() 21 0.3182 0.3241 0.3322 9.06% Amr::init() 1 0.253 0.2533 0.2534 6.91% Amr::initialInit() 1 0.2349 0.2361 0.2368 6.46% Gravity::get_new_grav_vector() 11 0.2253 0.2285 0.2313 6.31% AmrLevel::FillPatch() 41 0.1859 0.1994 0.2119 5.78% Amr::InitializeInit() 1 0.06791 0.1259 0.1955 5.33% Amr::defBaseLevel() 1 0.06791 0.1259 0.1955 5.33% Castro::construct_new_gravity() 10 0.1899 0.1929 0.1948 5.31% Castro::construct_old_gravity() 10 0.1781 0.182 0.1883 5.14% Gravity::get_old_grav_vector() 10 0.1774 0.1813 0.1878 5.12% FillPatchIterator::Initialize 41 0.1533 0.1688 0.1844 5.03% Castro::initData() 1 0.05298 0.108 0.1739 4.74% Castro::initialize_do_advance() 10 0.1566 0.1665 0.1728 4.71% Amr::FinalizeInit() 1 0.04134 0.1102 0.1684 4.59% Castro::estTimeStep() 21 0.02514 0.1046 0.1581 4.31% FillPatchIterator::FillFromLevel0() 41 0.1079 0.1268 0.149 4.06% FillPatchSingleLevel 41 0.1078 0.1267 0.1489 4.06% check_for_negative_density() 10 0.04319 0.09281 0.1317 3.59% Castro::computeInitialDt() 2 0.003255 0.07301 0.131 3.57% Castro::clean_state() 62 0.1089 0.1161 0.1215 3.31% Castro::expand_state() 10 0.1012 0.1137 0.1209 3.30% FabArray::ParallelCopy() 41 0.07633 0.09596 0.1199 3.27% Amr::writePlotFile() 2 0.09553 0.09643 0.09773 2.67% Castro::do_old_sources() 10 0.08651 0.08833 0.09167 2.50% FabArray::ParallelCopy_finish() 41 0.03659 0.05684 0.08535 2.33% amrex::Copy() 193 0.06489 0.07479 0.08259 2.25% Castro::initialize_advance() 10 0.05753 0.06796 0.07787 2.12% FabArray::setVal() 143 0.05654 0.0657 0.07709 2.10% Castro::do_new_sources() 10 0.05856 0.0637 0.07281 1.99% Castro::computeTemp() 63 0.06062 0.06702 0.07195 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04357 0.04775 0.05116 1.40% Castro::reset_internal_energy(Fab) 1008 0.04329 0.04746 0.05086 1.39% Castro::normalize_species() 62 0.04105 0.04266 0.04404 1.20% FabArray::ParallelCopy_nowait() 41 0.03447 0.03904 0.04064 1.11% Castro::post_init() 1 0.03534 0.03656 0.0372 1.01% Castro::construct_new_source() 50 0.02715 0.02973 0.03291 0.90% StateDataPhysBCFunct::() 41 0.02894 0.03067 0.03235 0.88% StateData::FillBoundary(geom) 41 0.02884 0.03056 0.03224 0.88% Gravity::interpolate_monopole_grav() 21 0.02775 0.02992 0.03204 0.87% Castro::finalize_do_advance() 10 0.01363 0.02315 0.0294 0.80% Castro::construct_new_gravity_source() 10 0.02182 0.02383 0.02697 0.74% Castro::post_timestep() 10 0.01494 0.01568 0.01652 0.45% Castro::Castro() 1 0.009385 0.01127 0.0137 0.37% VisMF::Write(FabArray) 2 0.008584 0.009467 0.01327 0.36% Castro::apply_source_to_state() 20 0.01016 0.01183 0.01253 0.34% FabArray::Saxpy() 20 0.01011 0.01179 0.01248 0.34% FabArray::setDomainBndry() 41 0.006829 0.009939 0.01233 0.34% Castro::check_for_nan() 20 0.009404 0.01027 0.01139 0.31% MultiFab::contains_nan() 20 0.009381 0.01025 0.01136 0.31% Castro::initMFs() 1 0.00637 0.007674 0.009698 0.26% Castro::computeNewDt() 9 0.009219 0.009361 0.009507 0.26% Castro::construct_old_source() 50 0.006689 0.008939 0.009395 0.26% Castro::construct_old_gravity_source() 10 0.006631 0.008861 0.009321 0.25% AmrLevel::AmrLevel(dm) 1 0.005262 0.006353 0.008093 0.22% StateData::define() 4 0.005247 0.006336 0.008071 0.22% Castro::enforce_min_density() 62 0.00701 0.007307 0.007772 0.21% Castro::swap_state_time_levels() 10 0.00273 0.003974 0.004537 0.12% Castro::finalize_advance() 10 0.002972 0.003423 0.004174 0.11% Castro::post_regrid() 1 0.001556 0.001948 0.002827 0.08% Castro::buildMetrics() 1 0.001584 0.001928 0.002482 0.07% Amr::InitAmr() 1 0.0003768 0.0004711 0.0006675 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.886e-05 0.0002552 0.0003851 0.01% DistributionMapping::LeastUsedCPUs() 1 3.182e-05 0.0002491 0.0003777 0.01% Castro::enforce_consistent_e() 1 7.825e-05 0.0001025 0.0001495 0.00% FabArrayBase::getCPC() 41 8.749e-05 9.585e-05 0.0001089 0.00% Amr::writeSmallPlotFile() 1 3.188e-05 4.362e-05 5.576e-05 0.00% FabArrayBase::CPC::define() 2 2.693e-05 3.055e-05 3.806e-05 0.00% Castro::enforce_speed_limit() 62 2.121e-05 2.645e-05 3.231e-05 0.00% Amr::initSubcycle() 1 1.016e-05 1.279e-05 1.771e-05 0.00% Gravity::swapTimeLevels() 10 8.04e-06 1.065e-05 1.318e-05 0.00% Gravity::set_mass_offset() 10 1.044e-05 1.157e-05 1.258e-05 0.00% Castro::create_source_corrector() 10 6.967e-06 8.273e-06 9.739e-06 0.00% Castro::FluxRegCrseInit 10 6.839e-06 7.796e-06 9.632e-06 0.00% Castro::retry_advance_ctu() 10 7.101e-06 7.89e-06 8.634e-06 0.00% Castro::FluxRegFineAdd() 10 1.756e-06 2.352e-06 2.937e-06 0.00% DistributionMapping::Distribute() 1 1.039e-06 1.328e-06 1.623e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 58 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-5-gba95d4cd8758) finalized