Initializing AMReX (24.03-7-g155f1f4c3f4f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-7-g155f1f4c3f4f) initialized Starting run at 05:38:44 UTC on 2024-03-12. Successfully read inputs file ... Castro git describe: 24.03-3-gfbd880fa0 AMReX git describe: 24.03-7-g155f1f4c3 Microphysics git describe: 24.03-6-g95cb860c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016134008 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368145499 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361824962 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334792653 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.368065494 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.366294133 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.315593578 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312274272 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312897388 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31182463 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31463299 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007824215 seconds Ending run at 05:38:47 UTC on 2024-03-12. Run time = 3.576917976 Run time without initialization = 3.379071259 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.576 ... 3.577 ... 3.577 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3553 2.4015 2.4423 68.28% Gravity::make_radial_gravity() 21 0.2947 0.3045 0.3148 8.80% check_for_negative_density() 10 0.04229 0.08596 0.1342 3.75% Castro::initData() 1 0.06108 0.09628 0.1303 3.64% amrex::Copy() 193 0.07511 0.08158 0.102 2.85% Castro::estTimeStep() 21 0.02298 0.06214 0.09251 2.59% FabArray::ParallelCopy_finish() 41 0.05045 0.06296 0.0758 2.12% FabArray::setVal() 143 0.06388 0.06839 0.07493 2.09% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04765 0.04929 1.38% Castro::normalize_species() 62 0.04152 0.04265 0.04326 1.21% FabArray::ParallelCopy_nowait() 41 0.03779 0.04074 0.04252 1.19% FillPatchIterator::Initialize 41 0.02867 0.03312 0.03542 0.99% StateData::FillBoundary(geom) 41 0.02862 0.03142 0.0331 0.93% Gravity::interpolate_monopole_grav() 21 0.02774 0.02943 0.03189 0.89% Castro::construct_new_gravity_source() 10 0.02227 0.02379 0.02546 0.71% Castro::computeTemp() 63 0.01836 0.01958 0.02043 0.57% Castro::initialize_do_advance() 10 0.01456 0.01737 0.01941 0.54% FabArray::setDomainBndry() 41 0.007389 0.01109 0.01377 0.38% Castro::initialize_advance() 10 0.009629 0.01132 0.01336 0.37% FabArray::Saxpy() 20 0.01162 0.01246 0.01307 0.37% VisMF::Write(FabArray) 2 0.009085 0.009695 0.01264 0.35% Amr::writePlotFile() 2 0.00867 0.01119 0.01214 0.34% MultiFab::contains_nan() 20 0.01035 0.01102 0.01176 0.33% Castro::initMFs() 1 0.006393 0.008092 0.01098 0.31% Castro::construct_old_gravity_source() 10 0.008274 0.009384 0.009976 0.28% StateData::define() 4 0.00536 0.006741 0.009379 0.26% Castro::enforce_min_density() 62 0.007058 0.007295 0.007664 0.21% Castro::construct_new_source() 50 0.00607 0.006201 0.006363 0.18% Gravity::get_new_grav_vector() 11 0.003448 0.003927 0.005342 0.15% Castro::swap_state_time_levels() 10 0.002914 0.004178 0.004702 0.13% main() 1 0.003233 0.003717 0.004163 0.12% Amr::coarseTimeStep() 10 0.001033 0.001962 0.002752 0.08% Castro::buildMetrics() 1 0.001473 0.001882 0.002594 0.07% Gravity::get_old_grav_vector() 10 0.001549 0.00199 0.002412 0.07% Castro::finalize_do_advance() 10 0.001098 0.001154 0.001203 0.03% AmrLevel::FillPatch() 41 0.0007984 0.0009048 0.001021 0.03% Amr::InitAmr() 1 0.0003476 0.0004887 0.0007598 0.02% DistributionMapping::LeastUsedCPUs() 1 4.117e-05 0.000334 0.0004725 0.01% Amr::timeStep() 10 0.0001529 0.0002099 0.0004071 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002789 0.0002955 0.0003277 0.01% Castro::do_advance_ctu() 10 0.0001211 0.0001484 0.0001806 0.01% Castro::clean_state() 62 0.0001545 0.0001654 0.0001777 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001071 0.0001155 0.0001298 0.00% StateDataPhysBCFunct::() 41 0.0001014 0.0001119 0.0001294 0.00% Castro::enforce_consistent_e() 1 8.043e-05 9.469e-05 0.0001267 0.00% Castro::finalize_advance() 10 9.578e-05 0.0001098 0.000121 0.00% Castro::Castro() 1 6.658e-05 8.553e-05 0.0001108 0.00% Castro::do_old_sources() 10 7.711e-05 9.364e-05 0.0001054 0.00% Amr::FinalizeInit() 1 4.19e-06 1.747e-05 9.879e-05 0.00% Castro::construct_old_source() 50 5.447e-05 7.651e-05 9.857e-05 0.00% FabArray::ParallelCopy() 41 7.58e-05 8.414e-05 9.532e-05 0.00% FillPatchSingleLevel 41 6.538e-05 7.317e-05 8.851e-05 0.00% FabArrayBase::getCPC() 41 5.722e-05 6.293e-05 7.131e-05 0.00% Castro::do_new_sources() 10 5.752e-05 6.543e-05 6.859e-05 0.00% Amr::defBaseLevel() 1 3.542e-05 4.456e-05 6.049e-05 0.00% Amr::writeSmallPlotFile() 1 3.062e-05 4.601e-05 5.921e-05 0.00% Castro::apply_source_to_state() 20 4.084e-05 4.665e-05 5.798e-05 0.00% Castro::subcycle_advance_ctu() 10 3.869e-05 4.63e-05 5.604e-05 0.00% Castro::advance() 10 4.062e-05 4.463e-05 4.738e-05 0.00% Castro::construct_new_gravity() 10 3.333e-05 3.899e-05 4.36e-05 0.00% Castro::construct_old_gravity() 10 3.218e-05 3.618e-05 4.26e-05 0.00% FabArrayBase::CPC::define() 2 2.809e-05 3.149e-05 4.054e-05 0.00% Castro::enforce_speed_limit() 62 2.283e-05 2.834e-05 3.912e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.425e-05 2.083e-05 2.899e-05 0.00% Castro::expand_state() 10 1.988e-05 2.376e-05 2.716e-05 0.00% Castro::check_for_nan() 20 2.048e-05 2.277e-05 2.642e-05 0.00% Castro::post_init() 1 1.62e-05 1.751e-05 2.149e-05 0.00% Amr::initSubcycle() 1 9.632e-06 1.293e-05 2.04e-05 0.00% Castro::post_timestep() 10 1.132e-05 1.364e-05 1.694e-05 0.00% Gravity::swapTimeLevels() 10 9.477e-06 1.109e-05 1.426e-05 0.00% Gravity::set_mass_offset() 10 1.086e-05 1.196e-05 1.302e-05 0.00% Castro::computeNewDt() 9 7.967e-06 8.789e-06 1.041e-05 0.00% Castro::create_source_corrector() 10 7.786e-06 8.761e-06 1.032e-05 0.00% Castro::retry_advance_ctu() 10 6.785e-06 7.737e-06 9.22e-06 0.00% Castro::FluxRegCrseInit 10 6.591e-06 7.549e-06 9.008e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.161e-06 5.273e-06 8.668e-06 0.00% Castro::FluxRegFineAdd() 10 2.046e-06 2.913e-06 7.245e-06 0.00% Amr::InitializeInit() 1 1.995e-06 2.755e-06 5.728e-06 0.00% Castro::post_regrid() 1 2.496e-06 3.568e-06 4.741e-06 0.00% Castro::computeInitialDt() 2 3.031e-06 3.732e-06 4.439e-06 0.00% Amr::init() 1 1.728e-06 2.247e-06 2.788e-06 0.00% Amr::initialInit() 1 1.532e-06 1.93e-06 2.648e-06 0.00% DistributionMapping::Distribute() 1 1.111e-06 1.399e-06 1.736e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.576 3.577 3.577 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 94.13% Amr::timeStep() 10 3.354 3.355 3.356 93.82% Castro::advance() 10 3.338 3.339 3.339 93.36% Castro::subcycle_advance_ctu() 10 3.26 3.264 3.266 91.32% Castro::do_advance_ctu() 10 3.26 3.264 3.266 91.32% Castro::construct_ctu_hydro_source() 10 2.507 2.51 2.512 70.24% Gravity::make_radial_gravity() 21 0.3149 0.3219 0.3305 9.24% AmrLevel::FillPatch() 41 0.2022 0.2123 0.226 6.32% Gravity::get_new_grav_vector() 11 0.2134 0.2153 0.2167 6.06% Castro::construct_old_gravity() 10 0.1909 0.1956 0.2034 5.69% Gravity::get_old_grav_vector() 10 0.1903 0.195 0.2029 5.67% Amr::init() 1 0.1969 0.1972 0.1973 5.52% FillPatchIterator::Initialize 41 0.1673 0.1798 0.1918 5.36% Castro::construct_new_gravity() 10 0.1887 0.1896 0.1909 5.34% Amr::initialInit() 1 0.1808 0.1813 0.182 5.09% Castro::initialize_do_advance() 10 0.1602 0.1683 0.1758 4.92% Amr::InitializeInit() 1 0.08402 0.1191 0.1517 4.24% Amr::defBaseLevel() 1 0.08401 0.1191 0.1517 4.24% FillPatchIterator::FillFromLevel0() 41 0.1228 0.1356 0.1433 4.01% FillPatchSingleLevel 41 0.1227 0.1355 0.1432 4.00% check_for_negative_density() 10 0.04229 0.08596 0.1342 3.75% Castro::initData() 1 0.06586 0.1002 0.1341 3.75% Castro::expand_state() 10 0.1042 0.1143 0.1226 3.43% Castro::clean_state() 62 0.1127 0.1167 0.1193 3.34% FabArray::ParallelCopy() 41 0.09048 0.1039 0.1138 3.18% Castro::do_old_sources() 10 0.09344 0.1002 0.1033 2.89% amrex::Copy() 193 0.07511 0.08158 0.102 2.85% Amr::FinalizeInit() 1 0.02927 0.06222 0.09676 2.71% Castro::estTimeStep() 21 0.02298 0.06214 0.09251 2.59% FabArray::ParallelCopy_finish() 41 0.05045 0.06296 0.0758 2.12% Castro::initialize_advance() 10 0.06877 0.07084 0.075 2.10% FabArray::setVal() 143 0.06388 0.06839 0.07493 2.09% Castro::do_new_sources() 10 0.06041 0.06483 0.07082 1.98% Castro::computeTemp() 63 0.06445 0.06753 0.07001 1.96% Castro::computeInitialDt() 2 0.002427 0.03492 0.06993 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04607 0.04795 0.04959 1.39% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04765 0.04929 1.38% Castro::normalize_species() 62 0.04152 0.04265 0.04326 1.21% FabArray::ParallelCopy_nowait() 41 0.03789 0.04083 0.04261 1.19% StateDataPhysBCFunct::() 41 0.02873 0.03154 0.03321 0.93% StateData::FillBoundary(geom) 41 0.02862 0.03142 0.0331 0.93% Gravity::interpolate_monopole_grav() 21 0.02774 0.02943 0.03189 0.89% Castro::construct_new_source() 50 0.02856 0.03 0.03174 0.89% Castro::post_init() 1 0.02632 0.02692 0.02746 0.77% Castro::construct_new_gravity_source() 10 0.02227 0.02379 0.02546 0.71% Amr::writePlotFile() 2 0.02322 0.02377 0.02432 0.68% Castro::finalize_do_advance() 10 0.01265 0.01932 0.02375 0.66% Castro::post_timestep() 10 0.01539 0.01586 0.01615 0.45% Castro::Castro() 1 0.009291 0.01174 0.01539 0.43% FabArray::setDomainBndry() 41 0.007389 0.01109 0.01377 0.38% Castro::apply_source_to_state() 20 0.01166 0.01251 0.01311 0.37% FabArray::Saxpy() 20 0.01162 0.01246 0.01307 0.37% VisMF::Write(FabArray) 2 0.009085 0.009695 0.01264 0.35% Castro::check_for_nan() 20 0.01037 0.01105 0.01178 0.33% MultiFab::contains_nan() 20 0.01035 0.01102 0.01176 0.33% Castro::initMFs() 1 0.006393 0.008092 0.01098 0.31% Castro::construct_old_source() 50 0.008328 0.00946 0.01006 0.28% Castro::construct_old_gravity_source() 10 0.008274 0.009384 0.009976 0.28% AmrLevel::AmrLevel(dm) 1 0.005374 0.006761 0.009406 0.26% StateData::define() 4 0.00536 0.006741 0.009379 0.26% Castro::computeNewDt() 9 0.009052 0.009073 0.009095 0.25% Castro::enforce_min_density() 62 0.007058 0.007295 0.007664 0.21% Castro::swap_state_time_levels() 10 0.002914 0.004178 0.004702 0.13% Castro::finalize_advance() 10 0.003105 0.003445 0.004078 0.11% Castro::buildMetrics() 1 0.001587 0.002038 0.002829 0.08% Castro::post_regrid() 1 0.001503 0.001645 0.001968 0.06% Amr::InitAmr() 1 0.000358 0.0005016 0.0007802 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 4.839e-05 0.0003407 0.0004819 0.01% DistributionMapping::LeastUsedCPUs() 1 4.117e-05 0.000334 0.0004725 0.01% Castro::enforce_consistent_e() 1 8.043e-05 9.469e-05 0.0001267 0.00% FabArrayBase::getCPC() 41 8.564e-05 9.443e-05 0.000111 0.00% Amr::writeSmallPlotFile() 1 3.062e-05 4.601e-05 5.921e-05 0.00% FabArrayBase::CPC::define() 2 2.809e-05 3.149e-05 4.054e-05 0.00% Castro::enforce_speed_limit() 62 2.283e-05 2.834e-05 3.912e-05 0.00% Amr::initSubcycle() 1 9.632e-06 1.293e-05 2.04e-05 0.00% Gravity::swapTimeLevels() 10 9.477e-06 1.109e-05 1.426e-05 0.00% Gravity::set_mass_offset() 10 1.086e-05 1.196e-05 1.302e-05 0.00% Castro::create_source_corrector() 10 7.786e-06 8.761e-06 1.032e-05 0.00% Castro::retry_advance_ctu() 10 6.785e-06 7.737e-06 9.22e-06 0.00% Castro::FluxRegCrseInit 10 6.591e-06 7.549e-06 9.008e-06 0.00% Castro::FluxRegFineAdd() 10 2.046e-06 2.913e-06 7.245e-06 0.00% DistributionMapping::Distribute() 1 1.111e-06 1.399e-06 1.736e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 40 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-7-g155f1f4c3f4f) finalized