Initializing AMReX (24.03-8-gae3af4339425)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-8-gae3af4339425) initialized Starting run at 05:31:58 UTC on 2024-03-14. Successfully read inputs file ... Castro git describe: 24.03-6-g9ab585a31 AMReX git describe: 24.03-8-gae3af4339 Microphysics git describe: 24.03-7-g124b71be reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014537557 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361857652 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361413967 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.363150687 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.367152966 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333075399 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.310909311 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311446251 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312844171 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312473257 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311535401 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007480297 seconds Ending run at 05:32:01 UTC on 2024-03-14. Run time = 3.570196722 Run time without initialization = 3.358153275 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.569 ... 3.57 ... 3.57 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3236 2.3886 2.4211 67.81% Gravity::make_radial_gravity() 21 0.2951 0.3027 0.3204 8.98% check_for_negative_density() 10 0.06445 0.09922 0.166 4.65% Castro::initData() 1 0.05721 0.09793 0.1437 4.02% Castro::estTimeStep() 21 0.02842 0.07792 0.1206 3.38% FabArray::ParallelCopy_finish() 41 0.03552 0.05415 0.09063 2.54% amrex::Copy() 193 0.06114 0.07816 0.08647 2.42% FabArray::setVal() 143 0.05791 0.06627 0.07765 2.17% Castro::reset_internal_energy(Fab) 1008 0.0478 0.04887 0.05019 1.41% Castro::normalize_species() 62 0.04113 0.04382 0.04608 1.29% FabArray::ParallelCopy_nowait() 41 0.03395 0.03994 0.04182 1.17% StateData::FillBoundary(geom) 41 0.02975 0.03216 0.03473 0.97% FillPatchIterator::Initialize 41 0.02769 0.03191 0.03354 0.94% Gravity::interpolate_monopole_grav() 21 0.02859 0.02928 0.02993 0.84% Castro::construct_new_gravity_source() 10 0.02076 0.02325 0.02597 0.73% Castro::computeTemp() 63 0.01952 0.02029 0.02082 0.58% Castro::initialize_do_advance() 10 0.01278 0.01725 0.01971 0.55% FabArray::Saxpy() 20 0.01011 0.01203 0.01312 0.37% Amr::writePlotFile() 2 0.00753 0.01074 0.0127 0.36% VisMF::Write(FabArray) 2 0.008505 0.009221 0.01206 0.34% Castro::initialize_advance() 10 0.005586 0.00971 0.01201 0.34% MultiFab::contains_nan() 20 0.009207 0.01003 0.01098 0.31% FabArray::setDomainBndry() 41 0.007048 0.009169 0.01019 0.29% Castro::construct_old_gravity_source() 10 0.006624 0.00901 0.009807 0.27% Castro::initMFs() 1 0.006975 0.007479 0.007679 0.22% Castro::construct_new_source() 50 0.005354 0.006031 0.006277 0.18% StateData::define() 4 0.006162 0.006198 0.006214 0.17% Castro::enforce_min_density() 62 0.005534 0.005923 0.006202 0.17% Gravity::get_new_grav_vector() 11 0.003252 0.003978 0.005234 0.15% Castro::swap_state_time_levels() 10 0.002661 0.003711 0.004378 0.12% main() 1 0.003076 0.003708 0.00416 0.12% Amr::coarseTimeStep() 10 0.001912 0.002608 0.003446 0.10% Gravity::get_old_grav_vector() 10 0.001705 0.002084 0.002465 0.07% Castro::buildMetrics() 1 0.001732 0.001758 0.001849 0.05% Castro::finalize_do_advance() 10 0.0004604 0.0008925 0.0009954 0.03% AmrLevel::FillPatch() 41 0.0007323 0.0008044 0.0008421 0.02% Amr::InitAmr() 1 0.0004164 0.0004515 0.0005816 0.02% Amr::timeStep() 10 0.0001697 0.0002121 0.0004229 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002783 0.000293 0.000322 0.01% DistributionMapping::LeastUsedCPUs() 1 2.537e-05 0.0001475 0.000186 0.01% Castro::clean_state() 62 0.0001409 0.0001602 0.000181 0.01% Castro::do_advance_ctu() 10 0.000134 0.000146 0.0001667 0.00% Castro::Castro() 1 0.0001019 0.0001214 0.000147 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001141 0.0001204 0.0001329 0.00% StateDataPhysBCFunct::() 41 9.698e-05 0.0001141 0.0001271 0.00% Castro::enforce_consistent_e() 1 8.59e-05 0.0001007 0.0001157 0.00% Castro::do_old_sources() 10 7.417e-05 9.442e-05 0.0001153 0.00% Castro::finalize_advance() 10 9.168e-05 0.0001064 0.0001147 0.00% Castro::construct_old_source() 50 5.453e-05 7.877e-05 9.386e-05 0.00% FabArray::ParallelCopy() 41 8.111e-05 8.718e-05 9.375e-05 0.00% FillPatchSingleLevel 41 6.598e-05 7.258e-05 8.366e-05 0.00% FabArrayBase::getCPC() 41 5.495e-05 6.638e-05 8.297e-05 0.00% Amr::FinalizeInit() 1 3.826e-06 1.547e-05 7.576e-05 0.00% Castro::do_new_sources() 10 5.976e-05 6.256e-05 6.625e-05 0.00% Castro::construct_new_gravity() 10 3.299e-05 4.052e-05 6.336e-05 0.00% Amr::defBaseLevel() 1 3.807e-05 4.705e-05 5.402e-05 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 4.548e-05 5.296e-05 0.00% Castro::subcycle_advance_ctu() 10 3.568e-05 4.543e-05 5.271e-05 0.00% Castro::advance() 10 3.907e-05 4.455e-05 4.93e-05 0.00% Castro::apply_source_to_state() 20 3.935e-05 4.59e-05 4.919e-05 0.00% FabArrayBase::CPC::define() 2 2.668e-05 3.031e-05 4.165e-05 0.00% Castro::construct_old_gravity() 10 3.494e-05 3.715e-05 4.031e-05 0.00% Castro::expand_state() 10 2.061e-05 2.461e-05 3.253e-05 0.00% Castro::enforce_speed_limit() 62 2.299e-05 2.6e-05 2.778e-05 0.00% Castro::check_for_nan() 20 1.992e-05 2.276e-05 2.567e-05 0.00% Amr::initSubcycle() 1 1.137e-05 1.341e-05 2.43e-05 0.00% Castro::post_init() 1 1.473e-05 1.601e-05 1.919e-05 0.00% Castro::post_timestep() 10 1.379e-05 1.525e-05 1.684e-05 0.00% Gravity::swapTimeLevels() 10 8.305e-06 1.12e-05 1.481e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.001e-05 1.13e-05 1.376e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.197e-05 1.333e-05 0.00% Castro::computeNewDt() 9 8.656e-06 1.022e-05 1.204e-05 0.00% Castro::FluxRegCrseInit 10 6.819e-06 8.165e-06 9.743e-06 0.00% Castro::retry_advance_ctu() 10 6.842e-06 7.806e-06 9.185e-06 0.00% Amr::initialInit() 1 1.673e-06 2.846e-06 9.076e-06 0.00% Castro::create_source_corrector() 10 7.226e-06 8.138e-06 9.044e-06 0.00% Amr::init() 1 1.716e-06 3.206e-06 7.615e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.367e-06 5.545e-06 7.437e-06 0.00% Amr::InitializeInit() 1 1.96e-06 2.616e-06 5.255e-06 0.00% Castro::computeInitialDt() 2 3.083e-06 3.409e-06 4.065e-06 0.00% Castro::post_regrid() 1 2.185e-06 2.948e-06 3.603e-06 0.00% Castro::FluxRegFineAdd() 10 2.181e-06 2.521e-06 2.972e-06 0.00% DistributionMapping::Distribute() 1 1.127e-06 1.273e-06 1.526e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.569 3.57 3.57 100.00% Amr::coarseTimeStep() 10 3.347 3.347 3.347 93.74% Amr::timeStep() 10 3.332 3.333 3.334 93.38% Castro::advance() 10 3.317 3.317 3.318 92.93% Castro::subcycle_advance_ctu() 10 3.237 3.246 3.258 91.25% Castro::do_advance_ctu() 10 3.237 3.246 3.258 91.25% Castro::construct_ctu_hydro_source() 10 2.507 2.51 2.513 70.38% Gravity::make_radial_gravity() 21 0.3123 0.3199 0.3334 9.34% Gravity::get_new_grav_vector() 11 0.2156 0.2167 0.2179 6.10% AmrLevel::FillPatch() 41 0.1867 0.1997 0.2153 6.03% Amr::init() 1 0.2113 0.2114 0.2114 5.92% Castro::construct_old_gravity() 10 0.1831 0.1869 0.1979 5.54% Gravity::get_old_grav_vector() 10 0.1825 0.1863 0.1974 5.53% Amr::initialInit() 1 0.1959 0.1965 0.1969 5.52% Castro::construct_new_gravity() 10 0.1907 0.1916 0.1927 5.40% FillPatchIterator::Initialize 41 0.1544 0.1678 0.1907 5.34% Castro::initialize_do_advance() 10 0.1603 0.1674 0.1717 4.81% Amr::InitializeInit() 1 0.08055 0.1211 0.1672 4.68% Amr::defBaseLevel() 1 0.08055 0.1211 0.1672 4.68% check_for_negative_density() 10 0.06445 0.09922 0.166 4.65% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1267 0.1559 4.37% FillPatchSingleLevel 41 0.1112 0.1266 0.1558 4.36% Castro::initData() 1 0.06184 0.1023 0.1482 4.15% FabArray::ParallelCopy() 41 0.07627 0.09428 0.1248 3.49% Castro::expand_state() 10 0.1058 0.114 0.1206 3.38% Castro::estTimeStep() 21 0.02842 0.07792 0.1206 3.38% Castro::clean_state() 62 0.1135 0.1183 0.1203 3.37% Amr::FinalizeInit() 1 0.0297 0.07534 0.1157 3.24% Castro::do_old_sources() 10 0.08754 0.09182 0.09435 2.64% FabArray::ParallelCopy_finish() 41 0.03552 0.05415 0.09063 2.54% Castro::computeInitialDt() 2 0.002692 0.04881 0.0894 2.50% amrex::Copy() 193 0.06114 0.07816 0.08647 2.42% FabArray::setVal() 143 0.05791 0.06627 0.07765 2.17% Castro::initialize_advance() 10 0.05518 0.067 0.07616 2.13% Castro::computeTemp() 63 0.06764 0.06945 0.07101 1.99% Castro::do_new_sources() 10 0.05792 0.06357 0.06987 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04812 0.04916 0.05048 1.41% Castro::reset_internal_energy(Fab) 1008 0.0478 0.04887 0.05019 1.41% Castro::normalize_species() 62 0.04113 0.04382 0.04608 1.29% FabArray::ParallelCopy_nowait() 41 0.03404 0.04004 0.04191 1.17% StateDataPhysBCFunct::() 41 0.02987 0.03227 0.03485 0.98% StateData::FillBoundary(geom) 41 0.02975 0.03216 0.03473 0.97% Castro::construct_new_source() 50 0.02612 0.02928 0.03203 0.90% Gravity::interpolate_monopole_grav() 21 0.02859 0.02928 0.02993 0.84% Castro::post_init() 1 0.02586 0.02619 0.02655 0.74% Castro::construct_new_gravity_source() 10 0.02076 0.02325 0.02597 0.73% Castro::finalize_do_advance() 10 0.01338 0.02065 0.02585 0.72% Amr::writePlotFile() 2 0.02204 0.02252 0.0231 0.65% Castro::post_timestep() 10 0.01558 0.01616 0.01698 0.48% Castro::apply_source_to_state() 20 0.01014 0.01208 0.01316 0.37% FabArray::Saxpy() 20 0.01011 0.01203 0.01312 0.37% Castro::Castro() 1 0.01132 0.01239 0.01271 0.36% VisMF::Write(FabArray) 2 0.008505 0.009221 0.01206 0.34% Castro::check_for_nan() 20 0.009227 0.01005 0.01101 0.31% MultiFab::contains_nan() 20 0.009207 0.01003 0.01098 0.31% FabArray::setDomainBndry() 41 0.007048 0.009169 0.01019 0.29% Castro::construct_old_source() 50 0.006679 0.009089 0.009884 0.28% Castro::construct_old_gravity_source() 10 0.006624 0.00901 0.009807 0.27% Castro::computeNewDt() 9 0.009343 0.009364 0.009385 0.26% Castro::initMFs() 1 0.006975 0.007479 0.007679 0.22% AmrLevel::AmrLevel(dm) 1 0.006172 0.00621 0.006225 0.17% StateData::define() 4 0.006162 0.006198 0.006214 0.17% Castro::enforce_min_density() 62 0.005534 0.005923 0.006202 0.17% Castro::swap_state_time_levels() 10 0.002661 0.003711 0.004378 0.12% Castro::finalize_advance() 10 0.002972 0.003385 0.004194 0.12% Castro::buildMetrics() 1 0.001882 0.001925 0.002004 0.06% Castro::post_regrid() 1 0.001412 0.00164 0.001923 0.05% Amr::InitAmr() 1 0.000428 0.0004649 0.000593 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.111e-05 0.0001543 0.0001941 0.01% DistributionMapping::LeastUsedCPUs() 1 2.537e-05 0.0001475 0.000186 0.01% Castro::enforce_consistent_e() 1 8.59e-05 0.0001007 0.0001157 0.00% FabArrayBase::getCPC() 41 8.705e-05 9.669e-05 0.0001123 0.00% Amr::writeSmallPlotFile() 1 3.035e-05 4.548e-05 5.296e-05 0.00% FabArrayBase::CPC::define() 2 2.668e-05 3.031e-05 4.165e-05 0.00% Castro::enforce_speed_limit() 62 2.299e-05 2.6e-05 2.778e-05 0.00% Amr::initSubcycle() 1 1.137e-05 1.341e-05 2.43e-05 0.00% Gravity::swapTimeLevels() 10 8.305e-06 1.12e-05 1.481e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.197e-05 1.333e-05 0.00% Castro::FluxRegCrseInit 10 6.819e-06 8.165e-06 9.743e-06 0.00% Castro::retry_advance_ctu() 10 6.842e-06 7.806e-06 9.185e-06 0.00% Castro::create_source_corrector() 10 7.226e-06 8.138e-06 9.044e-06 0.00% Castro::FluxRegFineAdd() 10 2.181e-06 2.521e-06 2.972e-06 0.00% DistributionMapping::Distribute() 1 1.127e-06 1.273e-06 1.526e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-8-gae3af4339425) finalized