Initializing AMReX (24.03-13-g3fe7aadc23c9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-13-g3fe7aadc23c9) initialized Starting run at 05:41:33 UTC on 2024-03-15. Successfully read inputs file ... Castro git describe: 24.03-7-ge19c0bdaa AMReX git describe: 24.03-13-g3fe7aadc2 Microphysics git describe: 24.03-10-ga5faa5f9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014850825 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365414324 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.377168176 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.394031864 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.416110268 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.392371002 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.38264867 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.384716465 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.377845028 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.377006649 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.391462021 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011381707 seconds Ending run at 05:41:37 UTC on 2024-03-15. Run time = 4.074000699 Run time without initialization = 3.877222581 Average number of zones advanced per microsecond: 0.676 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.073 ... 4.073 ... 4.074 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4924 2.6749 2.8764 70.60% check_for_negative_density() 10 0.02843 0.2372 0.4182 10.27% Gravity::make_radial_gravity() 21 0.2918 0.3068 0.3349 8.22% Castro::initData() 1 0.05726 0.09284 0.1289 3.16% FabArray::ParallelCopy_finish() 41 0.04987 0.06551 0.1162 2.85% Castro::estTimeStep() 21 0.0232 0.06871 0.1058 2.60% amrex::Copy() 193 0.07279 0.09307 0.1053 2.59% FabArray::setVal() 143 0.06368 0.08418 0.09392 2.31% Castro::reset_internal_energy(Fab) 1008 0.04861 0.05019 0.05282 1.30% FabArray::ParallelCopy_nowait() 41 0.04072 0.0474 0.05049 1.24% FillPatchIterator::Initialize 41 0.02592 0.0373 0.04512 1.11% Castro::normalize_species() 62 0.04188 0.04256 0.04344 1.07% StateData::FillBoundary(geom) 41 0.02926 0.03396 0.04057 1.00% Gravity::interpolate_monopole_grav() 21 0.02733 0.02907 0.03013 0.74% Castro::construct_new_gravity_source() 10 0.02581 0.0271 0.02948 0.72% Castro::computeTemp() 63 0.01959 0.02082 0.0223 0.55% Castro::initialize_do_advance() 10 0.01663 0.02022 0.022 0.54% FabArray::Saxpy() 20 0.01261 0.01566 0.01742 0.43% FabArray::setDomainBndry() 41 0.005678 0.01167 0.01499 0.37% MultiFab::contains_nan() 20 0.01164 0.01296 0.01494 0.37% Castro::initialize_advance() 10 0.004148 0.01207 0.01399 0.34% VisMF::Write(FabArray) 2 0.009225 0.01048 0.01341 0.33% Amr::writePlotFile() 2 0.009062 0.01213 0.01328 0.33% Castro::construct_old_gravity_source() 10 0.009868 0.01226 0.01319 0.32% Castro::initMFs() 1 0.006771 0.007683 0.008633 0.21% Castro::enforce_min_density() 62 0.007494 0.00774 0.008137 0.20% Castro::construct_new_source() 50 0.006217 0.007197 0.007577 0.19% StateData::define() 4 0.005638 0.006278 0.00665 0.16% main() 1 0.004914 0.005498 0.006218 0.15% Gravity::get_new_grav_vector() 11 0.002527 0.004069 0.005001 0.12% Castro::swap_state_time_levels() 10 0.002808 0.003945 0.004187 0.10% Amr::coarseTimeStep() 10 0.00161 0.002535 0.002946 0.07% Gravity::get_old_grav_vector() 10 0.001485 0.002237 0.002636 0.06% Castro::buildMetrics() 1 0.001577 0.001774 0.002051 0.05% Castro::finalize_do_advance() 10 0.000388 0.0009835 0.00151 0.04% AmrLevel::FillPatch() 41 0.000873 0.001032 0.001218 0.03% Amr::InitAmr() 1 0.0003694 0.0004218 0.0006107 0.01% Amr::timeStep() 10 0.0001761 0.0002465 0.0004791 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000296 0.0003089 0.000329 0.01% DistributionMapping::LeastUsedCPUs() 1 2.998e-05 0.0002156 0.0002753 0.01% Castro::clean_state() 62 0.0001713 0.0001907 0.0002227 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001184 0.0001456 0.0002151 0.01% Castro::do_advance_ctu() 10 0.0001347 0.0001762 0.0001983 0.00% Castro::finalize_advance() 10 9.96e-05 0.0001333 0.0001572 0.00% Castro::do_old_sources() 10 8.292e-05 0.0001221 0.0001372 0.00% StateDataPhysBCFunct::() 41 0.0001017 0.0001154 0.0001311 0.00% FabArray::ParallelCopy() 41 7.941e-05 9.122e-05 0.0001107 0.00% Castro::construct_old_source() 50 6.961e-05 9.298e-05 0.0001084 0.00% Castro::Castro() 1 7.8e-05 8.874e-05 9.718e-05 0.00% Castro::enforce_consistent_e() 1 7.84e-05 8.999e-05 9.676e-05 0.00% FillPatchSingleLevel 41 8.282e-05 8.613e-05 9.523e-05 0.00% Castro::do_new_sources() 10 6.872e-05 7.908e-05 8.669e-05 0.00% FabArrayBase::getCPC() 41 5.861e-05 6.99e-05 8.285e-05 0.00% Amr::FinalizeInit() 1 3.729e-06 1.544e-05 7.755e-05 0.00% Castro::advance() 10 4.625e-05 5.22e-05 6.635e-05 0.00% Castro::subcycle_advance_ctu() 10 4.312e-05 5.409e-05 6.605e-05 0.00% Castro::apply_source_to_state() 20 5.292e-05 5.775e-05 6.344e-05 0.00% Castro::construct_new_gravity() 10 3.881e-05 4.703e-05 5.784e-05 0.00% Amr::defBaseLevel() 1 3.906e-05 4.576e-05 5.673e-05 0.00% Castro::construct_old_gravity() 10 3.557e-05 4.345e-05 5.183e-05 0.00% Amr::writeSmallPlotFile() 1 2.949e-05 4.349e-05 4.919e-05 0.00% Castro::expand_state() 10 2.455e-05 3.069e-05 3.826e-05 0.00% FabArrayBase::CPC::define() 2 2.737e-05 3.094e-05 3.601e-05 0.00% Castro::enforce_speed_limit() 62 2.676e-05 3.18e-05 3.505e-05 0.00% Castro::check_for_nan() 20 2.541e-05 2.661e-05 2.992e-05 0.00% Castro::post_init() 1 1.476e-05 1.667e-05 2.028e-05 0.00% Castro::post_timestep() 10 1.416e-05 1.591e-05 1.947e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.09e-05 1.321e-05 1.739e-05 0.00% Gravity::swapTimeLevels() 10 7.444e-06 1.213e-05 1.594e-05 0.00% Gravity::set_mass_offset() 10 1.02e-05 1.272e-05 1.456e-05 0.00% Castro::create_source_corrector() 10 7.294e-06 9.42e-06 1.357e-05 0.00% Amr::initSubcycle() 1 9.832e-06 1.103e-05 1.165e-05 0.00% Castro::computeNewDt() 9 7.95e-06 9.298e-06 1.159e-05 0.00% Castro::FluxRegCrseInit 10 6.776e-06 8.696e-06 1.123e-05 0.00% Castro::retry_advance_ctu() 10 7.352e-06 8.181e-06 9.747e-06 0.00% Amr::initialInit() 1 1.319e-06 2.648e-06 8.725e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.211e-06 5.533e-06 8.569e-06 0.00% Amr::InitializeInit() 1 1.925e-06 2.622e-06 5.308e-06 0.00% Castro::computeInitialDt() 2 2.988e-06 3.483e-06 4.264e-06 0.00% Castro::post_regrid() 1 2.367e-06 3.218e-06 4.138e-06 0.00% Castro::FluxRegFineAdd() 10 1.991e-06 2.353e-06 3.093e-06 0.00% Amr::init() 1 2.171e-06 2.437e-06 3.039e-06 0.00% DistributionMapping::Distribute() 1 1.076e-06 1.199e-06 1.573e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.073 4.073 4.074 100.00% Amr::coarseTimeStep() 10 3.86 3.86 3.86 94.74% Amr::timeStep() 10 3.846 3.847 3.848 94.44% Castro::advance() 10 3.83 3.83 3.832 94.05% Castro::subcycle_advance_ctu() 10 3.735 3.743 3.766 92.45% Castro::do_advance_ctu() 10 3.735 3.743 3.766 92.44% Castro::construct_ctu_hydro_source() 10 2.927 2.935 2.942 72.20% check_for_negative_density() 10 0.02843 0.2372 0.4182 10.27% Gravity::make_radial_gravity() 21 0.3098 0.3244 0.3472 8.52% AmrLevel::FillPatch() 41 0.2077 0.2345 0.2465 6.05% FillPatchIterator::Initialize 41 0.1725 0.1964 0.2201 5.40% Gravity::get_new_grav_vector() 11 0.2169 0.2176 0.2184 5.36% Castro::construct_old_gravity() 10 0.1892 0.198 0.2177 5.34% Gravity::get_old_grav_vector() 10 0.1885 0.1973 0.2171 5.33% Castro::initialize_do_advance() 10 0.1792 0.1948 0.2027 4.97% Amr::init() 1 0.196 0.1962 0.1963 4.82% Castro::construct_new_gravity() 10 0.1916 0.1925 0.1932 4.74% FillPatchIterator::FillFromLevel0() 41 0.1363 0.1474 0.1871 4.59% FillPatchSingleLevel 41 0.1362 0.1473 0.1869 4.59% Amr::initialInit() 1 0.1809 0.1811 0.1814 4.45% FabArray::ParallelCopy() 41 0.1005 0.1131 0.1571 3.86% Amr::InitializeInit() 1 0.08091 0.115 0.1521 3.73% Amr::defBaseLevel() 1 0.0809 0.115 0.1521 3.73% Castro::expand_state() 10 0.1208 0.1346 0.1431 3.51% Castro::initData() 1 0.06143 0.09682 0.1325 3.25% Castro::clean_state() 62 0.1185 0.1209 0.126 3.09% Castro::do_old_sources() 10 0.102 0.1111 0.1164 2.86% FabArray::ParallelCopy_finish() 41 0.04987 0.06551 0.1162 2.85% Castro::estTimeStep() 21 0.0232 0.06871 0.1058 2.60% amrex::Copy() 193 0.07279 0.09307 0.1053 2.59% Amr::FinalizeInit() 1 0.02882 0.0661 0.1 2.46% FabArray::setVal() 143 0.06368 0.08418 0.09392 2.31% Castro::initialize_advance() 10 0.05879 0.08289 0.09119 2.24% Castro::do_new_sources() 10 0.06819 0.07232 0.07951 1.95% Castro::computeTemp() 63 0.06936 0.07132 0.07545 1.85% Castro::computeInitialDt() 2 0.002475 0.03963 0.07372 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04891 0.0505 0.05315 1.30% Castro::reset_internal_energy(Fab) 1008 0.04861 0.05019 0.05282 1.30% FabArray::ParallelCopy_nowait() 41 0.04083 0.0475 0.05058 1.24% Castro::normalize_species() 62 0.04188 0.04256 0.04344 1.07% StateDataPhysBCFunct::() 41 0.02937 0.03407 0.04068 1.00% StateData::FillBoundary(geom) 41 0.02926 0.03396 0.04057 1.00% Castro::construct_new_source() 50 0.0328 0.0343 0.03685 0.90% Gravity::interpolate_monopole_grav() 21 0.02733 0.02907 0.03013 0.74% Castro::construct_new_gravity_source() 10 0.02581 0.0271 0.02948 0.72% Amr::writePlotFile() 2 0.02636 0.0266 0.02682 0.66% Castro::post_init() 1 0.02595 0.02619 0.02652 0.65% Castro::finalize_do_advance() 10 0.0126 0.02092 0.02579 0.63% Castro::apply_source_to_state() 20 0.01267 0.01572 0.01748 0.43% FabArray::Saxpy() 20 0.01261 0.01566 0.01742 0.43% Castro::post_timestep() 10 0.01585 0.01611 0.01632 0.40% FabArray::setDomainBndry() 41 0.005678 0.01167 0.01499 0.37% Castro::check_for_nan() 20 0.01167 0.01299 0.01496 0.37% MultiFab::contains_nan() 20 0.01164 0.01296 0.01494 0.37% VisMF::Write(FabArray) 2 0.009225 0.01048 0.01341 0.33% Castro::construct_old_source() 50 0.009943 0.01235 0.01329 0.33% Castro::construct_old_gravity_source() 10 0.009868 0.01226 0.01319 0.32% Castro::Castro() 1 0.009768 0.0116 0.01268 0.31% Castro::computeNewDt() 9 0.009148 0.009162 0.00918 0.23% Castro::initMFs() 1 0.006771 0.007683 0.008633 0.21% Castro::enforce_min_density() 62 0.007494 0.00774 0.008137 0.20% AmrLevel::AmrLevel(dm) 1 0.005651 0.006291 0.006664 0.16% StateData::define() 4 0.005638 0.006278 0.00665 0.16% Castro::finalize_advance() 10 0.003962 0.004516 0.005187 0.13% Castro::swap_state_time_levels() 10 0.002808 0.003945 0.004187 0.10% Castro::buildMetrics() 1 0.001694 0.00192 0.002218 0.05% Castro::post_regrid() 1 0.0015 0.001594 0.00168 0.04% Amr::InitAmr() 1 0.0003799 0.0004329 0.0006223 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.558e-05 0.0002223 0.0002849 0.01% DistributionMapping::LeastUsedCPUs() 1 2.998e-05 0.0002156 0.0002753 0.01% FabArrayBase::getCPC() 41 8.598e-05 0.0001008 0.0001143 0.00% Castro::enforce_consistent_e() 1 7.84e-05 8.999e-05 9.676e-05 0.00% Amr::writeSmallPlotFile() 1 2.949e-05 4.349e-05 4.919e-05 0.00% FabArrayBase::CPC::define() 2 2.737e-05 3.094e-05 3.601e-05 0.00% Castro::enforce_speed_limit() 62 2.676e-05 3.18e-05 3.505e-05 0.00% Gravity::swapTimeLevels() 10 7.444e-06 1.213e-05 1.594e-05 0.00% Gravity::set_mass_offset() 10 1.02e-05 1.272e-05 1.456e-05 0.00% Castro::create_source_corrector() 10 7.294e-06 9.42e-06 1.357e-05 0.00% Amr::initSubcycle() 1 9.832e-06 1.103e-05 1.165e-05 0.00% Castro::FluxRegCrseInit 10 6.776e-06 8.696e-06 1.123e-05 0.00% Castro::retry_advance_ctu() 10 7.352e-06 8.181e-06 9.747e-06 0.00% Castro::FluxRegFineAdd() 10 1.991e-06 2.353e-06 3.093e-06 0.00% DistributionMapping::Distribute() 1 1.076e-06 1.199e-06 1.573e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 34 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-13-g3fe7aadc23c9) finalized