Initializing AMReX (24.03-17-ga5720c951e81)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.03-17-ga5720c951e81) initialized Starting run at 05:40:06 UTC on 2024-03-18. Successfully read inputs file ... Castro git describe: 24.03-10-g3a323186e AMReX git describe: 24.03-17-ga5720c951 Microphysics git describe: 24.03-14-gd2554385 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014042793 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.349067588 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339116284 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336061077 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.368586997 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.39284367 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329481544 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313713938 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313100381 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313604565 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314649987 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007646508 seconds Ending run at 05:40:09 UTC on 2024-03-18. Run time = 3.586263744 Run time without initialization = 3.383218069 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.585 ... 3.586 ... 3.586 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3336 2.3843 2.4493 68.30% Gravity::make_radial_gravity() 21 0.3059 0.3295 0.3423 9.54% Castro::initData() 1 0.0474 0.1008 0.1388 3.87% check_for_negative_density() 10 0.01454 0.08154 0.1355 3.78% Castro::estTimeStep() 21 0.03916 0.07437 0.1314 3.66% FabArray::ParallelCopy_finish() 41 0.06219 0.06915 0.09657 2.69% amrex::Copy() 193 0.06173 0.0789 0.09147 2.55% FabArray::setVal() 143 0.06172 0.06511 0.07386 2.06% Castro::reset_internal_energy(Fab) 1008 0.04743 0.0478 0.04811 1.34% Castro::normalize_species() 62 0.04134 0.04256 0.04462 1.24% FabArray::ParallelCopy_nowait() 41 0.03292 0.03856 0.04004 1.12% FillPatchIterator::Initialize 41 0.02817 0.03203 0.03401 0.95% StateData::FillBoundary(geom) 41 0.02991 0.03094 0.03344 0.93% Gravity::interpolate_monopole_grav() 21 0.02742 0.02956 0.03069 0.86% Castro::construct_new_gravity_source() 10 0.02144 0.02324 0.02671 0.74% Castro::computeTemp() 63 0.01952 0.01989 0.02024 0.56% Castro::initialize_do_advance() 10 0.01282 0.01588 0.01784 0.50% MultiFab::contains_nan() 20 0.01012 0.01121 0.01406 0.39% FabArray::Saxpy() 20 0.01151 0.01197 0.01271 0.35% Castro::initialize_advance() 10 0.005524 0.009725 0.01232 0.34% Amr::writePlotFile() 2 0.007625 0.0103 0.01213 0.34% FabArray::setDomainBndry() 41 0.007595 0.009652 0.01212 0.34% VisMF::Write(FabArray) 2 0.008538 0.009185 0.01158 0.32% Castro::initMFs() 1 0.006353 0.007865 0.01008 0.28% Castro::construct_old_gravity_source() 10 0.00618 0.008397 0.008974 0.25% StateData::define() 4 0.005306 0.006447 0.008023 0.22% Castro::enforce_min_density() 62 0.007179 0.00737 0.007583 0.21% Castro::construct_new_source() 50 0.005709 0.005936 0.006165 0.17% main() 1 0.003264 0.004076 0.004512 0.13% Amr::coarseTimeStep() 10 0.001831 0.003461 0.004304 0.12% Castro::swap_state_time_levels() 10 0.002755 0.003757 0.004104 0.11% Gravity::get_new_grav_vector() 11 0.00292 0.00345 0.003807 0.11% Castro::buildMetrics() 1 0.001466 0.001845 0.002308 0.06% Gravity::get_old_grav_vector() 10 0.001587 0.001961 0.002224 0.06% Castro::finalize_do_advance() 10 0.0004125 0.0009003 0.001002 0.03% AmrLevel::FillPatch() 41 0.0007534 0.0009119 0.0009812 0.03% Amr::InitAmr() 1 0.0003517 0.0004939 0.0008759 0.02% DistributionMapping::LeastUsedCPUs() 1 2.699e-05 0.0004399 0.000609 0.02% Amr::timeStep() 10 0.0001739 0.0002221 0.000419 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00028 0.0002982 0.0003451 0.01% Castro::do_advance_ctu() 10 0.0001356 0.0001527 0.000181 0.01% Castro::clean_state() 62 0.0001363 0.0001545 0.0001733 0.00% StateDataPhysBCFunct::() 41 9.467e-05 0.000114 0.0001541 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001119 0.0001296 0.0001505 0.00% Castro::finalize_advance() 10 9.27e-05 0.0001036 0.0001176 0.00% Castro::Castro() 1 7.017e-05 8.915e-05 0.0001084 0.00% Castro::do_old_sources() 10 8.296e-05 9.447e-05 0.000107 0.00% Castro::enforce_consistent_e() 1 7.662e-05 9.135e-05 0.0001048 0.00% FabArray::ParallelCopy() 41 7.89e-05 8.731e-05 0.0001031 0.00% Castro::construct_old_source() 50 6.414e-05 7.572e-05 9.227e-05 0.00% FillPatchSingleLevel 41 6.96e-05 7.452e-05 8.001e-05 0.00% Amr::FinalizeInit() 1 2.96e-06 1.492e-05 7.746e-05 0.00% Castro::do_new_sources() 10 5.856e-05 6.543e-05 7.45e-05 0.00% FabArrayBase::getCPC() 41 5.243e-05 6.016e-05 7.119e-05 0.00% Castro::apply_source_to_state() 20 4.292e-05 4.894e-05 7.078e-05 0.00% Amr::writeSmallPlotFile() 1 3.317e-05 4.757e-05 5.911e-05 0.00% Castro::advance() 10 4.213e-05 4.947e-05 5.911e-05 0.00% Castro::subcycle_advance_ctu() 10 4.011e-05 5.053e-05 5.78e-05 0.00% Amr::defBaseLevel() 1 3.836e-05 4.83e-05 5.334e-05 0.00% Castro::construct_old_gravity() 10 3.5e-05 4.029e-05 5.024e-05 0.00% Castro::construct_new_gravity() 10 3.268e-05 3.642e-05 4.098e-05 0.00% Castro::enforce_speed_limit() 62 2.442e-05 2.926e-05 4.076e-05 0.00% FabArrayBase::CPC::define() 2 2.609e-05 3.054e-05 3.968e-05 0.00% Castro::expand_state() 10 2.105e-05 2.572e-05 3.022e-05 0.00% Castro::post_init() 1 1.483e-05 1.784e-05 2.68e-05 0.00% Castro::check_for_nan() 20 2.247e-05 2.386e-05 2.584e-05 0.00% Gravity::set_mass_offset() 10 9.442e-06 1.277e-05 2.091e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.311e-05 2.074e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.593e-06 1.286e-05 1.928e-05 0.00% Castro::computeNewDt() 9 9.22e-06 1.257e-05 1.767e-05 0.00% Castro::post_timestep() 10 1.256e-05 1.431e-05 1.65e-05 0.00% Castro::retry_advance_ctu() 10 6.394e-06 8.814e-06 1.622e-05 0.00% Castro::create_source_corrector() 10 7.782e-06 9.191e-06 1.548e-05 0.00% Gravity::swapTimeLevels() 10 7.486e-06 1.036e-05 1.23e-05 0.00% Castro::FluxRegCrseInit 10 6.961e-06 8.247e-06 9.414e-06 0.00% Amr::init() 1 1.698e-06 3.083e-06 7.428e-06 0.00% Amr::InitializeInit() 1 1.944e-06 2.841e-06 6.491e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.373e-06 5.03e-06 5.805e-06 0.00% Castro::computeInitialDt() 2 2.672e-06 3.344e-06 4.338e-06 0.00% Castro::post_regrid() 1 2.174e-06 3.255e-06 4.126e-06 0.00% Castro::FluxRegFineAdd() 10 1.996e-06 2.351e-06 2.659e-06 0.00% Amr::initialInit() 1 1.376e-06 1.791e-06 2.2e-06 0.00% DistributionMapping::Distribute() 1 1.132e-06 1.377e-06 2.157e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.585 3.586 3.586 100.00% Amr::coarseTimeStep() 10 3.371 3.371 3.371 94.00% Amr::timeStep() 10 3.355 3.356 3.358 93.63% Castro::advance() 10 3.339 3.34 3.34 93.14% Castro::subcycle_advance_ctu() 10 3.262 3.269 3.274 91.30% Castro::do_advance_ctu() 10 3.262 3.269 3.274 91.30% Castro::construct_ctu_hydro_source() 10 2.485 2.487 2.492 69.48% Gravity::make_radial_gravity() 21 0.3221 0.3459 0.3556 9.92% AmrLevel::FillPatch() 41 0.2004 0.2132 0.2271 6.33% Gravity::get_new_grav_vector() 11 0.2238 0.2246 0.2256 6.29% Castro::construct_old_gravity() 10 0.1867 0.208 0.2175 6.06% Gravity::get_old_grav_vector() 10 0.1856 0.2072 0.2165 6.04% Amr::init() 1 0.202 0.2024 0.2025 5.65% Castro::construct_new_gravity() 10 0.2 0.2009 0.2015 5.62% FillPatchIterator::Initialize 41 0.1694 0.1808 0.1973 5.50% Castro::initialize_do_advance() 10 0.1647 0.1711 0.1924 5.36% Amr::initialInit() 1 0.1877 0.188 0.1883 5.25% Amr::InitializeInit() 1 0.0658 0.1233 0.1607 4.48% Amr::defBaseLevel() 1 0.0658 0.1233 0.1607 4.48% FillPatchIterator::FillFromLevel0() 41 0.1312 0.1391 0.1606 4.48% FillPatchSingleLevel 41 0.1311 0.139 0.1604 4.47% Castro::initData() 1 0.05076 0.1047 0.1427 3.98% Castro::expand_state() 10 0.109 0.1185 0.1376 3.84% check_for_negative_density() 10 0.01454 0.08154 0.1355 3.78% Castro::estTimeStep() 21 0.03916 0.07437 0.1314 3.66% FabArray::ParallelCopy() 41 0.1007 0.1079 0.1297 3.62% Amr::FinalizeInit() 1 0.02751 0.06467 0.1225 3.41% Castro::clean_state() 62 0.1157 0.1171 0.1198 3.34% Castro::do_old_sources() 10 0.08902 0.09729 0.1009 2.81% Castro::computeInitialDt() 2 0.002293 0.03952 0.09723 2.71% FabArray::ParallelCopy_finish() 41 0.06219 0.06915 0.09657 2.69% amrex::Copy() 193 0.06173 0.0789 0.09147 2.55% Castro::initialize_advance() 10 0.06125 0.067 0.07392 2.06% FabArray::setVal() 143 0.06172 0.06511 0.07386 2.06% Castro::do_new_sources() 10 0.0575 0.06341 0.07364 2.05% Castro::computeTemp() 63 0.06724 0.06799 0.06856 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04772 0.04809 0.04841 1.35% Castro::reset_internal_energy(Fab) 1008 0.04743 0.0478 0.04811 1.34% Castro::normalize_species() 62 0.04134 0.04256 0.04462 1.24% FabArray::ParallelCopy_nowait() 41 0.03302 0.03865 0.04012 1.12% StateDataPhysBCFunct::() 41 0.03 0.03105 0.03359 0.94% StateData::FillBoundary(geom) 41 0.02991 0.03094 0.03344 0.93% Castro::finalize_do_advance() 10 0.01486 0.02543 0.03304 0.92% Castro::construct_new_source() 50 0.02734 0.02918 0.0328 0.91% Gravity::interpolate_monopole_grav() 21 0.02742 0.02956 0.03069 0.86% Castro::construct_new_gravity_source() 10 0.02144 0.02324 0.02671 0.74% Castro::post_init() 1 0.0244 0.02465 0.02477 0.69% Amr::writePlotFile() 2 0.02197 0.0221 0.02254 0.63% Castro::post_timestep() 10 0.01567 0.0163 0.01731 0.48% Castro::Castro() 1 0.009063 0.01173 0.0141 0.39% Castro::check_for_nan() 20 0.01014 0.01124 0.01408 0.39% MultiFab::contains_nan() 20 0.01012 0.01121 0.01406 0.39% Castro::apply_source_to_state() 20 0.01155 0.01202 0.01275 0.36% FabArray::Saxpy() 20 0.01151 0.01197 0.01271 0.35% FabArray::setDomainBndry() 41 0.007595 0.009652 0.01212 0.34% VisMF::Write(FabArray) 2 0.008538 0.009185 0.01158 0.32% Castro::computeNewDt() 9 0.01033 0.01034 0.01036 0.29% Castro::initMFs() 1 0.006353 0.007865 0.01008 0.28% Castro::construct_old_source() 50 0.006246 0.008473 0.009053 0.25% Castro::construct_old_gravity_source() 10 0.00618 0.008397 0.008974 0.25% AmrLevel::AmrLevel(dm) 1 0.005319 0.00646 0.008042 0.22% StateData::define() 4 0.005306 0.006447 0.008023 0.22% Castro::enforce_min_density() 62 0.007179 0.00737 0.007583 0.21% Castro::swap_state_time_levels() 10 0.002755 0.003757 0.004104 0.11% Castro::finalize_advance() 10 0.003016 0.003407 0.004086 0.11% Castro::buildMetrics() 1 0.001577 0.001996 0.002514 0.07% Castro::post_regrid() 1 0.001443 0.001637 0.001967 0.05% Amr::InitAmr() 1 0.0003618 0.000507 0.0008947 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.363e-05 0.0004463 0.000616 0.02% DistributionMapping::LeastUsedCPUs() 1 2.699e-05 0.0004399 0.000609 0.02% Castro::enforce_consistent_e() 1 7.662e-05 9.135e-05 0.0001048 0.00% FabArrayBase::getCPC() 41 8.333e-05 9.071e-05 0.0001012 0.00% Amr::writeSmallPlotFile() 1 3.317e-05 4.757e-05 5.911e-05 0.00% Castro::enforce_speed_limit() 62 2.442e-05 2.926e-05 4.076e-05 0.00% FabArrayBase::CPC::define() 2 2.609e-05 3.054e-05 3.968e-05 0.00% Gravity::set_mass_offset() 10 9.442e-06 1.277e-05 2.091e-05 0.00% Amr::initSubcycle() 1 1.011e-05 1.311e-05 2.074e-05 0.00% Castro::retry_advance_ctu() 10 6.394e-06 8.814e-06 1.622e-05 0.00% Castro::create_source_corrector() 10 7.782e-06 9.191e-06 1.548e-05 0.00% Gravity::swapTimeLevels() 10 7.486e-06 1.036e-05 1.23e-05 0.00% Castro::FluxRegCrseInit 10 6.961e-06 8.247e-06 9.414e-06 0.00% Castro::FluxRegFineAdd() 10 1.996e-06 2.351e-06 2.659e-06 0.00% DistributionMapping::Distribute() 1 1.132e-06 1.377e-06 2.157e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 40 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.03-17-ga5720c951e81) finalized