Initializing AMReX (v2024-26-g34a5327e2fef)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-26-g34a5327e2fef) initialized Starting run at 05:33:59 UTC on 2024-03-20. Successfully read inputs file ... Castro git describe: 24.03-24-gbc483ba16 AMReX git describe: v2024-26-g34a5327e2 Microphysics git describe: 24.03-17-gaa0a4ffe reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016110621 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366144648 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339058629 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336576383 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.403914238 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.3481233 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.318326929 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318512071 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316968476 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.319187806 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318816219 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008717623 seconds Ending run at 05:34:03 UTC on 2024-03-20. Run time = 3.589914004 Run time without initialization = 3.400177628 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.588 ... 3.589 ... 3.59 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2916 2.3887 2.4575 68.45% Gravity::make_radial_gravity() 21 0.2913 0.3049 0.3253 9.06% check_for_negative_density() 10 0.03498 0.107 0.2103 5.86% Castro::initData() 1 0.04884 0.08741 0.1218 3.39% Castro::estTimeStep() 21 0.0343 0.07731 0.1178 3.28% amrex::Copy() 193 0.06029 0.07786 0.08786 2.45% FabArray::ParallelCopy_finish() 41 0.05001 0.0609 0.08618 2.40% FabArray::setVal() 143 0.06572 0.07149 0.07841 2.18% Castro::reset_internal_energy(Fab) 1008 0.0468 0.04771 0.04858 1.35% Castro::normalize_species() 62 0.04194 0.04284 0.04426 1.23% FabArray::ParallelCopy_nowait() 41 0.03234 0.04023 0.04419 1.23% FillPatchIterator::Initialize 41 0.02619 0.03335 0.03759 1.05% StateData::FillBoundary(geom) 41 0.02833 0.03119 0.03419 0.95% Gravity::interpolate_monopole_grav() 21 0.02839 0.02933 0.03038 0.85% Castro::construct_new_gravity_source() 10 0.0219 0.02392 0.02629 0.73% Castro::computeTemp() 63 0.01839 0.01968 0.02037 0.57% Castro::initialize_do_advance() 10 0.01195 0.01759 0.01912 0.53% FabArray::Saxpy() 20 0.009897 0.01184 0.01326 0.37% FabArray::setDomainBndry() 41 0.007255 0.009999 0.01304 0.36% MultiFab::contains_nan() 20 0.01018 0.01099 0.01292 0.36% VisMF::Write(FabArray) 2 0.008932 0.009674 0.01276 0.36% Amr::writePlotFile() 2 0.009082 0.01184 0.01266 0.35% Castro::initialize_advance() 10 0.01069 0.01127 0.01206 0.34% Castro::construct_old_gravity_source() 10 0.005586 0.008487 0.009605 0.27% Castro::initMFs() 1 0.006546 0.007057 0.008211 0.23% Castro::enforce_min_density() 62 0.007099 0.00739 0.007706 0.21% Amr::coarseTimeStep() 10 0.001124 0.006368 0.007506 0.21% StateData::define() 4 0.005382 0.005839 0.006357 0.18% Castro::construct_new_source() 50 0.005289 0.005906 0.006326 0.18% Gravity::get_new_grav_vector() 11 0.00287 0.004101 0.005155 0.14% main() 1 0.003424 0.004372 0.005123 0.14% Castro::swap_state_time_levels() 10 0.003049 0.004172 0.004431 0.12% Gravity::get_old_grav_vector() 10 0.001517 0.002067 0.002496 0.07% Castro::buildMetrics() 1 0.001505 0.001649 0.001757 0.05% Castro::finalize_do_advance() 10 0.0004263 0.0009726 0.001442 0.04% AmrLevel::FillPatch() 41 0.000713 0.0008759 0.001013 0.03% Amr::InitAmr() 1 0.0003496 0.0003945 0.0004987 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002738 0.0003062 0.0004632 0.01% Amr::timeStep() 10 0.0001701 0.0002145 0.000402 0.01% Castro::do_advance_ctu() 10 0.0001436 0.0001583 0.0001839 0.01% Castro::clean_state() 62 0.0001572 0.0001726 0.0001837 0.01% DistributionMapping::LeastUsedCPUs() 1 2.343e-05 0.0001093 0.0001522 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001168 0.0001277 0.0001416 0.00% Castro::finalize_advance() 10 0.000105 0.0001132 0.0001217 0.00% StateDataPhysBCFunct::() 41 8.936e-05 0.000104 0.0001177 0.00% Castro::Castro() 1 8.443e-05 0.0001007 0.0001167 0.00% Castro::do_old_sources() 10 7.39e-05 9.516e-05 0.000113 0.00% Castro::enforce_consistent_e() 1 8.097e-05 8.831e-05 0.0001027 0.00% FabArray::ParallelCopy() 41 8.269e-05 9.029e-05 9.814e-05 0.00% Castro::construct_old_source() 50 5.227e-05 7.195e-05 9.57e-05 0.00% Castro::do_new_sources() 10 5.203e-05 6.754e-05 8.661e-05 0.00% FillPatchSingleLevel 41 6.822e-05 7.551e-05 8.343e-05 0.00% Amr::FinalizeInit() 1 3.999e-06 1.564e-05 7.938e-05 0.00% FabArrayBase::getCPC() 41 5.506e-05 6.397e-05 7.462e-05 0.00% Amr::writeSmallPlotFile() 1 3.323e-05 5.204e-05 7.393e-05 0.00% Castro::advance() 10 4.052e-05 4.87e-05 5.703e-05 0.00% Castro::subcycle_advance_ctu() 10 3.351e-05 4.493e-05 5.702e-05 0.00% Castro::apply_source_to_state() 20 3.85e-05 4.54e-05 5.276e-05 0.00% Amr::defBaseLevel() 1 3.756e-05 4.468e-05 5.275e-05 0.00% Castro::construct_new_gravity() 10 3.235e-05 3.991e-05 4.965e-05 0.00% Castro::construct_old_gravity() 10 2.953e-05 3.776e-05 4.67e-05 0.00% FabArrayBase::CPC::define() 2 2.784e-05 3.069e-05 3.971e-05 0.00% Castro::enforce_speed_limit() 62 2.56e-05 2.868e-05 3.611e-05 0.00% Castro::check_for_nan() 20 2.395e-05 2.649e-05 3.448e-05 0.00% Castro::retry_advance_ctu() 10 7.251e-06 1.132e-05 3.443e-05 0.00% Castro::expand_state() 10 2.095e-05 2.605e-05 3.248e-05 0.00% Castro::post_timestep() 10 1.391e-05 1.663e-05 2.926e-05 0.00% Castro::computeNewDt() 9 8.23e-06 1.21e-05 2.532e-05 0.00% Gravity::set_mass_offset() 10 1.041e-05 1.414e-05 2.241e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.379e-05 1.647e-05 1.92e-05 0.00% Castro::FluxRegCrseInit 10 7.113e-06 8.284e-06 1.245e-05 0.00% Amr::initSubcycle() 1 9.921e-06 1.105e-05 1.174e-05 0.00% Gravity::swapTimeLevels() 10 8.824e-06 1.026e-05 1.164e-05 0.00% Castro::create_source_corrector() 10 7.007e-06 8.807e-06 1.16e-05 0.00% Amr::init() 1 1.726e-06 2.9e-06 8.455e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.85e-06 5.342e-06 7.604e-06 0.00% Amr::InitializeInit() 1 1.935e-06 2.581e-06 4.782e-06 0.00% Castro::computeInitialDt() 2 2.874e-06 3.648e-06 4.582e-06 0.00% Castro::post_regrid() 1 2.55e-06 3.394e-06 4.318e-06 0.00% Castro::post_init() 1 2.5e-06 3.161e-06 3.866e-06 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.269e-06 2.876e-06 0.00% DistributionMapping::Distribute() 1 1.18e-06 1.402e-06 2.223e-06 0.00% Amr::initialInit() 1 1.375e-06 1.655e-06 2.087e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.588 3.589 3.59 100.00% Amr::coarseTimeStep() 10 3.386 3.386 3.386 94.33% Amr::timeStep() 10 3.368 3.369 3.375 94.00% Castro::advance() 10 3.352 3.353 3.357 93.52% Castro::subcycle_advance_ctu() 10 3.274 3.276 3.28 91.38% Castro::do_advance_ctu() 10 3.274 3.276 3.28 91.38% Castro::construct_ctu_hydro_source() 10 2.513 2.518 2.526 70.36% Gravity::make_radial_gravity() 21 0.3083 0.3207 0.3374 9.40% Gravity::get_new_grav_vector() 11 0.2147 0.2172 0.2194 6.11% AmrLevel::FillPatch() 41 0.1989 0.2079 0.2165 6.03% check_for_negative_density() 10 0.03498 0.107 0.2103 5.86% Castro::construct_old_gravity() 10 0.1807 0.1899 0.2061 5.74% Gravity::get_old_grav_vector() 10 0.1801 0.1892 0.2056 5.73% Castro::construct_new_gravity() 10 0.1891 0.1915 0.193 5.38% Amr::init() 1 0.1891 0.1892 0.1892 5.27% Castro::initialize_do_advance() 10 0.1554 0.1725 0.181 5.04% FillPatchIterator::Initialize 41 0.1723 0.1762 0.1808 5.04% Amr::initialInit() 1 0.1728 0.1734 0.174 4.85% FillPatchIterator::FillFromLevel0() 41 0.1241 0.1328 0.1473 4.10% FillPatchSingleLevel 41 0.1239 0.1327 0.1472 4.10% Amr::InitializeInit() 1 0.06947 0.1085 0.1438 4.01% Amr::defBaseLevel() 1 0.06947 0.1085 0.1438 4.01% Castro::initData() 1 0.05298 0.09137 0.1253 3.49% Castro::expand_state() 10 0.1085 0.1177 0.125 3.48% Castro::clean_state() 62 0.1147 0.1172 0.1196 3.33% FabArray::ParallelCopy() 41 0.09135 0.1013 0.1187 3.31% Castro::estTimeStep() 21 0.0343 0.07731 0.1178 3.28% Amr::FinalizeInit() 1 0.02915 0.06489 0.1033 2.88% Castro::do_old_sources() 10 0.08985 0.0935 0.09598 2.67% amrex::Copy() 193 0.06029 0.07786 0.08786 2.45% FabArray::ParallelCopy_finish() 41 0.05001 0.0609 0.08618 2.40% FabArray::setVal() 143 0.06572 0.07149 0.07841 2.18% Castro::computeInitialDt() 2 0.002531 0.03779 0.07676 2.14% Castro::do_new_sources() 10 0.05798 0.06435 0.07602 2.12% Castro::initialize_advance() 10 0.0716 0.07347 0.07521 2.09% Castro::computeTemp() 63 0.06563 0.06769 0.06912 1.93% Castro::reset_internal_energy(MultiFab) 63 0.0471 0.04802 0.04887 1.36% Castro::reset_internal_energy(Fab) 1008 0.0468 0.04771 0.04858 1.35% FabArray::ParallelCopy_nowait() 41 0.03243 0.04032 0.04428 1.23% Castro::normalize_species() 62 0.04194 0.04284 0.04426 1.23% Castro::finalize_do_advance() 10 0.02025 0.03111 0.0393 1.09% StateDataPhysBCFunct::() 41 0.02843 0.03129 0.0343 0.96% StateData::FillBoundary(geom) 41 0.02833 0.03119 0.03419 0.95% Castro::construct_new_source() 50 0.02719 0.02983 0.03183 0.89% Gravity::interpolate_monopole_grav() 21 0.02839 0.02933 0.03038 0.85% Castro::post_init() 1 0.02607 0.02673 0.02721 0.76% Castro::construct_new_gravity_source() 10 0.0219 0.02392 0.02629 0.73% Amr::writePlotFile() 2 0.02396 0.02456 0.02513 0.70% Castro::post_timestep() 10 0.01528 0.01593 0.01715 0.48% Castro::apply_source_to_state() 20 0.00994 0.01188 0.01331 0.37% FabArray::Saxpy() 20 0.009897 0.01184 0.01326 0.37% FabArray::setDomainBndry() 41 0.007255 0.009999 0.01304 0.36% Castro::check_for_nan() 20 0.01021 0.01102 0.01295 0.36% MultiFab::contains_nan() 20 0.01018 0.01099 0.01292 0.36% VisMF::Write(FabArray) 2 0.008932 0.009674 0.01276 0.36% Castro::Castro() 1 0.01034 0.01114 0.01199 0.33% Castro::construct_old_source() 50 0.005639 0.008559 0.0097 0.27% Castro::construct_old_gravity_source() 10 0.005586 0.008487 0.009605 0.27% Castro::computeNewDt() 9 0.009367 0.009394 0.00941 0.26% Castro::initMFs() 1 0.006546 0.007057 0.008211 0.23% Castro::enforce_min_density() 62 0.007099 0.00739 0.007706 0.21% AmrLevel::AmrLevel(dm) 1 0.005398 0.005856 0.006373 0.18% StateData::define() 4 0.005382 0.005839 0.006357 0.18% Castro::swap_state_time_levels() 10 0.003049 0.004172 0.004431 0.12% Castro::finalize_advance() 10 0.003307 0.003594 0.003835 0.11% Castro::buildMetrics() 1 0.001618 0.001786 0.001911 0.05% Castro::post_regrid() 1 0.0015 0.001615 0.001843 0.05% Amr::InitAmr() 1 0.0003602 0.0004055 0.0005086 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.846e-05 0.0001161 0.0001611 0.00% DistributionMapping::LeastUsedCPUs() 1 2.343e-05 0.0001093 0.0001522 0.00% FabArrayBase::getCPC() 41 8.318e-05 9.467e-05 0.0001094 0.00% Castro::enforce_consistent_e() 1 8.097e-05 8.831e-05 0.0001027 0.00% Amr::writeSmallPlotFile() 1 3.323e-05 5.204e-05 7.393e-05 0.00% FabArrayBase::CPC::define() 2 2.784e-05 3.069e-05 3.971e-05 0.00% Castro::enforce_speed_limit() 62 2.56e-05 2.868e-05 3.611e-05 0.00% Castro::retry_advance_ctu() 10 7.251e-06 1.132e-05 3.443e-05 0.00% Gravity::set_mass_offset() 10 1.041e-05 1.414e-05 2.241e-05 0.00% Castro::FluxRegCrseInit 10 7.113e-06 8.284e-06 1.245e-05 0.00% Amr::initSubcycle() 1 9.921e-06 1.105e-05 1.174e-05 0.00% Gravity::swapTimeLevels() 10 8.824e-06 1.026e-05 1.164e-05 0.00% Castro::create_source_corrector() 10 7.007e-06 8.807e-06 1.16e-05 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.269e-06 2.876e-06 0.00% DistributionMapping::Distribute() 1 1.18e-06 1.402e-06 2.223e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 40 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-26-g34a5327e2fef) finalized