Initializing AMReX (v2024-30-g6e18c4232a10)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-30-g6e18c4232a10) initialized Starting run at 05:40:32 UTC on 2024-03-22. Successfully read inputs file ... Castro git describe: 24.03-26-g5707c0c2f AMReX git describe: v2024-30-g6e18c4232 Microphysics git describe: 24.03-21-g81de2adb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015565547 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359440807 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34970011 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337795507 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.371273592 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365077176 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313098 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.307372254 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309919333 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30961216 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308210088 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007730116 seconds Ending run at 05:40:36 UTC on 2024-03-22. Run time = 3.554844968 Run time without initialization = 3.344243322 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.554 ... 3.554 ... 3.555 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3436 2.3690 2.4210 68.10% Gravity::make_radial_gravity() 21 0.3022 0.3106 0.3206 9.02% Castro::initData() 1 0.04931 0.09557 0.1429 4.02% Castro::estTimeStep() 21 0.03565 0.08022 0.1225 3.45% check_for_negative_density() 10 0.02796 0.08387 0.112 3.15% amrex::Copy() 193 0.07245 0.07764 0.08506 2.39% FabArray::setVal() 143 0.06171 0.0696 0.08163 2.30% FabArray::ParallelCopy_finish() 41 0.0451 0.05865 0.07766 2.18% Castro::reset_internal_energy(Fab) 1008 0.04783 0.04856 0.05002 1.41% Castro::normalize_species() 62 0.04147 0.04277 0.04709 1.32% FabArray::ParallelCopy_nowait() 41 0.03504 0.04016 0.04181 1.18% StateData::FillBoundary(geom) 41 0.02998 0.03271 0.03646 1.03% FillPatchIterator::Initialize 41 0.02798 0.03244 0.03505 0.99% Gravity::interpolate_monopole_grav() 21 0.02753 0.02901 0.03007 0.85% Castro::construct_new_gravity_source() 10 0.02005 0.0237 0.02633 0.74% Castro::initialize_do_advance() 10 0.01238 0.0178 0.02064 0.58% Castro::computeTemp() 63 0.0188 0.01973 0.02051 0.58% Castro::initialize_advance() 10 0.009793 0.01152 0.01361 0.38% FabArray::Saxpy() 20 0.011 0.01195 0.013 0.37% VisMF::Write(FabArray) 2 0.009259 0.009915 0.01294 0.36% MultiFab::contains_nan() 20 0.009543 0.01057 0.01285 0.36% FabArray::setDomainBndry() 41 0.006745 0.01013 0.01217 0.34% Amr::writePlotFile() 2 0.007787 0.01088 0.01157 0.33% Castro::construct_old_gravity_source() 10 0.006815 0.009018 0.009717 0.27% Castro::initMFs() 1 0.006307 0.0071 0.007683 0.22% Castro::enforce_min_density() 62 0.005778 0.006051 0.006582 0.19% StateData::define() 4 0.005192 0.005887 0.00632 0.18% Castro::construct_new_source() 50 0.005579 0.005944 0.006164 0.17% Gravity::get_new_grav_vector() 11 0.003194 0.004257 0.00574 0.16% Castro::swap_state_time_levels() 10 0.002915 0.004136 0.004651 0.13% main() 1 0.003431 0.003714 0.004292 0.12% Amr::coarseTimeStep() 10 0.00127 0.00289 0.00354 0.10% Gravity::get_old_grav_vector() 10 0.001568 0.001983 0.002381 0.07% Castro::buildMetrics() 1 0.00147 0.001659 0.001937 0.05% Castro::finalize_do_advance() 10 0.0004366 0.0009942 0.001443 0.04% AmrLevel::FillPatch() 41 0.0007689 0.0009124 0.001002 0.03% Amr::InitAmr() 1 0.000373 0.0004062 0.0005284 0.01% Amr::timeStep() 10 0.000157 0.000205 0.0003771 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002776 0.000291 0.0003081 0.01% Castro::clean_state() 62 0.0001563 0.0001777 0.0002265 0.01% DistributionMapping::LeastUsedCPUs() 1 2.471e-05 0.0001394 0.0001732 0.00% Castro::do_advance_ctu() 10 0.0001325 0.0001472 0.0001597 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001077 0.0001211 0.0001496 0.00% StateDataPhysBCFunct::() 41 9.444e-05 0.0001047 0.0001199 0.00% Castro::finalize_advance() 10 9.664e-05 0.0001087 0.0001186 0.00% Castro::do_old_sources() 10 8.082e-05 9.496e-05 0.0001061 0.00% Castro::Castro() 1 7.65e-05 8.828e-05 0.0001019 0.00% Castro::enforce_consistent_e() 1 8.389e-05 9.187e-05 9.827e-05 0.00% Amr::FinalizeInit() 1 3.153e-06 1.813e-05 9.227e-05 0.00% FabArray::ParallelCopy() 41 7.564e-05 8.123e-05 9.142e-05 0.00% Castro::construct_old_source() 50 6.666e-05 7.794e-05 8.355e-05 0.00% FillPatchSingleLevel 41 6.839e-05 7.516e-05 8.109e-05 0.00% Castro::do_new_sources() 10 5.721e-05 6.273e-05 6.856e-05 0.00% FabArrayBase::getCPC() 41 5.196e-05 5.585e-05 6.401e-05 0.00% Castro::advance() 10 3.794e-05 4.704e-05 5.663e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 4.493e-05 5.639e-05 0.00% Castro::apply_source_to_state() 20 3.904e-05 4.275e-05 5.347e-05 0.00% Castro::subcycle_advance_ctu() 10 3.788e-05 4.32e-05 5.223e-05 0.00% Amr::defBaseLevel() 1 3.477e-05 3.898e-05 4.719e-05 0.00% Castro::construct_new_gravity() 10 3.427e-05 3.779e-05 4.666e-05 0.00% Castro::construct_old_gravity() 10 3.098e-05 3.688e-05 4.22e-05 0.00% FabArrayBase::CPC::define() 2 2.644e-05 3.128e-05 3.8e-05 0.00% Castro::enforce_speed_limit() 62 2.473e-05 2.748e-05 3.261e-05 0.00% Castro::check_for_nan() 20 2.125e-05 2.464e-05 2.914e-05 0.00% Castro::expand_state() 10 2.125e-05 2.4e-05 2.732e-05 0.00% Castro::post_timestep() 10 1.178e-05 1.373e-05 1.63e-05 0.00% Gravity::set_mass_offset() 10 9.817e-06 1.156e-05 1.418e-05 0.00% Gravity::swapTimeLevels() 10 9.046e-06 1.083e-05 1.302e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.524e-06 1.055e-05 1.291e-05 0.00% Amr::initSubcycle() 1 9.803e-06 1.091e-05 1.141e-05 0.00% Castro::create_source_corrector() 10 7.352e-06 8.323e-06 1.023e-05 0.00% Castro::computeNewDt() 9 8.164e-06 8.784e-06 1.013e-05 0.00% Castro::retry_advance_ctu() 10 6.3e-06 7.725e-06 9.729e-06 0.00% Castro::post_init() 1 2.245e-06 4.283e-06 9.49e-06 0.00% Castro::FluxRegCrseInit 10 6.926e-06 7.42e-06 7.895e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.842e-06 4.684e-06 6.59e-06 0.00% Amr::InitializeInit() 1 2.6e-06 3.527e-06 5.652e-06 0.00% Castro::computeInitialDt() 2 3.133e-06 3.959e-06 5.411e-06 0.00% Castro::post_regrid() 1 2.4e-06 3.548e-06 4.557e-06 0.00% Castro::FluxRegFineAdd() 10 1.949e-06 2.343e-06 3.357e-06 0.00% Amr::init() 1 1.848e-06 2.317e-06 3.159e-06 0.00% Amr::initialInit() 1 1.251e-06 1.853e-06 2.335e-06 0.00% DistributionMapping::Distribute() 1 9.75e-07 1.15e-06 1.237e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.554 3.554 3.555 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 93.74% Amr::timeStep() 10 3.318 3.319 3.32 93.40% Castro::advance() 10 3.302 3.303 3.304 92.93% Castro::subcycle_advance_ctu() 10 3.219 3.227 3.23 90.85% Castro::do_advance_ctu() 10 3.219 3.226 3.23 90.85% Castro::construct_ctu_hydro_source() 10 2.472 2.475 2.48 69.76% Gravity::make_radial_gravity() 21 0.318 0.3265 0.3354 9.43% Gravity::get_new_grav_vector() 11 0.213 0.2172 0.2197 6.18% AmrLevel::FillPatch() 41 0.1854 0.2061 0.2163 6.09% Amr::init() 1 0.2099 0.21 0.2101 5.91% Castro::construct_old_gravity() 10 0.1929 0.196 0.2056 5.78% Gravity::get_old_grav_vector() 10 0.1922 0.1954 0.205 5.77% Castro::construct_new_gravity() 10 0.189 0.1924 0.1948 5.48% Amr::initialInit() 1 0.194 0.1942 0.1944 5.47% FillPatchIterator::Initialize 41 0.1583 0.1746 0.1844 5.19% Castro::initialize_do_advance() 10 0.1551 0.1706 0.1762 4.96% Amr::InitializeInit() 1 0.06845 0.1165 0.1652 4.65% Amr::defBaseLevel() 1 0.06845 0.1165 0.1652 4.65% FillPatchIterator::FillFromLevel0() 41 0.1196 0.132 0.1497 4.21% FillPatchSingleLevel 41 0.1195 0.1319 0.1495 4.21% Castro::initData() 1 0.05361 0.09964 0.1472 4.14% Amr::FinalizeInit() 1 0.02875 0.07766 0.1257 3.54% Castro::expand_state() 10 0.09992 0.1164 0.125 3.52% Castro::estTimeStep() 21 0.03565 0.08022 0.1225 3.45% Castro::clean_state() 62 0.1143 0.1166 0.1225 3.45% FabArray::ParallelCopy() 41 0.08611 0.09898 0.1129 3.17% check_for_negative_density() 10 0.02796 0.08387 0.112 3.15% Castro::computeInitialDt() 2 0.00304 0.0517 0.09968 2.80% Castro::do_old_sources() 10 0.09065 0.09324 0.09578 2.69% amrex::Copy() 193 0.07245 0.07764 0.08506 2.39% FabArray::setVal() 143 0.06171 0.0696 0.08163 2.30% Castro::initialize_advance() 10 0.06899 0.07267 0.08004 2.25% FabArray::ParallelCopy_finish() 41 0.0451 0.05865 0.07766 2.18% Castro::do_new_sources() 10 0.054 0.0634 0.07091 1.99% Castro::computeTemp() 63 0.06744 0.06858 0.07075 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04811 0.04885 0.05032 1.42% Castro::reset_internal_energy(Fab) 1008 0.04783 0.04856 0.05002 1.41% Castro::normalize_species() 62 0.04147 0.04277 0.04709 1.32% FabArray::ParallelCopy_nowait() 41 0.03513 0.04025 0.04189 1.18% StateDataPhysBCFunct::() 41 0.03007 0.03282 0.03658 1.03% StateData::FillBoundary(geom) 41 0.02998 0.03271 0.03646 1.03% Castro::construct_new_source() 50 0.02563 0.02964 0.03213 0.90% Gravity::interpolate_monopole_grav() 21 0.02753 0.02901 0.03007 0.85% Castro::finalize_do_advance() 10 0.01211 0.02046 0.02881 0.81% Castro::construct_new_gravity_source() 10 0.02005 0.0237 0.02633 0.74% Castro::post_init() 1 0.02549 0.0259 0.02613 0.73% Amr::writePlotFile() 2 0.02345 0.02366 0.02391 0.67% Castro::post_timestep() 10 0.01536 0.01576 0.01621 0.46% Castro::apply_source_to_state() 20 0.01104 0.01199 0.01305 0.37% FabArray::Saxpy() 20 0.011 0.01195 0.013 0.37% VisMF::Write(FabArray) 2 0.009259 0.009915 0.01294 0.36% Castro::check_for_nan() 20 0.009572 0.0106 0.01288 0.36% MultiFab::contains_nan() 20 0.009543 0.01057 0.01285 0.36% FabArray::setDomainBndry() 41 0.006745 0.01013 0.01217 0.34% Castro::Castro() 1 0.00951 0.01082 0.01185 0.33% Castro::construct_old_source() 50 0.006881 0.009096 0.009794 0.28% Castro::construct_old_gravity_source() 10 0.006815 0.009018 0.009717 0.27% Castro::computeNewDt() 9 0.009057 0.009066 0.009076 0.26% Castro::initMFs() 1 0.006307 0.0071 0.007683 0.22% Castro::enforce_min_density() 62 0.005778 0.006051 0.006582 0.19% AmrLevel::AmrLevel(dm) 1 0.005204 0.005898 0.006331 0.18% StateData::define() 4 0.005192 0.005887 0.00632 0.18% Castro::swap_state_time_levels() 10 0.002915 0.004136 0.004651 0.13% Castro::finalize_advance() 10 0.003032 0.003472 0.004219 0.12% Castro::post_regrid() 1 0.001538 0.001723 0.002123 0.06% Castro::buildMetrics() 1 0.001581 0.001796 0.002098 0.06% Amr::InitAmr() 1 0.0003834 0.0004171 0.0005382 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 2.953e-05 0.0001452 0.0001786 0.01% DistributionMapping::LeastUsedCPUs() 1 2.471e-05 0.0001394 0.0001732 0.00% FabArrayBase::getCPC() 41 8.163e-05 8.713e-05 9.894e-05 0.00% Castro::enforce_consistent_e() 1 8.389e-05 9.187e-05 9.827e-05 0.00% Amr::writeSmallPlotFile() 1 2.927e-05 4.493e-05 5.639e-05 0.00% FabArrayBase::CPC::define() 2 2.644e-05 3.128e-05 3.8e-05 0.00% Castro::enforce_speed_limit() 62 2.473e-05 2.748e-05 3.261e-05 0.00% Gravity::set_mass_offset() 10 9.817e-06 1.156e-05 1.418e-05 0.00% Gravity::swapTimeLevels() 10 9.046e-06 1.083e-05 1.302e-05 0.00% Amr::initSubcycle() 1 9.803e-06 1.091e-05 1.141e-05 0.00% Castro::create_source_corrector() 10 7.352e-06 8.323e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 6.3e-06 7.725e-06 9.729e-06 0.00% Castro::FluxRegCrseInit 10 6.926e-06 7.42e-06 7.895e-06 0.00% Castro::FluxRegFineAdd() 10 1.949e-06 2.343e-06 3.357e-06 0.00% DistributionMapping::Distribute() 1 9.75e-07 1.15e-06 1.237e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 38 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-30-g6e18c4232a10) finalized