Initializing AMReX (v2024-32-g33701ffd5611)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-32-g33701ffd5611) initialized Starting run at 14:14:38 UTC on 2024-03-24. Successfully read inputs file ... Castro git describe: 24.03-26-g5707c0c2f AMReX git describe: v2024-32-g33701ffd5 Microphysics git describe: 24.03-21-g81de2adb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014773904 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351771965 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.364271632 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339710218 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.347863057 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369701178 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.307214222 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.304323043 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.305007513 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.304743214 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306626904 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007756597 seconds Ending run at 14:14:42 UTC on 2024-03-24. Run time = 3.512291816 Run time without initialization = 3.313570441 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.512 ... 3.512 ... 3.512 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2836 2.3237 2.3872 67.97% Gravity::make_radial_gravity() 21 0.3032 0.3194 0.3293 9.38% Castro::initData() 1 0.04855 0.09524 0.1344 3.83% Castro::estTimeStep() 21 0.02526 0.07306 0.1269 3.61% check_for_negative_density() 10 0.01552 0.08207 0.1261 3.59% amrex::Copy() 193 0.06783 0.07759 0.0879 2.50% FabArray::setVal() 143 0.06532 0.07207 0.08154 2.32% FabArray::ParallelCopy_finish() 41 0.04895 0.06344 0.07241 2.06% Castro::reset_internal_energy(Fab) 1008 0.04197 0.04579 0.05126 1.46% Castro::normalize_species() 62 0.04127 0.04268 0.04367 1.24% FabArray::ParallelCopy_nowait() 41 0.0344 0.03896 0.04121 1.17% FillPatchIterator::Initialize 41 0.02927 0.03349 0.0361 1.03% StateData::FillBoundary(geom) 41 0.02796 0.03071 0.03246 0.92% Gravity::interpolate_monopole_grav() 21 0.02839 0.02981 0.03077 0.88% Castro::construct_new_gravity_source() 10 0.02303 0.02497 0.02805 0.80% Castro::computeTemp() 63 0.01695 0.01873 0.02053 0.58% Castro::initialize_do_advance() 10 0.014 0.0174 0.0199 0.57% FabArray::setDomainBndry() 41 0.008387 0.01226 0.01468 0.42% FabArray::Saxpy() 20 0.0109 0.01237 0.01335 0.38% MultiFab::contains_nan() 20 0.009412 0.01057 0.01321 0.38% Castro::initialize_advance() 10 0.009664 0.01127 0.01313 0.37% VisMF::Write(FabArray) 2 0.008917 0.009513 0.01198 0.34% Amr::writePlotFile() 2 0.007858 0.01028 0.01105 0.31% Castro::construct_old_gravity_source() 10 0.006474 0.008808 0.009515 0.27% Castro::initMFs() 1 0.006488 0.007273 0.007811 0.22% StateData::define() 4 0.005365 0.006093 0.006661 0.19% Castro::enforce_min_density() 62 0.005537 0.005897 0.006306 0.18% Castro::construct_new_source() 50 0.005566 0.00585 0.006033 0.17% Castro::swap_state_time_levels() 10 0.003005 0.004271 0.005353 0.15% main() 1 0.003577 0.003806 0.003916 0.11% Amr::coarseTimeStep() 10 0.00133 0.002852 0.003829 0.11% Gravity::get_old_grav_vector() 10 0.00164 0.002207 0.003804 0.11% Gravity::get_new_grav_vector() 11 0.002892 0.003354 0.003644 0.10% Castro::buildMetrics() 1 0.001543 0.001713 0.001874 0.05% AmrLevel::FillPatch() 41 0.0007673 0.0009237 0.001118 0.03% Castro::finalize_do_advance() 10 0.0004364 0.0008686 0.001095 0.03% Amr::InitAmr() 1 0.0003493 0.000402 0.0005658 0.02% Amr::timeStep() 10 0.0001763 0.0002253 0.000398 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002763 0.000304 0.0003795 0.01% DistributionMapping::LeastUsedCPUs() 1 2.605e-05 0.0001909 0.0002398 0.01% Castro::do_advance_ctu() 10 0.0001489 0.000179 0.0002099 0.01% Castro::clean_state() 62 0.0001379 0.0001605 0.0001761 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001103 0.0001202 0.0001328 0.00% Castro::finalize_advance() 10 9.912e-05 0.0001122 0.0001268 0.00% Amr::FinalizeInit() 1 4.332e-06 1.944e-05 0.0001185 0.00% StateDataPhysBCFunct::() 41 9.974e-05 0.0001085 0.0001143 0.00% Castro::do_old_sources() 10 8.593e-05 9.336e-05 0.0001066 0.00% Castro::Castro() 1 7.563e-05 8.942e-05 0.0001061 0.00% FabArray::ParallelCopy() 41 7.884e-05 9.011e-05 9.896e-05 0.00% FillPatchSingleLevel 41 7.719e-05 8.553e-05 9.378e-05 0.00% Castro::enforce_consistent_e() 1 7.489e-05 8.622e-05 9.313e-05 0.00% Castro::construct_old_source() 50 6.791e-05 7.459e-05 8.584e-05 0.00% FabArrayBase::getCPC() 41 5.321e-05 6.185e-05 7.276e-05 0.00% Castro::do_new_sources() 10 5.242e-05 6.082e-05 6.617e-05 0.00% Castro::subcycle_advance_ctu() 10 4.198e-05 4.67e-05 5.476e-05 0.00% Castro::advance() 10 3.742e-05 4.527e-05 5.367e-05 0.00% Amr::writeSmallPlotFile() 1 3.413e-05 4.565e-05 5.329e-05 0.00% Castro::construct_new_gravity() 10 3.439e-05 4.126e-05 5.277e-05 0.00% Amr::defBaseLevel() 1 4.155e-05 4.448e-05 5.129e-05 0.00% Castro::apply_source_to_state() 20 4.083e-05 4.428e-05 4.831e-05 0.00% Castro::construct_old_gravity() 10 3.378e-05 3.976e-05 4.821e-05 0.00% FabArrayBase::CPC::define() 2 2.743e-05 3.038e-05 3.718e-05 0.00% Castro::check_for_nan() 20 2.088e-05 2.28e-05 3.219e-05 0.00% Castro::expand_state() 10 2.198e-05 2.465e-05 2.791e-05 0.00% Castro::enforce_speed_limit() 62 2.163e-05 2.496e-05 2.712e-05 0.00% Castro::post_init() 1 9.177e-06 1.192e-05 2.388e-05 0.00% Castro::post_timestep() 10 1.238e-05 1.483e-05 1.643e-05 0.00% Castro::create_source_corrector() 10 6.386e-06 9.381e-06 1.631e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.214e-06 1.088e-05 1.523e-05 0.00% Gravity::set_mass_offset() 10 1.061e-05 1.239e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 1.022e-05 1.177e-05 1.303e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.127e-05 1.155e-05 0.00% Castro::computeNewDt() 9 7.464e-06 8.537e-06 1.025e-05 0.00% Castro::retry_advance_ctu() 10 6.779e-06 8.193e-06 9.918e-06 0.00% Castro::FluxRegCrseInit 10 6.71e-06 7.626e-06 9.614e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.954e-06 4.952e-06 8.29e-06 0.00% Amr::InitializeInit() 1 2.868e-06 3.591e-06 6.052e-06 0.00% Castro::post_regrid() 1 1.888e-06 2.967e-06 4.019e-06 0.00% Castro::computeInitialDt() 2 3.217e-06 3.506e-06 3.909e-06 0.00% Amr::init() 1 1.974e-06 2.432e-06 3.188e-06 0.00% Castro::FluxRegFineAdd() 10 2.167e-06 2.524e-06 3.015e-06 0.00% Amr::initialInit() 1 1.464e-06 2.038e-06 2.809e-06 0.00% DistributionMapping::Distribute() 1 1.092e-06 1.233e-06 1.439e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.512 3.512 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 94.01% Amr::timeStep() 10 3.288 3.289 3.29 93.68% Castro::advance() 10 3.273 3.273 3.275 93.23% Castro::subcycle_advance_ctu() 10 3.187 3.196 3.201 91.15% Castro::do_advance_ctu() 10 3.187 3.196 3.201 91.15% Castro::construct_ctu_hydro_source() 10 2.423 2.426 2.43 69.19% Gravity::make_radial_gravity() 21 0.3194 0.3352 0.3442 9.80% Gravity::get_new_grav_vector() 11 0.2194 0.2209 0.2226 6.34% AmrLevel::FillPatch() 41 0.1962 0.2105 0.2214 6.30% Castro::construct_old_gravity() 10 0.1912 0.2038 0.212 6.04% Gravity::get_old_grav_vector() 10 0.1902 0.2029 0.2109 6.00% Castro::construct_new_gravity() 10 0.1961 0.1973 0.1986 5.65% Amr::init() 1 0.198 0.1981 0.1982 5.64% FillPatchIterator::Initialize 41 0.167 0.1794 0.1882 5.36% Castro::initialize_do_advance() 10 0.1539 0.1703 0.1867 5.31% Amr::initialInit() 1 0.183 0.1832 0.1834 5.22% Amr::InitializeInit() 1 0.06712 0.1166 0.1559 4.44% Amr::defBaseLevel() 1 0.06712 0.1166 0.1559 4.44% FillPatchIterator::FillFromLevel0() 41 0.119 0.1336 0.1401 3.99% FillPatchSingleLevel 41 0.1189 0.1335 0.1399 3.98% Castro::initData() 1 0.05203 0.09907 0.1383 3.94% Castro::estTimeStep() 21 0.02526 0.07306 0.1269 3.61% check_for_negative_density() 10 0.01552 0.08207 0.1261 3.59% Castro::expand_state() 10 0.1031 0.116 0.1255 3.57% Castro::clean_state() 62 0.1067 0.1127 0.1209 3.44% Amr::FinalizeInit() 1 0.02723 0.06668 0.1163 3.31% FabArray::ParallelCopy() 41 0.08843 0.1026 0.1094 3.11% Castro::do_old_sources() 10 0.09245 0.09503 0.09823 2.80% Castro::computeInitialDt() 2 0.002308 0.04164 0.09114 2.59% amrex::Copy() 193 0.06783 0.07759 0.0879 2.50% Castro::initialize_advance() 10 0.06866 0.07362 0.08183 2.33% FabArray::setVal() 143 0.06532 0.07207 0.08154 2.32% Castro::do_new_sources() 10 0.06062 0.06529 0.07395 2.11% FabArray::ParallelCopy_finish() 41 0.04895 0.06344 0.07241 2.06% Castro::computeTemp() 63 0.05919 0.06482 0.07217 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04225 0.04609 0.05164 1.47% Castro::reset_internal_energy(Fab) 1008 0.04197 0.04579 0.05126 1.46% Castro::normalize_species() 62 0.04127 0.04268 0.04367 1.24% FabArray::ParallelCopy_nowait() 41 0.03451 0.03906 0.04129 1.18% Castro::construct_new_source() 50 0.0289 0.03082 0.034 0.97% StateDataPhysBCFunct::() 41 0.02807 0.03082 0.03256 0.93% StateData::FillBoundary(geom) 41 0.02796 0.03071 0.03246 0.92% Gravity::interpolate_monopole_grav() 21 0.02839 0.02981 0.03077 0.88% Castro::construct_new_gravity_source() 10 0.02303 0.02497 0.02805 0.80% Castro::finalize_do_advance() 10 0.0144 0.02309 0.02775 0.79% Castro::post_init() 1 0.02432 0.02458 0.02472 0.70% Amr::writePlotFile() 2 0.0226 0.02273 0.02296 0.65% Castro::post_timestep() 10 0.01432 0.01514 0.01577 0.45% FabArray::setDomainBndry() 41 0.008387 0.01226 0.01468 0.42% Castro::apply_source_to_state() 20 0.01094 0.01241 0.0134 0.38% FabArray::Saxpy() 20 0.0109 0.01237 0.01335 0.38% Castro::check_for_nan() 20 0.009434 0.01059 0.01324 0.38% MultiFab::contains_nan() 20 0.009412 0.01057 0.01321 0.38% VisMF::Write(FabArray) 2 0.008917 0.009513 0.01198 0.34% Castro::Castro() 1 0.009425 0.01116 0.0119 0.34% Castro::construct_old_source() 50 0.006543 0.008883 0.009601 0.27% Castro::construct_old_gravity_source() 10 0.006474 0.008808 0.009515 0.27% Castro::computeNewDt() 9 0.009196 0.009212 0.009226 0.26% Castro::initMFs() 1 0.006488 0.007273 0.007811 0.22% AmrLevel::AmrLevel(dm) 1 0.005374 0.006104 0.006674 0.19% StateData::define() 4 0.005365 0.006093 0.006661 0.19% Castro::enforce_min_density() 62 0.005537 0.005897 0.006306 0.18% Castro::swap_state_time_levels() 10 0.003005 0.004271 0.005353 0.15% Castro::finalize_advance() 10 0.003071 0.003469 0.004385 0.12% Castro::buildMetrics() 1 0.001655 0.001852 0.002038 0.06% Castro::post_regrid() 1 0.001499 0.001586 0.001684 0.05% Amr::InitAmr() 1 0.0003606 0.0004133 0.0005774 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.123e-05 0.0001971 0.0002471 0.01% DistributionMapping::LeastUsedCPUs() 1 2.605e-05 0.0001909 0.0002398 0.01% FabArrayBase::getCPC() 41 8.099e-05 9.223e-05 0.0001062 0.00% Castro::enforce_consistent_e() 1 7.489e-05 8.622e-05 9.313e-05 0.00% Amr::writeSmallPlotFile() 1 3.413e-05 4.565e-05 5.329e-05 0.00% FabArrayBase::CPC::define() 2 2.743e-05 3.038e-05 3.718e-05 0.00% Castro::enforce_speed_limit() 62 2.163e-05 2.496e-05 2.712e-05 0.00% Castro::create_source_corrector() 10 6.386e-06 9.381e-06 1.631e-05 0.00% Gravity::set_mass_offset() 10 1.061e-05 1.239e-05 1.377e-05 0.00% Gravity::swapTimeLevels() 10 1.022e-05 1.177e-05 1.303e-05 0.00% Amr::initSubcycle() 1 1.009e-05 1.127e-05 1.155e-05 0.00% Castro::retry_advance_ctu() 10 6.779e-06 8.193e-06 9.918e-06 0.00% Castro::FluxRegCrseInit 10 6.71e-06 7.626e-06 9.614e-06 0.00% Castro::FluxRegFineAdd() 10 2.167e-06 2.524e-06 3.015e-06 0.00% DistributionMapping::Distribute() 1 1.092e-06 1.233e-06 1.439e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 39 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-32-g33701ffd5611) finalized