Initializing AMReX (v2024-32-g33701ffd5611)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-32-g33701ffd5611) initialized Starting run at 05:31:11 UTC on 2024-03-25. Successfully read inputs file ... Castro git describe: 24.03-26-g5707c0c2f AMReX git describe: v2024-32-g33701ffd5 Microphysics git describe: 24.03-21-g81de2adb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014174238 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346314663 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344474809 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.322474243 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325073815 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371217295 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313428803 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.305654489 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.305949378 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.306500651 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307587777 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007539824 seconds Ending run at 05:31:15 UTC on 2024-03-25. Run time = 3.459091756 Run time without initialization = 3.261136785 Average number of zones advanced per microsecond: 0.804 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.458 ... 3.459 ... 3.459 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2696 2.3114 2.3676 68.44% Gravity::make_radial_gravity() 21 0.2905 0.3008 0.3206 9.27% Castro::initData() 1 0.05903 0.09502 0.1351 3.91% check_for_negative_density() 10 0.01876 0.0782 0.1138 3.29% FabArray::ParallelCopy_finish() 41 0.044 0.05838 0.1061 3.07% Castro::estTimeStep() 21 0.02271 0.06815 0.1028 2.97% amrex::Copy() 193 0.06724 0.08108 0.09752 2.82% FabArray::setVal() 143 0.05289 0.06595 0.0739 2.14% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04689 0.05215 1.51% Castro::normalize_species() 62 0.0408 0.04389 0.05062 1.46% FabArray::ParallelCopy_nowait() 41 0.03296 0.03816 0.03952 1.14% StateData::FillBoundary(geom) 41 0.02895 0.03184 0.03586 1.04% FillPatchIterator::Initialize 41 0.02618 0.03067 0.03291 0.95% Gravity::interpolate_monopole_grav() 21 0.0276 0.02944 0.03136 0.91% Castro::construct_new_gravity_source() 10 0.02237 0.02334 0.02462 0.71% Castro::computeTemp() 63 0.01769 0.01915 0.02077 0.60% Castro::initialize_do_advance() 10 0.0112 0.01633 0.01769 0.51% MultiFab::contains_nan() 20 0.009955 0.01146 0.01421 0.41% FabArray::setDomainBndry() 41 0.008443 0.01137 0.01369 0.40% Castro::initialize_advance() 10 0.00526 0.01036 0.01322 0.38% FabArray::Saxpy() 20 0.01028 0.01168 0.01282 0.37% Amr::writePlotFile() 2 0.00763 0.0101 0.01175 0.34% VisMF::Write(FabArray) 2 0.008648 0.00923 0.01167 0.34% Castro::construct_old_gravity_source() 10 0.0063 0.008305 0.008964 0.26% Castro::initMFs() 1 0.006354 0.007188 0.007682 0.22% Castro::enforce_min_density() 62 0.007005 0.007312 0.007673 0.22% Castro::construct_new_source() 50 0.005678 0.006112 0.006493 0.19% StateData::define() 4 0.005241 0.005836 0.006132 0.18% main() 1 0.003435 0.003842 0.004276 0.12% Castro::swap_state_time_levels() 10 0.002719 0.003745 0.004094 0.12% Gravity::get_new_grav_vector() 11 0.002758 0.003237 0.003609 0.10% Amr::coarseTimeStep() 10 0.0009113 0.001726 0.002513 0.07% Gravity::get_old_grav_vector() 10 0.001543 0.002023 0.002429 0.07% Castro::buildMetrics() 1 0.001519 0.001676 0.001901 0.05% Castro::finalize_do_advance() 10 0.0004325 0.0009309 0.001057 0.03% AmrLevel::FillPatch() 41 0.0006868 0.0009275 0.001043 0.03% Amr::InitAmr() 1 0.0003495 0.000404 0.00058 0.02% Amr::timeStep() 10 0.0001721 0.000224 0.0004138 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003021 0.0003121 0.0003256 0.01% DistributionMapping::LeastUsedCPUs() 1 3.047e-05 0.0002071 0.0002605 0.01% Castro::do_advance_ctu() 10 0.0001554 0.0001747 0.0002077 0.01% Castro::clean_state() 62 0.0001441 0.0001633 0.000183 0.01% StateDataPhysBCFunct::() 41 9.769e-05 0.0001147 0.0001449 0.00% Castro::finalize_advance() 10 0.0001044 0.0001152 0.0001274 0.00% FillPatchIterator::FillFromLevel0() 41 9.801e-05 0.0001104 0.0001258 0.00% Castro::Castro() 1 8.604e-05 9.685e-05 0.0001043 0.00% Castro::do_old_sources() 10 6.839e-05 8.521e-05 0.0001005 0.00% FabArray::ParallelCopy() 41 7.445e-05 8.28e-05 9.62e-05 0.00% Amr::FinalizeInit() 1 4.004e-06 1.699e-05 9.556e-05 0.00% Castro::enforce_consistent_e() 1 7.91e-05 8.502e-05 9.483e-05 0.00% FillPatchSingleLevel 41 7.44e-05 8.141e-05 9.198e-05 0.00% Castro::construct_old_source() 50 4.721e-05 6.469e-05 8.03e-05 0.00% FabArrayBase::getCPC() 41 5.196e-05 5.986e-05 7.363e-05 0.00% Castro::do_new_sources() 10 4.724e-05 5.813e-05 6.428e-05 0.00% Castro::construct_old_gravity() 10 2.956e-05 4.305e-05 6.169e-05 0.00% Castro::advance() 10 3.454e-05 4.545e-05 5.701e-05 0.00% Amr::writeSmallPlotFile() 1 3.21e-05 4.817e-05 5.617e-05 0.00% Castro::apply_source_to_state() 20 3.44e-05 4.388e-05 5.396e-05 0.00% Amr::defBaseLevel() 1 4.1e-05 4.535e-05 5.058e-05 0.00% Castro::subcycle_advance_ctu() 10 3.924e-05 4.35e-05 4.802e-05 0.00% Castro::construct_new_gravity() 10 3.4e-05 3.824e-05 4.285e-05 0.00% FabArrayBase::CPC::define() 2 2.659e-05 2.967e-05 3.177e-05 0.00% Castro::enforce_speed_limit() 62 2.389e-05 2.575e-05 2.914e-05 0.00% Castro::expand_state() 10 2.215e-05 2.494e-05 2.741e-05 0.00% Castro::check_for_nan() 20 1.964e-05 2.175e-05 2.411e-05 0.00% Castro::post_timestep() 10 1.208e-05 1.462e-05 1.62e-05 0.00% Gravity::swapTimeLevels() 10 9.128e-06 1.16e-05 1.442e-05 0.00% Gravity::set_mass_offset() 10 1.022e-05 1.213e-05 1.442e-05 0.00% Castro::create_source_corrector() 10 6.813e-06 9.041e-06 1.355e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.654e-06 1.106e-05 1.316e-05 0.00% Amr::initSubcycle() 1 1.068e-05 1.152e-05 1.193e-05 0.00% Castro::post_init() 1 8.351e-06 9.5e-06 1.185e-05 0.00% Castro::computeNewDt() 9 8.218e-06 9.684e-06 1.151e-05 0.00% Castro::retry_advance_ctu() 10 6.54e-06 7.586e-06 9.624e-06 0.00% Castro::FluxRegCrseInit 10 6.368e-06 7.599e-06 8.573e-06 0.00% Castro::post_regrid() 1 1.978e-06 3.892e-06 8.205e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.002e-06 5.135e-06 7.885e-06 0.00% Amr::InitializeInit() 1 3.023e-06 3.585e-06 6.17e-06 0.00% Castro::computeInitialDt() 2 2.509e-06 3.592e-06 4.965e-06 0.00% Castro::FluxRegFineAdd() 10 2.022e-06 2.421e-06 3.361e-06 0.00% Amr::init() 1 2.134e-06 2.41e-06 2.914e-06 0.00% Amr::initialInit() 1 1.394e-06 1.846e-06 2.846e-06 0.00% DistributionMapping::Distribute() 1 1.144e-06 1.273e-06 1.434e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.458 3.459 3.459 100.00% Amr::coarseTimeStep() 10 3.249 3.249 3.249 93.94% Amr::timeStep() 10 3.237 3.238 3.238 93.62% Castro::advance() 10 3.221 3.222 3.222 93.15% Castro::subcycle_advance_ctu() 10 3.146 3.151 3.164 91.48% Castro::do_advance_ctu() 10 3.146 3.151 3.164 91.47% Castro::construct_ctu_hydro_source() 10 2.404 2.41 2.415 69.81% Gravity::make_radial_gravity() 21 0.3063 0.3189 0.3336 9.64% AmrLevel::FillPatch() 41 0.184 0.2034 0.232 6.71% Castro::construct_old_gravity() 10 0.1878 0.1994 0.2122 6.13% Gravity::get_old_grav_vector() 10 0.1867 0.1987 0.2116 6.12% Gravity::get_new_grav_vector() 11 0.2045 0.2057 0.2075 6.00% FillPatchIterator::Initialize 41 0.1558 0.1709 0.2031 5.87% Amr::init() 1 0.1972 0.1974 0.1974 5.71% Castro::construct_new_gravity() 10 0.1821 0.1831 0.1845 5.33% Amr::initialInit() 1 0.1827 0.1831 0.1833 5.30% Castro::initialize_do_advance() 10 0.1581 0.1647 0.1748 5.05% FillPatchIterator::FillFromLevel0() 41 0.1147 0.1289 0.1685 4.87% FillPatchSingleLevel 41 0.1146 0.1288 0.1684 4.87% Amr::InitializeInit() 1 0.08101 0.1162 0.1568 4.53% Amr::defBaseLevel() 1 0.081 0.1162 0.1568 4.53% FabArray::ParallelCopy() 41 0.08314 0.09672 0.1392 4.03% Castro::initData() 1 0.06305 0.0989 0.1387 4.01% Castro::clean_state() 62 0.1093 0.1168 0.1308 3.78% Castro::expand_state() 10 0.09582 0.1083 0.12 3.47% check_for_negative_density() 10 0.01876 0.0782 0.1138 3.29% Castro::do_old_sources() 10 0.09458 0.09844 0.108 3.12% FabArray::ParallelCopy_finish() 41 0.044 0.05838 0.1061 3.07% Castro::estTimeStep() 21 0.02271 0.06815 0.1028 2.97% Amr::FinalizeInit() 1 0.02644 0.06689 0.1018 2.94% amrex::Copy() 193 0.06724 0.08108 0.09752 2.82% Castro::computeInitialDt() 2 0.002278 0.04283 0.07783 2.25% FabArray::setVal() 143 0.05289 0.06595 0.0739 2.14% Castro::computeTemp() 63 0.06183 0.06635 0.07323 2.12% Castro::initialize_advance() 10 0.05385 0.06759 0.07273 2.10% Castro::do_new_sources() 10 0.05713 0.06135 0.06632 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04401 0.0472 0.05247 1.52% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04689 0.05215 1.51% Castro::normalize_species() 62 0.0408 0.04389 0.05062 1.46% FabArray::ParallelCopy_nowait() 41 0.03304 0.03825 0.0396 1.14% StateDataPhysBCFunct::() 41 0.0291 0.03196 0.03596 1.04% StateData::FillBoundary(geom) 41 0.02895 0.03184 0.03586 1.04% Gravity::interpolate_monopole_grav() 21 0.0276 0.02944 0.03136 0.91% Castro::construct_new_source() 50 0.02834 0.02945 0.03111 0.90% Castro::construct_new_gravity_source() 10 0.02237 0.02334 0.02462 0.71% Castro::post_init() 1 0.02318 0.02365 0.02384 0.69% Amr::writePlotFile() 2 0.02177 0.02191 0.02229 0.64% Castro::finalize_do_advance() 10 0.01249 0.01731 0.02086 0.60% Castro::post_timestep() 10 0.01491 0.01546 0.01607 0.46% Castro::check_for_nan() 20 0.009977 0.01148 0.01423 0.41% MultiFab::contains_nan() 20 0.009955 0.01146 0.01421 0.41% FabArray::setDomainBndry() 41 0.008443 0.01137 0.01369 0.40% Castro::apply_source_to_state() 20 0.01032 0.01172 0.01287 0.37% FabArray::Saxpy() 20 0.01028 0.01168 0.01282 0.37% Castro::Castro() 1 0.009269 0.01119 0.01204 0.35% VisMF::Write(FabArray) 2 0.008648 0.00923 0.01167 0.34% Castro::construct_old_source() 50 0.006347 0.00837 0.009044 0.26% Castro::construct_old_gravity_source() 10 0.0063 0.008305 0.008964 0.26% Castro::computeNewDt() 9 0.008933 0.008947 0.00896 0.26% Castro::initMFs() 1 0.006354 0.007188 0.007682 0.22% Castro::enforce_min_density() 62 0.007005 0.007312 0.007673 0.22% AmrLevel::AmrLevel(dm) 1 0.005251 0.005847 0.006144 0.18% StateData::define() 4 0.005241 0.005836 0.006132 0.18% Castro::swap_state_time_levels() 10 0.002719 0.003745 0.004094 0.12% Castro::finalize_advance() 10 0.003121 0.003247 0.003402 0.10% Castro::buildMetrics() 1 0.001631 0.001816 0.002053 0.06% Castro::post_regrid() 1 0.001459 0.00154 0.001645 0.05% Amr::InitAmr() 1 0.0003606 0.0004156 0.0005918 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.591e-05 0.0002135 0.0002682 0.01% DistributionMapping::LeastUsedCPUs() 1 3.047e-05 0.0002071 0.0002605 0.01% FabArrayBase::getCPC() 41 7.93e-05 8.954e-05 0.0001054 0.00% Castro::enforce_consistent_e() 1 7.91e-05 8.502e-05 9.483e-05 0.00% Amr::writeSmallPlotFile() 1 3.21e-05 4.817e-05 5.617e-05 0.00% FabArrayBase::CPC::define() 2 2.659e-05 2.967e-05 3.177e-05 0.00% Castro::enforce_speed_limit() 62 2.389e-05 2.575e-05 2.914e-05 0.00% Gravity::swapTimeLevels() 10 9.128e-06 1.16e-05 1.442e-05 0.00% Gravity::set_mass_offset() 10 1.022e-05 1.213e-05 1.442e-05 0.00% Castro::create_source_corrector() 10 6.813e-06 9.041e-06 1.355e-05 0.00% Amr::initSubcycle() 1 1.068e-05 1.152e-05 1.193e-05 0.00% Castro::retry_advance_ctu() 10 6.54e-06 7.586e-06 9.624e-06 0.00% Castro::FluxRegCrseInit 10 6.368e-06 7.599e-06 8.573e-06 0.00% Castro::FluxRegFineAdd() 10 2.022e-06 2.421e-06 3.361e-06 0.00% DistributionMapping::Distribute() 1 1.144e-06 1.273e-06 1.434e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 46 B 80 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-32-g33701ffd5611) finalized