Initializing AMReX (v2024-34-g9e8f8d60eca3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-34-g9e8f8d60eca3) initialized Starting run at 05:40:39 UTC on 2024-03-26. Successfully read inputs file ... Castro git describe: 24.03-26-g5707c0c2f AMReX git describe: v2024-34-g9e8f8d60e Microphysics git describe: 24.03-21-g81de2adb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014547628 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358521524 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349230257 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331065344 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.357092307 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36681454 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.314234423 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313367657 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312880139 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313954294 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313157608 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007589716 seconds Ending run at 05:40:42 UTC on 2024-03-26. Run time = 3.540661523 Run time without initialization = 3.342917289 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.54 ... 3.54 ... 3.541 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3366 2.3709 2.4265 68.53% Gravity::make_radial_gravity() 21 0.2915 0.2991 0.3124 8.82% Castro::estTimeStep() 21 0.03989 0.08108 0.1381 3.90% Castro::initData() 1 0.04875 0.09251 0.1346 3.80% check_for_negative_density() 10 0.02601 0.08293 0.1165 3.29% FabArray::ParallelCopy_finish() 41 0.05481 0.06934 0.1021 2.88% amrex::Copy() 193 0.06073 0.07667 0.08475 2.39% FabArray::setVal() 143 0.05963 0.06722 0.07972 2.25% Castro::reset_internal_energy(Fab) 1008 0.04507 0.04796 0.0498 1.41% Castro::normalize_species() 62 0.04182 0.04279 0.04348 1.23% FabArray::ParallelCopy_nowait() 41 0.03359 0.03876 0.0402 1.14% FillPatchIterator::Initialize 41 0.02797 0.03184 0.03509 0.99% StateData::FillBoundary(geom) 41 0.03069 0.03196 0.03382 0.96% Gravity::interpolate_monopole_grav() 21 0.02809 0.02972 0.03303 0.93% Castro::construct_new_gravity_source() 10 0.02163 0.02408 0.02994 0.85% Castro::computeTemp() 63 0.01726 0.01947 0.02024 0.57% Castro::initialize_do_advance() 10 0.01304 0.01626 0.02022 0.57% MultiFab::contains_nan() 20 0.009351 0.01045 0.01327 0.37% FabArray::Saxpy() 20 0.01148 0.01211 0.0129 0.36% Amr::writePlotFile() 2 0.007621 0.01055 0.01264 0.36% Castro::initialize_advance() 10 0.005441 0.01001 0.01237 0.35% VisMF::Write(FabArray) 2 0.008472 0.009353 0.01207 0.34% FabArray::setDomainBndry() 41 0.007565 0.009676 0.01171 0.33% Castro::construct_old_gravity_source() 10 0.006524 0.008648 0.009424 0.27% Castro::initMFs() 1 0.006456 0.007245 0.007984 0.23% StateData::define() 4 0.005307 0.005951 0.006605 0.19% Castro::enforce_min_density() 62 0.005583 0.005912 0.006442 0.18% Castro::construct_new_source() 50 0.005429 0.005947 0.00624 0.18% Castro::swap_state_time_levels() 10 0.002676 0.003771 0.004198 0.12% main() 1 0.003193 0.003647 0.004191 0.12% Gravity::get_new_grav_vector() 11 0.00283 0.003342 0.003714 0.10% Amr::coarseTimeStep() 10 0.001855 0.002378 0.003386 0.10% Gravity::get_old_grav_vector() 10 0.001475 0.001979 0.002547 0.07% Castro::buildMetrics() 1 0.001472 0.001709 0.001926 0.05% AmrLevel::FillPatch() 41 0.0006497 0.00101 0.001189 0.03% Castro::finalize_do_advance() 10 0.000394 0.0009386 0.00112 0.03% Amr::InitAmr() 1 0.0003636 0.0004282 0.0006427 0.02% Amr::timeStep() 10 0.0001606 0.0002275 0.0005387 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002702 0.000288 0.0003107 0.01% DistributionMapping::LeastUsedCPUs() 1 3.273e-05 0.0002304 0.0003048 0.01% Castro::clean_state() 62 0.0001367 0.0001532 0.0001811 0.01% Castro::do_advance_ctu() 10 0.0001403 0.0001515 0.0001769 0.00% StateDataPhysBCFunct::() 41 0.0001023 0.0001322 0.0001634 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001047 0.000124 0.0001442 0.00% Castro::finalize_advance() 10 9.053e-05 0.0001088 0.0001155 0.00% Castro::Castro() 1 7.541e-05 8.707e-05 0.0001103 0.00% Castro::do_new_sources() 10 5.097e-05 6.842e-05 0.0001068 0.00% Castro::enforce_consistent_e() 1 7.828e-05 9.037e-05 0.0001066 0.00% Castro::do_old_sources() 10 7.181e-05 8.944e-05 0.0001054 0.00% FabArray::ParallelCopy() 41 6.512e-05 8.407e-05 9.63e-05 0.00% Castro::construct_old_source() 50 5.085e-05 7.644e-05 9.529e-05 0.00% FillPatchSingleLevel 41 6.771e-05 7.624e-05 8.85e-05 0.00% Amr::FinalizeInit() 1 3.674e-06 1.527e-05 8.445e-05 0.00% Castro::subcycle_advance_ctu() 10 3.585e-05 4.375e-05 7.179e-05 0.00% Amr::writeSmallPlotFile() 1 2.862e-05 5.11e-05 7.113e-05 0.00% FabArrayBase::getCPC() 41 4.82e-05 5.39e-05 6.245e-05 0.00% Castro::advance() 10 4.016e-05 4.767e-05 5.574e-05 0.00% Amr::defBaseLevel() 1 3.615e-05 4.281e-05 5.015e-05 0.00% Castro::apply_source_to_state() 20 4.256e-05 4.554e-05 4.979e-05 0.00% Castro::construct_old_gravity() 10 3.014e-05 3.654e-05 4.349e-05 0.00% Castro::construct_new_gravity() 10 2.765e-05 3.4e-05 3.867e-05 0.00% FabArrayBase::CPC::define() 2 2.769e-05 2.967e-05 3.386e-05 0.00% Amr::initSubcycle() 1 1.017e-05 1.387e-05 3.347e-05 0.00% Castro::expand_state() 10 1.721e-05 2.343e-05 3.134e-05 0.00% Gravity::swapTimeLevels() 10 8.2e-06 1.431e-05 2.701e-05 0.00% Castro::enforce_speed_limit() 62 2.189e-05 2.476e-05 2.692e-05 0.00% Castro::check_for_nan() 20 1.953e-05 2.293e-05 2.66e-05 0.00% Castro::computeNewDt() 9 7.893e-06 1.17e-05 2.5e-05 0.00% Gravity::set_mass_offset() 10 1.109e-05 1.375e-05 2.399e-05 0.00% Castro::post_timestep() 10 1.167e-05 1.45e-05 1.781e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.955e-06 1.128e-05 1.307e-05 0.00% Castro::post_init() 1 8.909e-06 9.756e-06 1.147e-05 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.838e-06 9.697e-06 0.00% Castro::create_source_corrector() 10 7.096e-06 8.231e-06 9.52e-06 0.00% Castro::FluxRegCrseInit 10 6.635e-06 7.743e-06 9.197e-06 0.00% Amr::init() 1 1.732e-06 3.05e-06 9.167e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.974e-06 5.196e-06 6.948e-06 0.00% Amr::InitializeInit() 1 2.881e-06 3.764e-06 5.806e-06 0.00% Castro::post_regrid() 1 2.477e-06 3.078e-06 4.431e-06 0.00% Castro::computeInitialDt() 2 3.181e-06 3.64e-06 4.148e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.413e-06 2.89e-06 0.00% Castro::FluxRegFineAdd() 10 1.991e-06 2.306e-06 2.811e-06 0.00% Amr::initialInit() 1 1.603e-06 1.889e-06 2.339e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.54 3.541 100.00% Amr::coarseTimeStep() 10 3.331 3.331 3.331 94.08% Amr::timeStep() 10 3.317 3.318 3.319 93.73% Castro::advance() 10 3.301 3.302 3.303 93.28% Castro::subcycle_advance_ctu() 10 3.221 3.23 3.237 91.42% Castro::do_advance_ctu() 10 3.221 3.23 3.237 91.41% Castro::construct_ctu_hydro_source() 10 2.472 2.474 2.478 69.99% Gravity::make_radial_gravity() 21 0.3073 0.3151 0.3253 9.19% AmrLevel::FillPatch() 41 0.1993 0.2141 0.2292 6.47% Gravity::get_new_grav_vector() 11 0.2097 0.2139 0.2201 6.22% FillPatchIterator::Initialize 41 0.1686 0.1821 0.2036 5.75% Castro::construct_old_gravity() 10 0.1849 0.1921 0.2009 5.67% Gravity::get_old_grav_vector() 10 0.1839 0.1913 0.1998 5.64% Castro::construct_new_gravity() 10 0.1874 0.1913 0.1978 5.59% Amr::init() 1 0.197 0.1972 0.1972 5.57% Amr::initialInit() 1 0.1819 0.1823 0.1825 5.15% Castro::initialize_do_advance() 10 0.1631 0.1717 0.1811 5.11% FillPatchIterator::FillFromLevel0() 41 0.1288 0.1406 0.1669 4.71% FillPatchSingleLevel 41 0.1287 0.1404 0.1668 4.71% Amr::InitializeInit() 1 0.06798 0.1138 0.1562 4.41% Amr::defBaseLevel() 1 0.06798 0.1138 0.1562 4.41% Castro::initData() 1 0.0527 0.09648 0.1386 3.91% Castro::estTimeStep() 21 0.03989 0.08108 0.1381 3.90% FabArray::ParallelCopy() 41 0.09516 0.1083 0.1359 3.84% Castro::expand_state() 10 0.1085 0.1191 0.1261 3.56% Castro::clean_state() 62 0.1104 0.1156 0.1194 3.37% check_for_negative_density() 10 0.02601 0.08293 0.1165 3.29% Amr::FinalizeInit() 1 0.02613 0.06851 0.1143 3.23% FabArray::ParallelCopy_finish() 41 0.05481 0.06934 0.1021 2.88% Castro::do_old_sources() 10 0.08879 0.09237 0.09505 2.68% Castro::computeInitialDt() 2 0.002319 0.04462 0.09028 2.55% amrex::Copy() 193 0.06073 0.07667 0.08475 2.39% Castro::do_new_sources() 10 0.05731 0.06476 0.08014 2.26% FabArray::setVal() 143 0.05963 0.06722 0.07972 2.25% Castro::initialize_advance() 10 0.06126 0.06855 0.07755 2.19% Castro::computeTemp() 63 0.0626 0.06772 0.07029 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04534 0.04825 0.05008 1.41% Castro::reset_internal_energy(Fab) 1008 0.04507 0.04796 0.0498 1.41% Castro::normalize_species() 62 0.04182 0.04279 0.04348 1.23% FabArray::ParallelCopy_nowait() 41 0.03367 0.03885 0.04028 1.14% Castro::finalize_do_advance() 10 0.01298 0.02802 0.03936 1.11% Castro::construct_new_source() 50 0.02762 0.03003 0.03618 1.02% StateDataPhysBCFunct::() 41 0.03083 0.03209 0.03395 0.96% StateData::FillBoundary(geom) 41 0.03069 0.03196 0.03382 0.96% Gravity::interpolate_monopole_grav() 21 0.02809 0.02972 0.03303 0.93% Castro::construct_new_gravity_source() 10 0.02163 0.02408 0.02994 0.85% Castro::post_init() 1 0.0232 0.02348 0.02367 0.67% Amr::writePlotFile() 2 0.02241 0.02252 0.02295 0.65% Castro::post_timestep() 10 0.01526 0.01593 0.01662 0.47% Castro::check_for_nan() 20 0.009374 0.01047 0.01329 0.38% MultiFab::contains_nan() 20 0.009351 0.01045 0.01327 0.37% Castro::apply_source_to_state() 20 0.01153 0.01216 0.01295 0.37% FabArray::Saxpy() 20 0.01148 0.01211 0.0129 0.36% Castro::Castro() 1 0.009648 0.01111 0.01217 0.34% VisMF::Write(FabArray) 2 0.008472 0.009353 0.01207 0.34% FabArray::setDomainBndry() 41 0.007565 0.009676 0.01171 0.33% Castro::construct_old_source() 50 0.006575 0.008725 0.009512 0.27% Castro::computeNewDt() 9 0.009335 0.009393 0.009432 0.27% Castro::construct_old_gravity_source() 10 0.006524 0.008648 0.009424 0.27% Castro::initMFs() 1 0.006456 0.007245 0.007984 0.23% AmrLevel::AmrLevel(dm) 1 0.00532 0.005962 0.006616 0.19% StateData::define() 4 0.005307 0.005951 0.006605 0.19% Castro::enforce_min_density() 62 0.005583 0.005912 0.006442 0.18% Castro::finalize_advance() 10 0.00291 0.003523 0.00424 0.12% Castro::swap_state_time_levels() 10 0.002676 0.003771 0.004198 0.12% Castro::buildMetrics() 1 0.001592 0.001849 0.002075 0.06% Castro::post_regrid() 1 0.001424 0.00155 0.001631 0.05% Amr::InitAmr() 1 0.0003744 0.0004421 0.0006529 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.766e-05 0.000237 0.000313 0.01% DistributionMapping::LeastUsedCPUs() 1 3.273e-05 0.0002304 0.0003048 0.01% Castro::enforce_consistent_e() 1 7.828e-05 9.037e-05 0.0001066 0.00% FabArrayBase::getCPC() 41 7.604e-05 8.356e-05 9.422e-05 0.00% Amr::writeSmallPlotFile() 1 2.862e-05 5.11e-05 7.113e-05 0.00% FabArrayBase::CPC::define() 2 2.769e-05 2.967e-05 3.386e-05 0.00% Amr::initSubcycle() 1 1.017e-05 1.387e-05 3.347e-05 0.00% Gravity::swapTimeLevels() 10 8.2e-06 1.431e-05 2.701e-05 0.00% Castro::enforce_speed_limit() 62 2.189e-05 2.476e-05 2.692e-05 0.00% Gravity::set_mass_offset() 10 1.109e-05 1.375e-05 2.399e-05 0.00% Castro::retry_advance_ctu() 10 6.611e-06 7.838e-06 9.697e-06 0.00% Castro::create_source_corrector() 10 7.096e-06 8.231e-06 9.52e-06 0.00% Castro::FluxRegCrseInit 10 6.635e-06 7.743e-06 9.197e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.413e-06 2.89e-06 0.00% Castro::FluxRegFineAdd() 10 1.991e-06 2.306e-06 2.811e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 53 B 149 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-34-g9e8f8d60eca3) finalized