Initializing AMReX (v2024-35-gb892132f6144)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-35-gb892132f6144) initialized Starting run at 05:28:49 UTC on 2024-03-27. Successfully read inputs file ... Castro git describe: 24.03-31-g760ecc416 AMReX git describe: v2024-35-gb892132f6 Microphysics git describe: 24.03-22-gf47a7fcc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014197384 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.387433686 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362083373 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330869785 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.366013763 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338033265 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.313320121 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314095913 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314146946 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31303866 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313860582 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007698526 seconds Ending run at 05:28:52 UTC on 2024-03-27. Run time = 3.564707046 Run time without initialization = 3.365480241 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.564 ... 3.564 ... 3.565 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3389 2.3931 2.4607 69.03% Gravity::make_radial_gravity() 21 0.2927 0.3009 0.3137 8.80% check_for_negative_density() 10 0.04533 0.1123 0.1701 4.77% Castro::initData() 1 0.04933 0.09507 0.1363 3.82% Castro::estTimeStep() 21 0.0279 0.0722 0.1274 3.57% amrex::Copy() 193 0.06099 0.07562 0.08287 2.32% FabArray::ParallelCopy_finish() 41 0.03547 0.04982 0.074 2.08% FabArray::setVal() 143 0.05896 0.06551 0.07376 2.07% Castro::reset_internal_energy(Fab) 1008 0.04581 0.04802 0.04971 1.39% Castro::normalize_species() 62 0.04102 0.04213 0.04331 1.22% FabArray::ParallelCopy_nowait() 41 0.03321 0.03879 0.04016 1.13% FillPatchIterator::Initialize 41 0.02809 0.03156 0.03325 0.93% StateData::FillBoundary(geom) 41 0.02838 0.03037 0.03249 0.91% Gravity::interpolate_monopole_grav() 21 0.02816 0.0297 0.03086 0.87% Castro::construct_new_gravity_source() 10 0.02121 0.02312 0.02545 0.71% Castro::computeTemp() 63 0.01907 0.01965 0.0201 0.56% Castro::initialize_do_advance() 10 0.01331 0.01656 0.01922 0.54% FabArray::Saxpy() 20 0.01055 0.01179 0.0125 0.35% Castro::initialize_advance() 10 0.005472 0.009892 0.01245 0.35% Amr::writePlotFile() 2 0.007763 0.01043 0.01226 0.34% FabArray::setDomainBndry() 41 0.007269 0.009949 0.01213 0.34% MultiFab::contains_nan() 20 0.01046 0.01117 0.01191 0.33% VisMF::Write(FabArray) 2 0.008706 0.009328 0.01172 0.33% Castro::construct_old_gravity_source() 10 0.006538 0.008881 0.009886 0.28% Castro::initMFs() 1 0.006399 0.007203 0.007825 0.22% Castro::enforce_min_density() 62 0.007094 0.007329 0.007516 0.21% StateData::define() 4 0.005346 0.00592 0.006311 0.18% Castro::construct_new_source() 50 0.005401 0.005929 0.006231 0.17% Gravity::get_new_grav_vector() 11 0.003345 0.003914 0.005378 0.15% Castro::swap_state_time_levels() 10 0.00283 0.003814 0.004201 0.12% main() 1 0.00302 0.003557 0.004082 0.11% Amr::coarseTimeStep() 10 0.001875 0.002388 0.00281 0.08% Gravity::get_old_grav_vector() 10 0.001434 0.002034 0.002683 0.08% Castro::buildMetrics() 1 0.001532 0.001684 0.001771 0.05% AmrLevel::FillPatch() 41 0.0008342 0.0009391 0.001179 0.03% Castro::finalize_do_advance() 10 0.0004588 0.0008536 0.001137 0.03% Amr::InitAmr() 1 0.0003616 0.0004108 0.0005085 0.01% Amr::timeStep() 10 0.0001583 0.0002153 0.0004529 0.01% Amr::writeSmallPlotFile() 1 3.305e-05 9.43e-05 0.0004207 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002828 0.0002975 0.0003113 0.01% Castro::clean_state() 62 0.0001453 0.0001616 0.0002075 0.01% Castro::do_advance_ctu() 10 0.0001414 0.0001613 0.000196 0.01% DistributionMapping::LeastUsedCPUs() 1 3.125e-05 0.0001219 0.000156 0.00% StateDataPhysBCFunct::() 41 8.689e-05 0.0001084 0.000144 0.00% Castro::enforce_consistent_e() 1 7.578e-05 9.14e-05 0.0001315 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001207 0.000126 0.0001308 0.00% Castro::finalize_advance() 10 9.032e-05 0.000106 0.0001148 0.00% Castro::do_old_sources() 10 8.819e-05 9.858e-05 0.0001112 0.00% Castro::Castro() 1 8.46e-05 9.398e-05 0.0001081 0.00% FabArray::ParallelCopy() 41 7.406e-05 8.385e-05 0.0001059 0.00% Castro::construct_old_source() 50 5.987e-05 7.657e-05 9.878e-05 0.00% FillPatchSingleLevel 41 7.246e-05 7.729e-05 8.77e-05 0.00% FabArrayBase::getCPC() 41 5.476e-05 6.312e-05 7.602e-05 0.00% Amr::FinalizeInit() 1 3.438e-06 1.32e-05 7.54e-05 0.00% Castro::do_new_sources() 10 5.574e-05 6.274e-05 6.816e-05 0.00% Castro::subcycle_advance_ctu() 10 3.859e-05 4.521e-05 6.374e-05 0.00% Castro::advance() 10 3.889e-05 4.638e-05 5.668e-05 0.00% Castro::apply_source_to_state() 20 4.332e-05 4.815e-05 5.666e-05 0.00% Amr::defBaseLevel() 1 3.693e-05 4.359e-05 5.301e-05 0.00% Castro::construct_old_gravity() 10 2.916e-05 3.849e-05 4.443e-05 0.00% Castro::construct_new_gravity() 10 2.999e-05 3.468e-05 4.286e-05 0.00% FabArrayBase::CPC::define() 2 2.698e-05 3.049e-05 3.779e-05 0.00% Castro::enforce_speed_limit() 62 2.273e-05 2.631e-05 3.193e-05 0.00% Castro::expand_state() 10 2.123e-05 2.365e-05 2.998e-05 0.00% Castro::check_for_nan() 20 2.031e-05 2.242e-05 2.402e-05 0.00% Gravity::set_mass_offset() 10 1.291e-05 1.694e-05 2.084e-05 0.00% Castro::post_timestep() 10 1.244e-05 1.401e-05 1.582e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.318e-06 1.086e-05 1.418e-05 0.00% Gravity::swapTimeLevels() 10 7.957e-06 1.018e-05 1.29e-05 0.00% Castro::computeNewDt() 9 7.398e-06 9.909e-06 1.186e-05 0.00% Amr::initSubcycle() 1 1.021e-05 1.123e-05 1.174e-05 0.00% Castro::retry_advance_ctu() 10 6.516e-06 8.045e-06 9.849e-06 0.00% Castro::FluxRegCrseInit 10 7.321e-06 8.129e-06 9.44e-06 0.00% Castro::create_source_corrector() 10 6.136e-06 7.444e-06 8.433e-06 0.00% Amr::InitializeInit() 1 2.749e-06 3.393e-06 5.974e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.966e-06 4.848e-06 5.97e-06 0.00% Castro::post_init() 1 2.604e-06 3.192e-06 5.076e-06 0.00% Castro::post_regrid() 1 1.938e-06 3.018e-06 4.684e-06 0.00% Castro::computeInitialDt() 2 3.001e-06 3.555e-06 4.303e-06 0.00% Amr::init() 1 1.756e-06 2.435e-06 4.112e-06 0.00% Castro::FluxRegFineAdd() 10 2.032e-06 2.369e-06 3.234e-06 0.00% Amr::initialInit() 1 1.416e-06 1.717e-06 2.217e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.123e-06 1.204e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.564 3.564 3.565 100.00% Amr::coarseTimeStep() 10 3.354 3.354 3.354 94.08% Amr::timeStep() 10 3.341 3.341 3.341 93.74% Castro::advance() 10 3.324 3.325 3.325 93.28% Castro::subcycle_advance_ctu() 10 3.248 3.254 3.259 91.43% Castro::do_advance_ctu() 10 3.248 3.254 3.259 91.43% Castro::construct_ctu_hydro_source() 10 2.524 2.528 2.534 71.09% Gravity::make_radial_gravity() 21 0.3085 0.317 0.327 9.17% Gravity::get_new_grav_vector() 11 0.2103 0.2137 0.2156 6.05% AmrLevel::FillPatch() 41 0.18 0.1922 0.2 5.61% Amr::init() 1 0.1986 0.1987 0.1987 5.57% Castro::construct_old_gravity() 10 0.1811 0.1857 0.1963 5.51% Gravity::get_old_grav_vector() 10 0.1803 0.1851 0.1959 5.49% Castro::construct_new_gravity() 10 0.1883 0.1914 0.193 5.41% Amr::initialInit() 1 0.1836 0.1841 0.1843 5.17% FillPatchIterator::Initialize 41 0.1498 0.161 0.1714 4.81% check_for_negative_density() 10 0.04533 0.1123 0.1701 4.77% Castro::initialize_do_advance() 10 0.1566 0.1623 0.1701 4.77% Amr::InitializeInit() 1 0.06835 0.1163 0.1581 4.43% Amr::defBaseLevel() 1 0.06835 0.1163 0.158 4.43% Castro::initData() 1 0.05308 0.09898 0.1404 3.94% FillPatchIterator::FillFromLevel0() 41 0.1084 0.1195 0.1361 3.82% FillPatchSingleLevel 41 0.1083 0.1193 0.1359 3.81% Castro::estTimeStep() 21 0.0279 0.0722 0.1274 3.57% Castro::clean_state() 62 0.1138 0.1167 0.1196 3.36% Castro::expand_state() 10 0.1027 0.1093 0.1179 3.31% Amr::FinalizeInit() 1 0.02555 0.06784 0.1158 3.25% FabArray::ParallelCopy() 41 0.07561 0.08878 0.1074 3.01% Castro::do_old_sources() 10 0.08631 0.08934 0.0919 2.58% Castro::computeInitialDt() 2 0.002198 0.04405 0.09187 2.58% amrex::Copy() 193 0.06099 0.07562 0.08287 2.32% FabArray::ParallelCopy_finish() 41 0.03547 0.04982 0.074 2.08% FabArray::setVal() 143 0.05896 0.06551 0.07376 2.07% Castro::initialize_advance() 10 0.0617 0.06719 0.07293 2.05% Castro::do_new_sources() 10 0.05682 0.0631 0.07022 1.97% Castro::computeTemp() 63 0.06525 0.06797 0.07008 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04611 0.04832 0.05001 1.40% Castro::reset_internal_energy(Fab) 1008 0.04581 0.04802 0.04971 1.39% Castro::normalize_species() 62 0.04102 0.04213 0.04331 1.22% FabArray::ParallelCopy_nowait() 41 0.03332 0.03888 0.04024 1.13% StateDataPhysBCFunct::() 41 0.02847 0.03048 0.0326 0.91% StateData::FillBoundary(geom) 41 0.02838 0.03037 0.03249 0.91% Castro::construct_new_source() 50 0.02691 0.02904 0.03156 0.89% Gravity::interpolate_monopole_grav() 21 0.02816 0.0297 0.03086 0.87% Castro::finalize_do_advance() 10 0.01218 0.01976 0.02712 0.76% Castro::construct_new_gravity_source() 10 0.02121 0.02312 0.02545 0.71% Castro::post_init() 1 0.02307 0.02338 0.02353 0.66% Amr::writePlotFile() 2 0.02219 0.02237 0.0228 0.64% Castro::post_timestep() 10 0.01581 0.01603 0.01618 0.45% Castro::apply_source_to_state() 20 0.01059 0.01184 0.01254 0.35% FabArray::Saxpy() 20 0.01055 0.01179 0.0125 0.35% FabArray::setDomainBndry() 41 0.007269 0.009949 0.01213 0.34% Castro::Castro() 1 0.009446 0.01117 0.01209 0.34% Castro::check_for_nan() 20 0.01048 0.01119 0.01193 0.33% MultiFab::contains_nan() 20 0.01046 0.01117 0.01191 0.33% VisMF::Write(FabArray) 2 0.008706 0.009328 0.01172 0.33% Castro::construct_old_source() 50 0.006598 0.008957 0.009985 0.28% Castro::construct_old_gravity_source() 10 0.006538 0.008881 0.009886 0.28% Castro::computeNewDt() 9 0.009231 0.009253 0.009272 0.26% Castro::initMFs() 1 0.006399 0.007203 0.007825 0.22% Castro::enforce_min_density() 62 0.007094 0.007329 0.007516 0.21% AmrLevel::AmrLevel(dm) 1 0.005356 0.005931 0.006325 0.18% StateData::define() 4 0.005346 0.00592 0.006311 0.18% Castro::swap_state_time_levels() 10 0.00283 0.003814 0.004201 0.12% Castro::finalize_advance() 10 0.00293 0.003334 0.004052 0.11% Castro::buildMetrics() 1 0.001652 0.001818 0.001901 0.05% Castro::post_regrid() 1 0.001426 0.001527 0.001636 0.05% Amr::InitAmr() 1 0.000372 0.0004221 0.0005187 0.01% Amr::writeSmallPlotFile() 1 3.305e-05 9.43e-05 0.0004207 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 3.619e-05 0.0001278 0.0001631 0.00% DistributionMapping::LeastUsedCPUs() 1 3.125e-05 0.0001219 0.000156 0.00% Castro::enforce_consistent_e() 1 7.578e-05 9.14e-05 0.0001315 0.00% FabArrayBase::getCPC() 41 8.213e-05 9.361e-05 0.0001065 0.00% FabArrayBase::CPC::define() 2 2.698e-05 3.049e-05 3.779e-05 0.00% Castro::enforce_speed_limit() 62 2.273e-05 2.631e-05 3.193e-05 0.00% Gravity::set_mass_offset() 10 1.291e-05 1.694e-05 2.084e-05 0.00% Gravity::swapTimeLevels() 10 7.957e-06 1.018e-05 1.29e-05 0.00% Amr::initSubcycle() 1 1.021e-05 1.123e-05 1.174e-05 0.00% Castro::retry_advance_ctu() 10 6.516e-06 8.045e-06 9.849e-06 0.00% Castro::FluxRegCrseInit 10 7.321e-06 8.129e-06 9.44e-06 0.00% Castro::create_source_corrector() 10 6.136e-06 7.444e-06 8.433e-06 0.00% Castro::FluxRegFineAdd() 10 2.032e-06 2.369e-06 3.234e-06 0.00% DistributionMapping::Distribute() 1 9.67e-07 1.123e-06 1.204e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 38 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-35-gb892132f6144) finalized