Initializing AMReX (v2024-42-g7437aa17d36f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-42-g7437aa17d36f) initialized Starting run at 05:56:18 UTC on 2024-03-28. Successfully read inputs file ... Castro git describe: 24.03-37-g6b90dd1c0 AMReX git describe: v2024-42-g7437aa17d Microphysics git describe: 24.03-23-g3112c13a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01536678 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361667209 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.32984771 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32776079 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327828985 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.396705332 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.319681006 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318969887 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316573974 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31812052 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317380446 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00890261 seconds Ending run at 05:56:22 UTC on 2024-03-28. Run time = 3.55884466 Run time without initialization = 3.349166645 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.558 ... 3.558 ... 3.559 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2944 2.3293 2.4206 68.02% Gravity::make_radial_gravity() 21 0.2975 0.31 0.3258 9.16% check_for_negative_density() 10 0.0225 0.1182 0.1562 4.39% Castro::initData() 1 0.04905 0.09759 0.142 3.99% FabArray::ParallelCopy_finish() 41 0.05601 0.07803 0.139 3.91% Castro::estTimeStep() 21 0.03069 0.07492 0.1269 3.57% amrex::Copy() 193 0.05618 0.07711 0.08695 2.44% FabArray::setVal() 143 0.04596 0.06775 0.08133 2.29% Castro::reset_internal_energy(Fab) 1008 0.04937 0.05129 0.05298 1.49% FabArray::ParallelCopy_nowait() 41 0.0306 0.04013 0.0472 1.33% Castro::normalize_species() 62 0.04139 0.04288 0.04712 1.32% FillPatchIterator::Initialize 41 0.02551 0.03297 0.0367 1.03% StateData::FillBoundary(geom) 41 0.0265 0.02873 0.0321 0.90% Gravity::interpolate_monopole_grav() 21 0.0279 0.02912 0.0297 0.83% Castro::construct_new_gravity_source() 10 0.02099 0.02258 0.02405 0.68% Castro::computeTemp() 63 0.01713 0.01865 0.01986 0.56% Castro::initialize_do_advance() 10 0.01031 0.01648 0.01854 0.52% Amr::writePlotFile() 2 0.008355 0.01252 0.01557 0.44% VisMF::Write(FabArray) 2 0.008289 0.009604 0.0131 0.37% FabArray::Saxpy() 20 0.009365 0.0118 0.01294 0.36% FabArray::setDomainBndry() 41 0.006577 0.009904 0.01282 0.36% Castro::initialize_advance() 10 0.00476 0.01001 0.01249 0.35% MultiFab::contains_nan() 20 0.009814 0.01064 0.0122 0.34% Castro::construct_old_gravity_source() 10 0.005662 0.008445 0.009573 0.27% Castro::initMFs() 1 0.006745 0.007577 0.008566 0.24% Castro::construct_new_source() 50 0.006061 0.006719 0.006984 0.20% StateData::define() 4 0.005636 0.006209 0.006749 0.19% Castro::enforce_min_density() 62 0.005895 0.006366 0.006646 0.19% main() 1 0.00376 0.0042 0.004858 0.14% Castro::swap_state_time_levels() 10 0.002719 0.003862 0.004599 0.13% Gravity::get_new_grav_vector() 11 0.002619 0.003421 0.004161 0.12% Amr::coarseTimeStep() 10 0.001695 0.002533 0.003191 0.09% Gravity::get_old_grav_vector() 10 0.001439 0.001907 0.002363 0.07% Castro::buildMetrics() 1 0.001532 0.001785 0.002037 0.06% Castro::finalize_do_advance() 10 0.000404 0.00104 0.001632 0.05% AmrLevel::FillPatch() 41 0.0007019 0.0009465 0.001178 0.03% Amr::InitAmr() 1 0.0003911 0.0004209 0.0005794 0.02% Amr::timeStep() 10 0.0001741 0.0002491 0.0004809 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002803 0.0003032 0.0003343 0.01% DistributionMapping::LeastUsedCPUs() 1 3.457e-05 0.0001801 0.0002249 0.01% Castro::clean_state() 62 0.0001539 0.0001675 0.0001958 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001691 0.0001849 0.01% StateDataPhysBCFunct::() 41 0.0001134 0.0001252 0.0001687 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001115 0.0001357 0.0001629 0.00% Castro::Castro() 1 8.609e-05 0.0001141 0.000144 0.00% Castro::finalize_advance() 10 0.0001074 0.0001177 0.0001302 0.00% FabArray::ParallelCopy() 41 7.431e-05 8.855e-05 0.0001259 0.00% Castro::do_old_sources() 10 9.243e-05 0.0001036 0.0001085 0.00% Castro::enforce_consistent_e() 1 8.109e-05 9.082e-05 0.0001046 0.00% FillPatchSingleLevel 41 7.091e-05 7.699e-05 8.973e-05 0.00% Castro::construct_old_source() 50 6.328e-05 7.403e-05 8.83e-05 0.00% Castro::subcycle_advance_ctu() 10 3.66e-05 5.155e-05 8.495e-05 0.00% Castro::do_new_sources() 10 5.915e-05 6.861e-05 7.932e-05 0.00% Amr::FinalizeInit() 1 3.992e-06 1.475e-05 7.574e-05 0.00% FabArrayBase::getCPC() 41 5.331e-05 6.385e-05 7.369e-05 0.00% Castro::advance() 10 4.617e-05 5.458e-05 7.357e-05 0.00% Amr::defBaseLevel() 1 5.432e-05 6.633e-05 7.22e-05 0.00% Amr::writeSmallPlotFile() 1 3.249e-05 4.831e-05 6.203e-05 0.00% Castro::apply_source_to_state() 20 4.401e-05 5.108e-05 6.004e-05 0.00% Castro::construct_new_gravity() 10 3.355e-05 4.15e-05 4.709e-05 0.00% Castro::construct_old_gravity() 10 3.552e-05 4.188e-05 4.654e-05 0.00% FabArrayBase::CPC::define() 2 2.728e-05 3.19e-05 3.655e-05 0.00% Castro::expand_state() 10 2.142e-05 2.485e-05 3.123e-05 0.00% Castro::enforce_speed_limit() 62 2.395e-05 2.71e-05 3.102e-05 0.00% Castro::check_for_nan() 20 2.268e-05 2.586e-05 2.869e-05 0.00% Castro::post_timestep() 10 1.543e-05 1.743e-05 2.34e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.445e-05 1.716e-05 2.088e-05 0.00% Gravity::set_mass_offset() 10 1.322e-05 1.669e-05 2.022e-05 0.00% Castro::create_source_corrector() 10 6.042e-06 9.434e-06 1.843e-05 0.00% Gravity::swapTimeLevels() 10 7.037e-06 1.16e-05 1.656e-05 0.00% Amr::initSubcycle() 1 9.915e-06 1.125e-05 1.242e-05 0.00% Castro::computeNewDt() 9 7.7e-06 9.02e-06 1.037e-05 0.00% Castro::FluxRegCrseInit 10 7.011e-06 8.388e-06 9.161e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.821e-06 5.613e-06 8.608e-06 0.00% Castro::retry_advance_ctu() 10 6.662e-06 7.612e-06 8.442e-06 0.00% Amr::InitializeInit() 1 2.84e-06 3.745e-06 6.021e-06 0.00% Castro::computeInitialDt() 2 2.675e-06 3.472e-06 4.829e-06 0.00% Castro::post_init() 1 2.5e-06 3.309e-06 4.446e-06 0.00% Castro::post_regrid() 1 2.141e-06 3.008e-06 4.326e-06 0.00% Castro::FluxRegFineAdd() 10 2.053e-06 2.269e-06 3.025e-06 0.00% Amr::init() 1 2.044e-06 2.338e-06 2.681e-06 0.00% Amr::initialInit() 1 1.325e-06 1.724e-06 1.984e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.292e-06 1.708e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.558 3.558 3.559 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.72% Amr::timeStep() 10 3.322 3.322 3.323 93.37% Castro::advance() 10 3.305 3.306 3.306 92.90% Castro::subcycle_advance_ctu() 10 3.222 3.231 3.254 91.43% Castro::do_advance_ctu() 10 3.222 3.231 3.254 91.43% Castro::construct_ctu_hydro_source() 10 2.465 2.468 2.472 69.45% Gravity::make_radial_gravity() 21 0.3149 0.3253 0.337 9.47% AmrLevel::FillPatch() 41 0.2019 0.2211 0.2512 7.06% FillPatchIterator::Initialize 41 0.1748 0.1903 0.23 6.46% Gravity::get_new_grav_vector() 11 0.2122 0.2141 0.2158 6.06% Amr::init() 1 0.2089 0.2091 0.2091 5.88% Castro::construct_old_gravity() 10 0.1881 0.1949 0.2046 5.75% Gravity::get_old_grav_vector() 10 0.1874 0.1942 0.204 5.73% FillPatchIterator::FillFromLevel0() 41 0.1311 0.1474 0.1973 5.54% FillPatchSingleLevel 41 0.131 0.1473 0.1972 5.54% Amr::initialInit() 1 0.1925 0.1932 0.1938 5.44% Castro::initialize_do_advance() 10 0.1693 0.1807 0.1938 5.44% Castro::construct_new_gravity() 10 0.1879 0.1893 0.1909 5.36% FabArray::ParallelCopy() 41 0.0987 0.1183 0.1698 4.77% Amr::InitializeInit() 1 0.06806 0.1199 0.1644 4.62% Amr::defBaseLevel() 1 0.06806 0.1199 0.1644 4.62% check_for_negative_density() 10 0.0225 0.1182 0.1562 4.39% Castro::expand_state() 10 0.1127 0.127 0.1476 4.15% Castro::initData() 1 0.05275 0.1018 0.1465 4.12% FabArray::ParallelCopy_finish() 41 0.05601 0.07803 0.139 3.91% Castro::estTimeStep() 21 0.03069 0.07492 0.1269 3.57% Amr::FinalizeInit() 1 0.02936 0.07331 0.1253 3.52% Castro::clean_state() 62 0.1139 0.1186 0.123 3.46% Castro::do_old_sources() 10 0.09039 0.1004 0.1031 2.90% Castro::computeInitialDt() 2 0.002618 0.04709 0.09878 2.78% amrex::Copy() 193 0.05618 0.07711 0.08695 2.44% FabArray::setVal() 143 0.04596 0.06775 0.08133 2.29% Castro::initialize_advance() 10 0.04795 0.07095 0.08084 2.27% Castro::computeTemp() 63 0.06679 0.07024 0.07314 2.06% Castro::do_new_sources() 10 0.05659 0.06191 0.06726 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04966 0.05159 0.05328 1.50% Castro::reset_internal_energy(Fab) 1008 0.04937 0.05129 0.05298 1.49% FabArray::ParallelCopy_nowait() 41 0.03069 0.04023 0.04731 1.33% Castro::normalize_species() 62 0.04139 0.04288 0.04712 1.32% StateDataPhysBCFunct::() 41 0.02663 0.02885 0.03222 0.91% StateData::FillBoundary(geom) 41 0.0265 0.02873 0.0321 0.90% Castro::construct_new_source() 50 0.02705 0.0293 0.03103 0.87% Gravity::interpolate_monopole_grav() 21 0.0279 0.02912 0.0297 0.83% Castro::post_init() 1 0.02526 0.02585 0.0263 0.74% Amr::writePlotFile() 2 0.02435 0.02487 0.02553 0.72% Castro::finalize_do_advance() 10 0.0127 0.01942 0.02438 0.69% Castro::construct_new_gravity_source() 10 0.02099 0.02258 0.02405 0.68% Castro::post_timestep() 10 0.01574 0.01623 0.01675 0.47% VisMF::Write(FabArray) 2 0.008289 0.009604 0.0131 0.37% Castro::apply_source_to_state() 20 0.009409 0.01186 0.01298 0.36% FabArray::Saxpy() 20 0.009365 0.0118 0.01294 0.36% FabArray::setDomainBndry() 41 0.006577 0.009904 0.01282 0.36% Castro::Castro() 1 0.009548 0.01166 0.01264 0.36% Castro::check_for_nan() 20 0.009842 0.01067 0.01223 0.34% MultiFab::contains_nan() 20 0.009814 0.01064 0.0122 0.34% Castro::construct_old_source() 50 0.005725 0.008519 0.009661 0.27% Castro::construct_old_gravity_source() 10 0.005662 0.008445 0.009573 0.27% Castro::computeNewDt() 9 0.009434 0.00946 0.009484 0.27% Castro::initMFs() 1 0.006745 0.007577 0.008566 0.24% AmrLevel::AmrLevel(dm) 1 0.005654 0.006226 0.006769 0.19% StateData::define() 4 0.005636 0.006209 0.006749 0.19% Castro::enforce_min_density() 62 0.005895 0.006366 0.006646 0.19% Castro::swap_state_time_levels() 10 0.002719 0.003862 0.004599 0.13% Castro::finalize_advance() 10 0.002945 0.003249 0.003633 0.10% Castro::buildMetrics() 1 0.001653 0.00193 0.002195 0.06% Castro::post_regrid() 1 0.00156 0.001626 0.001866 0.05% Amr::InitAmr() 1 0.0004023 0.0004322 0.0005893 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.937e-05 0.000187 0.0002349 0.01% DistributionMapping::LeastUsedCPUs() 1 3.457e-05 0.0001801 0.0002249 0.01% FabArrayBase::getCPC() 41 8.515e-05 9.575e-05 0.0001096 0.00% Castro::enforce_consistent_e() 1 8.109e-05 9.082e-05 0.0001046 0.00% Amr::writeSmallPlotFile() 1 3.249e-05 4.831e-05 6.203e-05 0.00% FabArrayBase::CPC::define() 2 2.728e-05 3.19e-05 3.655e-05 0.00% Castro::enforce_speed_limit() 62 2.395e-05 2.71e-05 3.102e-05 0.00% Gravity::set_mass_offset() 10 1.322e-05 1.669e-05 2.022e-05 0.00% Castro::create_source_corrector() 10 6.042e-06 9.434e-06 1.843e-05 0.00% Gravity::swapTimeLevels() 10 7.037e-06 1.16e-05 1.656e-05 0.00% Amr::initSubcycle() 1 9.915e-06 1.125e-05 1.242e-05 0.00% Castro::FluxRegCrseInit 10 7.011e-06 8.388e-06 9.161e-06 0.00% Castro::retry_advance_ctu() 10 6.662e-06 7.612e-06 8.442e-06 0.00% Castro::FluxRegFineAdd() 10 2.053e-06 2.269e-06 3.025e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.292e-06 1.708e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-42-g7437aa17d36f) finalized