Initializing AMReX (v2024-42-g7437aa17d36f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-42-g7437aa17d36f) initialized Starting run at 05:20:11 UTC on 2024-03-29. Successfully read inputs file ... Castro git describe: 24.03-37-g6b90dd1c0 AMReX git describe: v2024-42-g7437aa17d Microphysics git describe: 24.03-23-g3112c13a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014012046 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365517307 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342256298 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330448266 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32716078 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36303513 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.311297784 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30695483 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30791646 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.3067277 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307365252 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007645373 seconds Ending run at 05:20:15 UTC on 2024-03-29. Run time = 3.475080291 Run time without initialization = 3.281301942 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.474 ... 3.475 ... 3.475 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2731 2.3170 2.3640 68.02% Gravity::make_radial_gravity() 21 0.2887 0.2963 0.3116 8.97% Castro::initData() 1 0.05742 0.09279 0.1311 3.77% check_for_negative_density() 10 0.03381 0.08099 0.1271 3.66% FabArray::ParallelCopy_finish() 41 0.04667 0.06666 0.106 3.05% Castro::estTimeStep() 21 0.02844 0.06951 0.1058 3.05% amrex::Copy() 193 0.06635 0.07768 0.08594 2.47% FabArray::setVal() 143 0.05125 0.06629 0.07705 2.22% Castro::normalize_species() 62 0.04168 0.04622 0.05663 1.63% Castro::reset_internal_energy(Fab) 1008 0.05042 0.05279 0.05628 1.62% FabArray::ParallelCopy_nowait() 41 0.03408 0.03937 0.04213 1.21% FillPatchIterator::Initialize 41 0.02774 0.03194 0.03625 1.04% StateData::FillBoundary(geom) 41 0.02614 0.02828 0.03043 0.88% Gravity::interpolate_monopole_grav() 21 0.02777 0.02919 0.03023 0.87% Castro::construct_new_gravity_source() 10 0.02028 0.02253 0.02388 0.69% Castro::initialize_do_advance() 10 0.01162 0.01678 0.02149 0.62% Castro::computeTemp() 63 0.01827 0.01977 0.0208 0.60% Castro::initialize_advance() 10 0.005247 0.01069 0.01284 0.37% FabArray::Saxpy() 20 0.01051 0.01194 0.01279 0.37% FabArray::setDomainBndry() 41 0.006874 0.009747 0.01224 0.35% Amr::writePlotFile() 2 0.00759 0.01015 0.01207 0.35% VisMF::Write(FabArray) 2 0.008444 0.009036 0.01146 0.33% MultiFab::contains_nan() 20 0.009238 0.01 0.0111 0.32% Castro::construct_old_gravity_source() 10 0.006262 0.008533 0.009231 0.27% Castro::initMFs() 1 0.006261 0.007169 0.008623 0.25% StateData::define() 4 0.005181 0.00595 0.007449 0.21% Castro::construct_new_source() 50 0.006337 0.007015 0.007337 0.21% Amr::coarseTimeStep() 10 0.002156 0.004925 0.006653 0.19% Castro::enforce_min_density() 62 0.005959 0.006347 0.006568 0.19% main() 1 0.00308 0.003619 0.004194 0.12% Castro::swap_state_time_levels() 10 0.002847 0.003768 0.004109 0.12% Gravity::get_new_grav_vector() 11 0.002785 0.003207 0.003566 0.10% Gravity::get_old_grav_vector() 10 0.001524 0.00197 0.002343 0.07% Castro::buildMetrics() 1 0.001468 0.001672 0.002071 0.06% Castro::finalize_do_advance() 10 0.0003902 0.000927 0.001107 0.03% AmrLevel::FillPatch() 41 0.0007332 0.0008034 0.0009188 0.03% Amr::InitAmr() 1 0.0003669 0.0004197 0.0005701 0.02% Amr::timeStep() 10 0.0001604 0.0002326 0.0004713 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002827 0.0003156 0.0003621 0.01% DistributionMapping::LeastUsedCPUs() 1 2.409e-05 0.0001644 0.0002114 0.01% Castro::do_advance_ctu() 10 0.0001391 0.000158 0.0001954 0.01% Castro::clean_state() 62 0.000141 0.0001635 0.0001807 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001137 0.0001289 0.0001414 0.00% StateDataPhysBCFunct::() 41 0.0001126 0.0001235 0.0001395 0.00% Castro::finalize_advance() 10 0.000101 0.0001156 0.0001384 0.00% Castro::enforce_consistent_e() 1 9.131e-05 0.0001013 0.0001143 0.00% Castro::do_old_sources() 10 7.833e-05 9.646e-05 0.0001123 0.00% Castro::Castro() 1 7.811e-05 8.95e-05 9.812e-05 0.00% Amr::FinalizeInit() 1 3.73e-06 1.764e-05 9.595e-05 0.00% FabArray::ParallelCopy() 41 6.832e-05 8.154e-05 9.119e-05 0.00% Castro::subcycle_advance_ctu() 10 3.758e-05 5.652e-05 9.087e-05 0.00% Castro::construct_old_source() 50 5.36e-05 7.119e-05 8.27e-05 0.00% FillPatchSingleLevel 41 6.889e-05 7.525e-05 7.909e-05 0.00% Castro::do_new_sources() 10 5.898e-05 6.802e-05 7.905e-05 0.00% Amr::defBaseLevel() 1 4.725e-05 5.923e-05 7.45e-05 0.00% FabArrayBase::getCPC() 41 5.54e-05 6.291e-05 7.367e-05 0.00% Castro::advance() 10 4.347e-05 5.506e-05 6.971e-05 0.00% Amr::writeSmallPlotFile() 1 3.246e-05 4.618e-05 5.649e-05 0.00% Castro::apply_source_to_state() 20 3.991e-05 4.786e-05 5.487e-05 0.00% Castro::construct_old_gravity() 10 2.975e-05 4.077e-05 4.947e-05 0.00% Castro::construct_new_gravity() 10 3.372e-05 3.813e-05 4.156e-05 0.00% FabArrayBase::CPC::define() 2 2.625e-05 3.017e-05 3.347e-05 0.00% Castro::expand_state() 10 2.284e-05 2.633e-05 3.043e-05 0.00% Castro::enforce_speed_limit() 62 2.216e-05 2.552e-05 2.801e-05 0.00% Castro::check_for_nan() 20 2.271e-05 2.426e-05 2.627e-05 0.00% Castro::post_timestep() 10 1.238e-05 1.59e-05 2.36e-05 0.00% Gravity::set_mass_offset() 10 1.345e-05 1.671e-05 2.111e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.456e-05 1.741e-05 2.078e-05 0.00% Castro::retry_advance_ctu() 10 7.048e-06 8.734e-06 1.609e-05 0.00% Amr::initSubcycle() 1 9.705e-06 1.124e-05 1.439e-05 0.00% Castro::computeInitialDt() 2 2.906e-06 4.676e-06 1.396e-05 0.00% Castro::computeNewDt() 9 7.45e-06 9.234e-06 1.217e-05 0.00% Gravity::swapTimeLevels() 10 7.403e-06 9.67e-06 1.169e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.175e-06 6.046e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 6.556e-06 8.775e-06 1.028e-05 0.00% Castro::create_source_corrector() 10 6.104e-06 7.915e-06 9.294e-06 0.00% Castro::post_init() 1 2.558e-06 4.292e-06 9.174e-06 0.00% Amr::InitializeInit() 1 2.903e-06 3.599e-06 6.234e-06 0.00% Castro::post_regrid() 1 2.155e-06 3.053e-06 4.094e-06 0.00% Amr::init() 1 2.029e-06 2.351e-06 2.8e-06 0.00% DistributionMapping::Distribute() 1 1.08e-06 1.533e-06 2.576e-06 0.00% Castro::FluxRegFineAdd() 10 1.871e-06 2.097e-06 2.448e-06 0.00% Amr::initialInit() 1 1.484e-06 1.682e-06 1.928e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.474 3.475 3.475 100.00% Amr::coarseTimeStep() 10 3.27 3.27 3.27 94.08% Amr::timeStep() 10 3.252 3.254 3.257 93.71% Castro::advance() 10 3.236 3.236 3.237 93.14% Castro::subcycle_advance_ctu() 10 3.148 3.161 3.181 91.55% Castro::do_advance_ctu() 10 3.148 3.161 3.181 91.55% Castro::construct_ctu_hydro_source() 10 2.418 2.42 2.421 69.68% Gravity::make_radial_gravity() 21 0.303 0.3116 0.3251 9.36% AmrLevel::FillPatch() 41 0.187 0.2076 0.2256 6.49% Gravity::get_new_grav_vector() 11 0.2046 0.2067 0.2083 5.99% FillPatchIterator::Initialize 41 0.1565 0.1765 0.2013 5.79% Castro::construct_old_gravity() 10 0.1814 0.1867 0.1975 5.68% Gravity::get_old_grav_vector() 10 0.1807 0.186 0.197 5.67% Amr::init() 1 0.193 0.1932 0.1932 5.56% Castro::construct_new_gravity() 10 0.1821 0.1841 0.1853 5.33% Castro::initialize_do_advance() 10 0.1608 0.1731 0.1826 5.26% Amr::initialInit() 1 0.1787 0.179 0.1792 5.16% FillPatchIterator::FillFromLevel0() 41 0.1171 0.1348 0.1667 4.80% FillPatchSingleLevel 41 0.117 0.1347 0.1666 4.79% Amr::InitializeInit() 1 0.07933 0.1139 0.1525 4.39% Amr::defBaseLevel() 1 0.07933 0.1139 0.1525 4.39% FabArray::ParallelCopy() 41 0.08807 0.1062 0.1403 4.04% Castro::expand_state() 10 0.1049 0.1199 0.1358 3.91% Castro::clean_state() 62 0.1173 0.1246 0.1356 3.90% Castro::initData() 1 0.06191 0.09685 0.1351 3.89% check_for_negative_density() 10 0.03381 0.08099 0.1271 3.66% FabArray::ParallelCopy_finish() 41 0.04667 0.06666 0.106 3.05% Castro::estTimeStep() 21 0.02844 0.06951 0.1058 3.05% Castro::do_old_sources() 10 0.08938 0.09752 0.1008 2.90% Amr::FinalizeInit() 1 0.02659 0.06513 0.09974 2.87% amrex::Copy() 193 0.06635 0.07768 0.08594 2.47% Castro::initialize_advance() 10 0.05096 0.07169 0.08454 2.43% Castro::computeTemp() 63 0.069 0.07288 0.07726 2.22% FabArray::setVal() 143 0.05125 0.06629 0.07705 2.22% Castro::computeInitialDt() 2 0.002371 0.041 0.07559 2.18% Castro::do_new_sources() 10 0.05649 0.06329 0.06661 1.92% Castro::normalize_species() 62 0.04168 0.04622 0.05663 1.63% Castro::reset_internal_energy(MultiFab) 63 0.05073 0.05311 0.05663 1.63% Castro::reset_internal_energy(Fab) 1008 0.05042 0.05279 0.05628 1.62% FabArray::ParallelCopy_nowait() 41 0.03417 0.03946 0.04224 1.22% Castro::construct_new_source() 50 0.02662 0.02955 0.03117 0.90% StateDataPhysBCFunct::() 41 0.02626 0.02841 0.03054 0.88% StateData::FillBoundary(geom) 41 0.02614 0.02828 0.03043 0.88% Gravity::interpolate_monopole_grav() 21 0.02777 0.02919 0.03023 0.87% Castro::finalize_do_advance() 10 0.01629 0.01989 0.02686 0.77% Castro::construct_new_gravity_source() 10 0.02028 0.02253 0.02388 0.69% Castro::post_init() 1 0.02326 0.0236 0.02382 0.69% Amr::writePlotFile() 2 0.02178 0.02189 0.02228 0.64% Castro::post_timestep() 10 0.01598 0.01741 0.01975 0.57% Castro::apply_source_to_state() 20 0.01056 0.01199 0.01284 0.37% FabArray::Saxpy() 20 0.01051 0.01194 0.01279 0.37% FabArray::setDomainBndry() 41 0.006874 0.009747 0.01224 0.35% Castro::Castro() 1 0.00913 0.01084 0.01195 0.34% VisMF::Write(FabArray) 2 0.008444 0.009036 0.01146 0.33% Castro::check_for_nan() 20 0.009262 0.01003 0.01112 0.32% MultiFab::contains_nan() 20 0.009238 0.01 0.0111 0.32% Castro::computeNewDt() 9 0.009552 0.009571 0.009593 0.28% Castro::construct_old_source() 50 0.006315 0.008604 0.009302 0.27% Castro::construct_old_gravity_source() 10 0.006262 0.008533 0.009231 0.27% Castro::initMFs() 1 0.006261 0.007169 0.008623 0.25% AmrLevel::AmrLevel(dm) 1 0.005196 0.005967 0.00747 0.21% StateData::define() 4 0.005181 0.00595 0.007449 0.21% Castro::enforce_min_density() 62 0.005959 0.006347 0.006568 0.19% Castro::swap_state_time_levels() 10 0.002847 0.003768 0.004109 0.12% Castro::finalize_advance() 10 0.002975 0.003307 0.003663 0.11% Castro::buildMetrics() 1 0.001578 0.001813 0.002262 0.07% Castro::post_regrid() 1 0.001506 0.001735 0.002111 0.06% Amr::InitAmr() 1 0.0003774 0.0004309 0.0005813 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 2.935e-05 0.0001719 0.0002197 0.01% DistributionMapping::LeastUsedCPUs() 1 2.409e-05 0.0001644 0.0002114 0.01% Castro::enforce_consistent_e() 1 9.131e-05 0.0001013 0.0001143 0.00% FabArrayBase::getCPC() 41 8.367e-05 9.308e-05 0.0001058 0.00% Amr::writeSmallPlotFile() 1 3.246e-05 4.618e-05 5.649e-05 0.00% FabArrayBase::CPC::define() 2 2.625e-05 3.017e-05 3.347e-05 0.00% Castro::enforce_speed_limit() 62 2.216e-05 2.552e-05 2.801e-05 0.00% Gravity::set_mass_offset() 10 1.345e-05 1.671e-05 2.111e-05 0.00% Castro::retry_advance_ctu() 10 7.048e-06 8.734e-06 1.609e-05 0.00% Amr::initSubcycle() 1 9.705e-06 1.124e-05 1.439e-05 0.00% Gravity::swapTimeLevels() 10 7.403e-06 9.67e-06 1.169e-05 0.00% Castro::FluxRegCrseInit 10 6.556e-06 8.775e-06 1.028e-05 0.00% Castro::create_source_corrector() 10 6.104e-06 7.915e-06 9.294e-06 0.00% DistributionMapping::Distribute() 1 1.08e-06 1.533e-06 2.576e-06 0.00% Castro::FluxRegFineAdd() 10 1.871e-06 2.097e-06 2.448e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 41 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-42-g7437aa17d36f) finalized