Initializing AMReX (v2024-48-g47347f785f5c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (v2024-48-g47347f785f5c) initialized Starting run at 05:36:01 UTC on 2024-04-01. Successfully read inputs file ... Castro git describe: 24.03-38-gcd731a3af AMReX git describe: v2024-48-g47347f785 Microphysics git describe: 24.03-23-g3112c13a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014188764 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371358109 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.370332799 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331476867 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.3651059 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342602223 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.310837739 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312594456 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312211058 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313127445 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315345475 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007938767 seconds Ending run at 05:36:04 UTC on 2024-04-01. Run time = 3.557238513 Run time without initialization = 3.357577156 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.557 ... 3.557 ... 3.557 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3380 2.3785 2.4528 68.95% Gravity::make_radial_gravity() 21 0.293 0.3017 0.3136 8.81% check_for_negative_density() 10 0.02771 0.1061 0.1475 4.15% Castro::initData() 1 0.05873 0.09598 0.1361 3.83% Castro::estTimeStep() 21 0.02883 0.07439 0.1131 3.18% amrex::Copy() 193 0.06275 0.07539 0.08325 2.34% FabArray::setVal() 143 0.06189 0.06726 0.07309 2.05% FabArray::ParallelCopy_finish() 41 0.04602 0.0557 0.07228 2.03% Castro::reset_internal_energy(Fab) 1008 0.04683 0.0485 0.05045 1.42% Castro::normalize_species() 62 0.04144 0.04289 0.04486 1.26% FabArray::ParallelCopy_nowait() 41 0.03542 0.03905 0.04078 1.15% StateData::FillBoundary(geom) 41 0.03061 0.03198 0.03437 0.97% FillPatchIterator::Initialize 41 0.02823 0.03139 0.03322 0.93% Gravity::interpolate_monopole_grav() 21 0.02832 0.02917 0.03005 0.84% Castro::construct_new_gravity_source() 10 0.02055 0.02377 0.02586 0.73% Castro::computeTemp() 63 0.01914 0.01983 0.02063 0.58% Castro::initialize_do_advance() 10 0.01357 0.0167 0.01899 0.53% FabArray::Saxpy() 20 0.01022 0.01167 0.01268 0.36% Castro::initialize_advance() 10 0.005477 0.009899 0.01266 0.36% Amr::writePlotFile() 2 0.008033 0.01066 0.01242 0.35% FabArray::setDomainBndry() 41 0.006987 0.009963 0.01226 0.34% MultiFab::contains_nan() 20 0.009789 0.01076 0.01164 0.33% VisMF::Write(FabArray) 2 0.008473 0.009214 0.01163 0.33% Castro::construct_old_gravity_source() 10 0.006206 0.008821 0.009761 0.27% Castro::initMFs() 1 0.006653 0.007442 0.007752 0.22% StateData::define() 4 0.005512 0.006182 0.006545 0.18% Castro::enforce_min_density() 62 0.005655 0.005921 0.006424 0.18% Castro::construct_new_source() 50 0.005466 0.005829 0.006033 0.17% Gravity::get_new_grav_vector() 11 0.00267 0.003833 0.005182 0.15% Castro::swap_state_time_levels() 10 0.002828 0.003851 0.004231 0.12% main() 1 0.003413 0.003717 0.003961 0.11% Amr::coarseTimeStep() 10 0.00103 0.002414 0.003025 0.09% Gravity::get_old_grav_vector() 10 0.001648 0.001954 0.002358 0.07% Castro::buildMetrics() 1 0.001525 0.001828 0.002136 0.06% Castro::finalize_do_advance() 10 0.0003629 0.0009179 0.001099 0.03% AmrLevel::FillPatch() 41 0.0006848 0.0009511 0.001056 0.03% Amr::InitAmr() 1 0.0003461 0.0004061 0.0005714 0.02% Amr::timeStep() 10 0.0001798 0.0002213 0.0003899 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002711 0.0002934 0.0003216 0.01% DistributionMapping::LeastUsedCPUs() 1 2.578e-05 0.0001964 0.0002466 0.01% Castro::do_advance_ctu() 10 0.0001503 0.0001696 0.0001874 0.01% Castro::clean_state() 62 0.0001464 0.0001594 0.000173 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001135 0.0001298 0.0001458 0.00% Castro::Castro() 1 8.621e-05 0.0001075 0.0001335 0.00% StateDataPhysBCFunct::() 41 9.425e-05 0.0001117 0.0001257 0.00% Castro::do_old_sources() 10 9.376e-05 0.0001041 0.0001247 0.00% Castro::finalize_advance() 10 9.571e-05 0.000112 0.0001213 0.00% Castro::enforce_consistent_e() 1 7.983e-05 9.212e-05 0.0001142 0.00% FabArray::ParallelCopy() 41 7.516e-05 8.381e-05 9.222e-05 0.00% Amr::FinalizeInit() 1 3.366e-06 1.476e-05 9.026e-05 0.00% Castro::construct_old_source() 50 6.303e-05 7.474e-05 9.013e-05 0.00% FillPatchSingleLevel 41 7.252e-05 8.024e-05 8.517e-05 0.00% Castro::subcycle_advance_ctu() 10 4.169e-05 5.225e-05 8.294e-05 0.00% FabArrayBase::getCPC() 41 5.827e-05 6.676e-05 7.1e-05 0.00% Castro::do_new_sources() 10 5.903e-05 6.443e-05 6.86e-05 0.00% Amr::writeSmallPlotFile() 1 3.339e-05 4.617e-05 6.523e-05 0.00% Castro::advance() 10 3.842e-05 4.726e-05 6.242e-05 0.00% Castro::apply_source_to_state() 20 4.599e-05 4.944e-05 5.321e-05 0.00% Amr::defBaseLevel() 1 3.74e-05 4.33e-05 4.839e-05 0.00% Castro::construct_old_gravity() 10 3.425e-05 3.951e-05 4.578e-05 0.00% Castro::enforce_speed_limit() 62 2.757e-05 3.48e-05 4.233e-05 0.00% Castro::construct_new_gravity() 10 3.104e-05 3.622e-05 4.194e-05 0.00% FabArrayBase::CPC::define() 2 2.709e-05 3.146e-05 4.068e-05 0.00% Castro::check_for_nan() 20 2.176e-05 2.4e-05 2.737e-05 0.00% Castro::expand_state() 10 2.144e-05 2.381e-05 2.594e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.51e-05 1.668e-05 2.204e-05 0.00% Castro::FluxRegCrseInit 10 7.04e-06 9.967e-06 2.034e-05 0.00% Gravity::set_mass_offset() 10 1.292e-05 1.508e-05 1.862e-05 0.00% Castro::post_timestep() 10 1.332e-05 1.543e-05 1.747e-05 0.00% Gravity::swapTimeLevels() 10 4.618e-06 1.033e-05 1.242e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.364e-06 5.861e-06 1.206e-05 0.00% Amr::initSubcycle() 1 1.017e-05 1.114e-05 1.137e-05 0.00% Castro::computeNewDt() 9 7.113e-06 8.473e-06 1.09e-05 0.00% Castro::retry_advance_ctu() 10 6.677e-06 8.237e-06 9.491e-06 0.00% Amr::initialInit() 1 1.378e-06 2.411e-06 8.352e-06 0.00% Castro::create_source_corrector() 10 6.015e-06 6.93e-06 8.091e-06 0.00% Amr::InitializeInit() 1 1.921e-06 2.425e-06 5.152e-06 0.00% Castro::post_init() 1 2.613e-06 3.289e-06 4.93e-06 0.00% Castro::FluxRegFineAdd() 10 1.698e-06 2.257e-06 3.961e-06 0.00% Castro::computeInitialDt() 2 2.597e-06 3.234e-06 3.922e-06 0.00% Castro::post_regrid() 1 1.96e-06 2.935e-06 3.696e-06 0.00% Amr::init() 1 1.992e-06 2.4e-06 3.187e-06 0.00% DistributionMapping::Distribute() 1 1.077e-06 1.191e-06 1.529e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.557 3.557 3.557 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 94.05% Amr::timeStep() 10 3.332 3.333 3.334 93.73% Castro::advance() 10 3.316 3.317 3.317 93.25% Castro::subcycle_advance_ctu() 10 3.24 3.244 3.247 91.29% Castro::do_advance_ctu() 10 3.24 3.244 3.247 91.28% Castro::construct_ctu_hydro_source() 10 2.503 2.507 2.51 70.55% Gravity::make_radial_gravity() 21 0.3086 0.3173 0.3265 9.18% Gravity::get_new_grav_vector() 11 0.2137 0.216 0.2174 6.11% AmrLevel::FillPatch() 41 0.1872 0.1996 0.2087 5.87% Amr::init() 1 0.1989 0.1991 0.1992 5.60% Castro::construct_new_gravity() 10 0.192 0.1937 0.1947 5.47% Castro::construct_old_gravity() 10 0.1803 0.1849 0.1917 5.39% Gravity::get_old_grav_vector() 10 0.1796 0.1843 0.1907 5.36% Amr::initialInit() 1 0.1844 0.1846 0.1847 5.19% FillPatchIterator::Initialize 41 0.1583 0.1686 0.1754 4.93% Castro::initialize_do_advance() 10 0.1615 0.1678 0.1733 4.87% Amr::InitializeInit() 1 0.08175 0.1181 0.1587 4.46% Amr::defBaseLevel() 1 0.08174 0.1181 0.1587 4.46% check_for_negative_density() 10 0.02771 0.1061 0.1475 4.15% Castro::initData() 1 0.0627 0.09999 0.1398 3.93% FillPatchIterator::FillFromLevel0() 41 0.1204 0.1272 0.139 3.91% FillPatchSingleLevel 41 0.1202 0.1271 0.1388 3.90% Castro::expand_state() 10 0.1065 0.1149 0.1216 3.42% Castro::clean_state() 62 0.1133 0.1167 0.1211 3.40% Castro::estTimeStep() 21 0.02883 0.07439 0.1131 3.18% FabArray::ParallelCopy() 41 0.08567 0.09493 0.1079 3.03% Amr::FinalizeInit() 1 0.02599 0.06655 0.1028 2.89% Castro::do_old_sources() 10 0.08669 0.09007 0.09186 2.58% amrex::Copy() 193 0.06275 0.07539 0.08325 2.34% Castro::computeInitialDt() 2 0.002305 0.04288 0.07906 2.22% Castro::initialize_advance() 10 0.06595 0.06895 0.07355 2.07% FabArray::setVal() 143 0.06189 0.06726 0.07309 2.05% FabArray::ParallelCopy_finish() 41 0.04602 0.0557 0.07228 2.03% Castro::computeTemp() 63 0.06641 0.06863 0.07081 1.99% Castro::do_new_sources() 10 0.05509 0.06296 0.06997 1.97% Castro::reset_internal_energy(MultiFab) 63 0.0471 0.0488 0.05074 1.43% Castro::reset_internal_energy(Fab) 1008 0.04683 0.0485 0.05045 1.42% Castro::normalize_species() 62 0.04144 0.04289 0.04486 1.26% FabArray::ParallelCopy_nowait() 41 0.03553 0.03915 0.04087 1.15% StateDataPhysBCFunct::() 41 0.03073 0.0321 0.03448 0.97% StateData::FillBoundary(geom) 41 0.03061 0.03198 0.03437 0.97% Castro::construct_new_source() 50 0.02602 0.0296 0.03176 0.89% Castro::finalize_do_advance() 10 0.01551 0.02306 0.03043 0.86% Gravity::interpolate_monopole_grav() 21 0.02832 0.02917 0.03005 0.84% Castro::construct_new_gravity_source() 10 0.02055 0.02377 0.02586 0.73% Castro::post_init() 1 0.02314 0.0233 0.02337 0.66% Amr::writePlotFile() 2 0.02239 0.02249 0.02276 0.64% Castro::post_timestep() 10 0.01546 0.01595 0.01662 0.47% Castro::apply_source_to_state() 20 0.01027 0.01172 0.01273 0.36% FabArray::Saxpy() 20 0.01022 0.01167 0.01268 0.36% Castro::Castro() 1 0.009484 0.01164 0.01253 0.35% FabArray::setDomainBndry() 41 0.006987 0.009963 0.01226 0.34% Castro::check_for_nan() 20 0.009813 0.01079 0.01166 0.33% MultiFab::contains_nan() 20 0.009789 0.01076 0.01164 0.33% VisMF::Write(FabArray) 2 0.008473 0.009214 0.01163 0.33% Castro::construct_old_source() 50 0.006269 0.008896 0.009851 0.28% Castro::construct_old_gravity_source() 10 0.006206 0.008821 0.009761 0.27% Castro::computeNewDt() 9 0.00937 0.009381 0.009395 0.26% Castro::initMFs() 1 0.006653 0.007442 0.007752 0.22% AmrLevel::AmrLevel(dm) 1 0.005529 0.006199 0.006561 0.18% StateData::define() 4 0.005512 0.006182 0.006545 0.18% Castro::enforce_min_density() 62 0.005655 0.005921 0.006424 0.18% Castro::swap_state_time_levels() 10 0.002828 0.003851 0.004231 0.12% Castro::finalize_advance() 10 0.00295 0.003356 0.003901 0.11% Castro::buildMetrics() 1 0.001644 0.001975 0.002289 0.06% Castro::post_regrid() 1 0.001424 0.001512 0.001604 0.05% Amr::InitAmr() 1 0.0003563 0.0004173 0.0005827 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.937e-05 0.0002035 0.0002539 0.01% DistributionMapping::LeastUsedCPUs() 1 2.578e-05 0.0001964 0.0002466 0.01% Castro::enforce_consistent_e() 1 7.983e-05 9.212e-05 0.0001142 0.00% FabArrayBase::getCPC() 41 8.55e-05 9.823e-05 0.0001114 0.00% Amr::writeSmallPlotFile() 1 3.339e-05 4.617e-05 6.523e-05 0.00% Castro::enforce_speed_limit() 62 2.757e-05 3.48e-05 4.233e-05 0.00% FabArrayBase::CPC::define() 2 2.709e-05 3.146e-05 4.068e-05 0.00% Castro::FluxRegCrseInit 10 7.04e-06 9.967e-06 2.034e-05 0.00% Gravity::set_mass_offset() 10 1.292e-05 1.508e-05 1.862e-05 0.00% Gravity::swapTimeLevels() 10 4.618e-06 1.033e-05 1.242e-05 0.00% Amr::initSubcycle() 1 1.017e-05 1.114e-05 1.137e-05 0.00% Castro::retry_advance_ctu() 10 6.677e-06 8.237e-06 9.491e-06 0.00% Castro::create_source_corrector() 10 6.015e-06 6.93e-06 8.091e-06 0.00% Castro::FluxRegFineAdd() 10 1.698e-06 2.257e-06 3.961e-06 0.00% DistributionMapping::Distribute() 1 1.077e-06 1.191e-06 1.529e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 38 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (v2024-48-g47347f785f5c) finalized