Initializing AMReX (24.04-2-gf2536be82d98)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-2-gf2536be82d98) initialized Starting run at 05:38:07 UTC on 2024-04-02. Successfully read inputs file ... Castro git describe: 24.04 AMReX git describe: 24.04-2-gf2536be82 Microphysics git describe: 24.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015646026 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36056543 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34357792 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32282914 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.349780338 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371743804 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.306506066 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.303737593 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.303153138 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.305644202 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.304360305 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007444026 seconds Ending run at 05:38:11 UTC on 2024-04-02. Run time = 3.491088409 Run time without initialization = 3.283946638 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.491 ... 3.491 ... 3.491 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2568 2.3060 2.3378 66.96% Gravity::make_radial_gravity() 21 0.2881 0.2956 0.3085 8.84% check_for_negative_density() 10 0.05573 0.09128 0.1421 4.07% Castro::initData() 1 0.05749 0.09627 0.1376 3.94% Castro::estTimeStep() 21 0.02456 0.08606 0.1281 3.67% FabArray::ParallelCopy_finish() 41 0.03733 0.06122 0.1067 3.06% amrex::Copy() 193 0.06301 0.07677 0.08614 2.47% FabArray::setVal() 143 0.05332 0.06901 0.08179 2.34% Castro::reset_internal_energy(Fab) 1008 0.04394 0.04647 0.04902 1.40% Castro::normalize_species() 62 0.04105 0.04216 0.0439 1.26% FabArray::ParallelCopy_nowait() 41 0.0318 0.03833 0.04034 1.16% Castro::construct_new_gravity_source() 10 0.02216 0.02502 0.03891 1.11% FillPatchIterator::Initialize 41 0.02661 0.0327 0.03712 1.06% StateData::FillBoundary(geom) 41 0.02898 0.03138 0.03317 0.95% Gravity::interpolate_monopole_grav() 21 0.02793 0.02887 0.02965 0.85% Castro::initialize_do_advance() 10 0.01161 0.0178 0.02179 0.62% Castro::computeTemp() 63 0.01782 0.01888 0.01991 0.57% FabArray::setDomainBndry() 41 0.008351 0.01199 0.01391 0.40% Amr::writePlotFile() 2 0.008653 0.01198 0.01385 0.40% FabArray::Saxpy() 20 0.01029 0.01184 0.01274 0.36% Castro::initialize_advance() 10 0.00536 0.00979 0.01249 0.36% VisMF::Write(FabArray) 2 0.008199 0.009275 0.01234 0.35% MultiFab::contains_nan() 20 0.01053 0.01108 0.01205 0.35% Castro::construct_old_gravity_source() 10 0.006422 0.008627 0.00941 0.27% Castro::initMFs() 1 0.006848 0.007836 0.008191 0.23% Castro::enforce_min_density() 62 0.007137 0.00734 0.007802 0.22% Amr::coarseTimeStep() 10 0.001397 0.005088 0.007431 0.21% StateData::define() 4 0.005842 0.006615 0.006845 0.20% Castro::construct_new_source() 50 0.005681 0.00605 0.006327 0.18% Castro::swap_state_time_levels() 10 0.002751 0.003808 0.004145 0.12% main() 1 0.003452 0.003777 0.003914 0.11% Gravity::get_new_grav_vector() 11 0.002866 0.003502 0.003841 0.11% Gravity::get_old_grav_vector() 10 0.00153 0.001876 0.002183 0.06% Castro::buildMetrics() 1 0.001621 0.001844 0.002038 0.06% AmrLevel::FillPatch() 41 0.0006719 0.0009278 0.001173 0.03% Castro::finalize_do_advance() 10 0.0004327 0.001004 0.001165 0.03% Amr::InitAmr() 1 0.0003522 0.0004059 0.0005857 0.02% Amr::timeStep() 10 0.0001662 0.000212 0.0003986 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002885 0.0003 0.0003187 0.01% DistributionMapping::LeastUsedCPUs() 1 3.031e-05 0.0002185 0.0002726 0.01% Castro::do_advance_ctu() 10 0.00014 0.0001692 0.0002034 0.01% Castro::clean_state() 62 0.000141 0.0001517 0.0001643 0.00% Castro::finalize_advance() 10 0.000109 0.0001275 0.0001444 0.00% Castro::Castro() 1 8.316e-05 0.0001046 0.0001268 0.00% FillPatchIterator::FillFromLevel0() 41 9.694e-05 0.0001066 0.000122 0.00% StateDataPhysBCFunct::() 41 8.315e-05 9.605e-05 0.0001031 0.00% Castro::do_old_sources() 10 7.071e-05 8.808e-05 9.817e-05 0.00% Castro::enforce_consistent_e() 1 8.122e-05 8.817e-05 9.533e-05 0.00% FabArray::ParallelCopy() 41 7.197e-05 8.18e-05 9.166e-05 0.00% Castro::construct_old_source() 50 5.405e-05 7.329e-05 9.088e-05 0.00% FillPatchSingleLevel 41 7.105e-05 7.673e-05 8.304e-05 0.00% Amr::FinalizeInit() 1 3.369e-06 1.335e-05 7.85e-05 0.00% Castro::do_new_sources() 10 5.651e-05 6.322e-05 7.04e-05 0.00% Amr::defBaseLevel() 1 5.13e-05 5.531e-05 6.512e-05 0.00% Castro::advance() 10 4.047e-05 4.888e-05 6.117e-05 0.00% FabArrayBase::getCPC() 41 5.141e-05 5.656e-05 6.103e-05 0.00% Amr::writeSmallPlotFile() 1 3.363e-05 4.749e-05 5.919e-05 0.00% Castro::apply_source_to_state() 20 3.876e-05 4.672e-05 5.32e-05 0.00% Castro::subcycle_advance_ctu() 10 3.256e-05 4.311e-05 5.13e-05 0.00% Castro::retry_advance_ctu() 10 7.307e-06 2.16e-05 4.441e-05 0.00% Castro::construct_old_gravity() 10 3.241e-05 3.736e-05 4.244e-05 0.00% Castro::construct_new_gravity() 10 2.938e-05 3.539e-05 4.11e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 3.037e-05 3.407e-05 0.00% FabArrayBase::CPC::define() 2 2.567e-05 2.883e-05 3.363e-05 0.00% Castro::expand_state() 10 1.823e-05 2.227e-05 2.498e-05 0.00% Gravity::swapTimeLevels() 10 6.559e-06 1.109e-05 2.482e-05 0.00% Castro::check_for_nan() 20 1.925e-05 2.059e-05 2.209e-05 0.00% Gravity::set_mass_offset() 10 1.197e-05 1.777e-05 2.063e-05 0.00% Castro::post_timestep() 10 1.351e-05 1.665e-05 1.904e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.051e-05 1.226e-05 1.453e-05 0.00% Castro::FluxRegCrseInit 10 7.38e-06 1.001e-05 1.353e-05 0.00% Castro::computeNewDt() 9 7.99e-06 9.664e-06 1.24e-05 0.00% Amr::initSubcycle() 1 1.147e-05 1.175e-05 1.211e-05 0.00% Castro::post_init() 1 8.378e-06 9.314e-06 1.07e-05 0.00% Castro::create_source_corrector() 10 6.521e-06 7.543e-06 9.253e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.176e-06 4.921e-06 8.059e-06 0.00% Amr::InitializeInit() 1 3.062e-06 3.698e-06 6.414e-06 0.00% Castro::post_regrid() 1 2.35e-06 3.033e-06 4.389e-06 0.00% Castro::computeInitialDt() 2 3.088e-06 3.579e-06 4.223e-06 0.00% Amr::init() 1 1.97e-06 2.343e-06 2.914e-06 0.00% Amr::initialInit() 1 1.403e-06 1.771e-06 2.851e-06 0.00% Castro::FluxRegFineAdd() 10 1.957e-06 2.233e-06 2.542e-06 0.00% DistributionMapping::Distribute() 1 1.157e-06 1.355e-06 2.158e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.491 3.491 3.491 100.00% Amr::coarseTimeStep() 10 3.273 3.273 3.273 93.74% Amr::timeStep() 10 3.255 3.257 3.261 93.40% Castro::advance() 10 3.238 3.24 3.241 92.84% Castro::subcycle_advance_ctu() 10 3.157 3.166 3.181 91.11% Castro::do_advance_ctu() 10 3.157 3.166 3.181 91.11% Castro::construct_ctu_hydro_source() 10 2.415 2.418 2.42 69.32% Gravity::make_radial_gravity() 21 0.3044 0.3116 0.3219 9.22% AmrLevel::FillPatch() 41 0.1844 0.207 0.2278 6.52% Gravity::get_new_grav_vector() 11 0.2072 0.2085 0.2101 6.02% Amr::init() 1 0.2063 0.2065 0.2066 5.92% FillPatchIterator::Initialize 41 0.1556 0.1761 0.2029 5.81% Castro::construct_old_gravity() 10 0.1821 0.1866 0.1957 5.60% Gravity::get_old_grav_vector() 10 0.1809 0.1857 0.1951 5.59% Amr::initialInit() 1 0.1903 0.1904 0.1905 5.46% Castro::construct_new_gravity() 10 0.1822 0.183 0.1843 5.28% Castro::initialize_do_advance() 10 0.1606 0.1719 0.1783 5.11% FillPatchIterator::FillFromLevel0() 41 0.1096 0.1314 0.1679 4.81% FillPatchSingleLevel 41 0.1095 0.1313 0.1678 4.81% Amr::InitializeInit() 1 0.08159 0.1195 0.1613 4.62% Amr::defBaseLevel() 1 0.08159 0.1195 0.1613 4.62% check_for_negative_density() 10 0.05573 0.09128 0.1421 4.07% Castro::initData() 1 0.0616 0.1003 0.1416 4.05% FabArray::ParallelCopy() 41 0.07616 0.09971 0.1387 3.97% Castro::expand_state() 10 0.1039 0.1183 0.1307 3.74% Castro::estTimeStep() 21 0.02456 0.08606 0.1281 3.67% Castro::clean_state() 62 0.11 0.1144 0.119 3.41% Amr::FinalizeInit() 1 0.02913 0.07093 0.1088 3.12% FabArray::ParallelCopy_finish() 41 0.03733 0.06122 0.1067 3.06% Castro::do_old_sources() 10 0.09145 0.09458 0.09652 2.76% amrex::Copy() 193 0.06301 0.07677 0.08614 2.47% Castro::computeInitialDt() 2 0.002406 0.04422 0.08213 2.35% Castro::do_new_sources() 10 0.05846 0.06313 0.08193 2.35% FabArray::setVal() 143 0.05332 0.06901 0.08179 2.34% Castro::initialize_advance() 10 0.05442 0.06962 0.07895 2.26% Castro::computeTemp() 63 0.06214 0.06565 0.06925 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04423 0.04677 0.04934 1.41% Castro::reset_internal_energy(Fab) 1008 0.04394 0.04647 0.04902 1.40% Castro::construct_new_source() 50 0.02823 0.03107 0.04524 1.30% Castro::normalize_species() 62 0.04105 0.04216 0.0439 1.26% FabArray::ParallelCopy_nowait() 41 0.03188 0.03841 0.04041 1.16% Castro::construct_new_gravity_source() 10 0.02216 0.02502 0.03891 1.11% Castro::finalize_do_advance() 10 0.01403 0.03364 0.0388 1.11% StateDataPhysBCFunct::() 41 0.02907 0.03147 0.03326 0.95% StateData::FillBoundary(geom) 41 0.02898 0.03138 0.03317 0.95% Gravity::interpolate_monopole_grav() 21 0.02793 0.02887 0.02965 0.85% Castro::post_init() 1 0.02624 0.02643 0.02658 0.76% Amr::writePlotFile() 2 0.02338 0.02367 0.02382 0.68% Castro::post_timestep() 10 0.01596 0.01694 0.01934 0.55% FabArray::setDomainBndry() 41 0.008351 0.01199 0.01391 0.40% Castro::Castro() 1 0.009841 0.01228 0.01296 0.37% Castro::apply_source_to_state() 20 0.01033 0.01189 0.01279 0.37% FabArray::Saxpy() 20 0.01029 0.01184 0.01274 0.36% VisMF::Write(FabArray) 2 0.008199 0.009275 0.01234 0.35% Castro::check_for_nan() 20 0.01055 0.0111 0.01207 0.35% MultiFab::contains_nan() 20 0.01053 0.01108 0.01205 0.35% Castro::construct_old_source() 50 0.006476 0.0087 0.009501 0.27% Castro::construct_old_gravity_source() 10 0.006422 0.008627 0.00941 0.27% Castro::computeNewDt() 9 0.009206 0.009222 0.009232 0.26% Castro::initMFs() 1 0.006848 0.007836 0.008191 0.23% Castro::enforce_min_density() 62 0.007137 0.00734 0.007802 0.22% AmrLevel::AmrLevel(dm) 1 0.005852 0.006627 0.006859 0.20% StateData::define() 4 0.005842 0.006615 0.006845 0.20% Castro::finalize_advance() 10 0.002906 0.003887 0.005042 0.14% Castro::swap_state_time_levels() 10 0.002751 0.003808 0.004145 0.12% Castro::buildMetrics() 1 0.001751 0.001998 0.002197 0.06% Castro::post_regrid() 1 0.001435 0.001546 0.001965 0.06% Amr::InitAmr() 1 0.000364 0.0004176 0.0005974 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.599e-05 0.0002248 0.0002828 0.01% DistributionMapping::LeastUsedCPUs() 1 3.031e-05 0.0002185 0.0002726 0.01% Castro::enforce_consistent_e() 1 8.122e-05 8.817e-05 9.533e-05 0.00% FabArrayBase::getCPC() 41 7.86e-05 8.539e-05 9.389e-05 0.00% Amr::writeSmallPlotFile() 1 3.363e-05 4.749e-05 5.919e-05 0.00% Castro::retry_advance_ctu() 10 7.307e-06 2.16e-05 4.441e-05 0.00% Castro::enforce_speed_limit() 62 2.409e-05 3.037e-05 3.407e-05 0.00% FabArrayBase::CPC::define() 2 2.567e-05 2.883e-05 3.363e-05 0.00% Gravity::swapTimeLevels() 10 6.559e-06 1.109e-05 2.482e-05 0.00% Gravity::set_mass_offset() 10 1.197e-05 1.777e-05 2.063e-05 0.00% Castro::FluxRegCrseInit 10 7.38e-06 1.001e-05 1.353e-05 0.00% Amr::initSubcycle() 1 1.147e-05 1.175e-05 1.211e-05 0.00% Castro::create_source_corrector() 10 6.521e-06 7.543e-06 9.253e-06 0.00% Castro::FluxRegFineAdd() 10 1.957e-06 2.233e-06 2.542e-06 0.00% DistributionMapping::Distribute() 1 1.157e-06 1.355e-06 2.158e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 40 B 43 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-2-gf2536be82d98) finalized