Initializing AMReX (24.04-3-gd78e241d1ad4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-3-gd78e241d1ad4) initialized Starting run at 05:29:26 UTC on 2024-04-03. Successfully read inputs file ... Castro git describe: 24.04-1-g6930369b2 AMReX git describe: 24.04-3-gd78e241d1 Microphysics git describe: 24.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014550353 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362808905 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.332832766 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341840589 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343176485 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35693031 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.309600121 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309728255 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310407494 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308623476 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309425618 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.060971548 seconds Ending run at 05:29:29 UTC on 2024-04-03. Run time = 3.557979206 Run time without initialization = 3.351060434 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.557 ... 3.558 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2965 2.3249 2.3796 66.88% Gravity::make_radial_gravity() 21 0.2926 0.2986 0.3056 8.59% Castro::estTimeStep() 21 0.03278 0.08471 0.1428 4.01% Castro::initData() 1 0.04938 0.09483 0.1424 4.00% check_for_negative_density() 10 0.03351 0.09007 0.1215 3.42% FabArray::ParallelCopy_finish() 41 0.03713 0.05733 0.09676 2.72% amrex::Copy() 193 0.06228 0.07664 0.08319 2.34% FabArray::setVal() 143 0.05779 0.06768 0.07703 2.17% Amr::writePlotFile() 2 0.06128 0.06365 0.06573 1.85% Castro::reset_internal_energy(Fab) 1008 0.0462 0.04754 0.04853 1.36% Castro::normalize_species() 62 0.042 0.04293 0.04431 1.25% FabArray::ParallelCopy_nowait() 41 0.03159 0.03796 0.03964 1.11% FillPatchIterator::Initialize 41 0.02675 0.03252 0.03747 1.05% Castro::construct_new_gravity_source() 10 0.02078 0.02626 0.036 1.01% StateData::FillBoundary(geom) 41 0.02896 0.03106 0.033 0.93% Gravity::interpolate_monopole_grav() 21 0.02756 0.02943 0.03035 0.85% Castro::initialize_do_advance() 10 0.0115 0.01784 0.02117 0.60% Castro::computeTemp() 63 0.01967 0.01994 0.02027 0.57% FabArray::Saxpy() 20 0.009812 0.01254 0.01631 0.46% FabArray::setDomainBndry() 41 0.008662 0.01222 0.01432 0.40% MultiFab::contains_nan() 20 0.01004 0.01094 0.01289 0.36% Castro::initialize_advance() 10 0.00535 0.009588 0.01238 0.35% Castro::construct_new_source() 50 0.005543 0.007883 0.01206 0.34% VisMF::Write(FabArray) 2 0.008289 0.009341 0.01181 0.33% Castro::construct_old_gravity_source() 10 0.00606 0.008521 0.009166 0.26% Castro::enforce_min_density() 62 0.007186 0.007408 0.007942 0.22% Castro::initMFs() 1 0.006639 0.007312 0.007693 0.22% StateData::define() 4 0.005526 0.006169 0.006592 0.19% Castro::swap_state_time_levels() 10 0.002723 0.003855 0.004236 0.12% Amr::coarseTimeStep() 10 0.001464 0.002359 0.004053 0.11% main() 1 0.003198 0.003512 0.003839 0.11% Gravity::get_new_grav_vector() 11 0.002835 0.003472 0.003731 0.10% Gravity::get_old_grav_vector() 10 0.00156 0.001942 0.002276 0.06% Castro::buildMetrics() 1 0.001497 0.001669 0.001813 0.05% AmrLevel::FillPatch() 41 0.0006189 0.0009334 0.001149 0.03% Castro::finalize_do_advance() 10 0.0003422 0.0009114 0.001109 0.03% Amr::InitAmr() 1 0.0003573 0.0004465 0.0008194 0.02% DistributionMapping::LeastUsedCPUs() 1 3.382e-05 0.0004332 0.0005242 0.01% Amr::timeStep() 10 0.000165 0.0002223 0.0005058 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002665 0.0002814 0.0003015 0.01% Castro::do_advance_ctu() 10 0.0001388 0.0001728 0.0001996 0.01% Castro::clean_state() 62 0.0001362 0.0001533 0.0001783 0.01% Castro::finalize_advance() 10 9.8e-05 0.0001201 0.0001398 0.00% StateDataPhysBCFunct::() 41 9.432e-05 0.0001045 0.0001261 0.00% FillPatchIterator::FillFromLevel0() 41 9.645e-05 0.0001054 0.0001218 0.00% Castro::Castro() 1 7.928e-05 9.526e-05 0.0001122 0.00% Castro::enforce_consistent_e() 1 8.076e-05 8.96e-05 0.0001056 0.00% Castro::construct_old_source() 50 4.991e-05 7.61e-05 0.000105 0.00% Castro::do_old_sources() 10 7.17e-05 8.476e-05 0.000104 0.00% FabArray::ParallelCopy() 41 7.819e-05 8.481e-05 0.0001001 0.00% FillPatchSingleLevel 41 6.708e-05 7.484e-05 9.65e-05 0.00% Amr::FinalizeInit() 1 3.323e-06 1.539e-05 9.304e-05 0.00% Castro::do_new_sources() 10 4.918e-05 6.901e-05 8.896e-05 0.00% Castro::apply_source_to_state() 20 3.371e-05 4.876e-05 6.733e-05 0.00% FabArrayBase::getCPC() 41 4.96e-05 5.7e-05 6.671e-05 0.00% Amr::writeSmallPlotFile() 1 3.374e-05 4.846e-05 5.733e-05 0.00% Castro::advance() 10 4.074e-05 4.615e-05 5.438e-05 0.00% Amr::defBaseLevel() 1 4.034e-05 4.563e-05 5.213e-05 0.00% Castro::subcycle_advance_ctu() 10 3.504e-05 3.952e-05 4.877e-05 0.00% Castro::construct_old_gravity() 10 3.221e-05 3.736e-05 4.406e-05 0.00% Castro::construct_new_gravity() 10 3.042e-05 3.534e-05 4.089e-05 0.00% Castro::post_timestep() 10 1.36e-05 1.849e-05 3.494e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.967e-05 3.356e-05 0.00% Gravity::set_mass_offset() 10 1.261e-05 2.053e-05 3.244e-05 0.00% Amr::initSubcycle() 1 1.122e-05 1.427e-05 3.233e-05 0.00% FabArrayBase::CPC::define() 2 2.507e-05 2.832e-05 3.192e-05 0.00% Castro::expand_state() 10 1.838e-05 2.072e-05 2.477e-05 0.00% Castro::check_for_nan() 20 1.868e-05 2.099e-05 2.427e-05 0.00% Castro::retry_advance_ctu() 10 6.762e-06 1.035e-05 1.927e-05 0.00% Castro::post_init() 1 7.554e-06 9.235e-06 1.401e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.782e-06 1.133e-05 1.351e-05 0.00% Gravity::swapTimeLevels() 10 6.2e-06 9.796e-06 1.171e-05 0.00% Castro::computeNewDt() 9 7.84e-06 9.493e-06 1.165e-05 0.00% Castro::FluxRegCrseInit 10 6.739e-06 8.562e-06 9.96e-06 0.00% Castro::create_source_corrector() 10 6.184e-06 7.181e-06 9.034e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.155e-06 4.907e-06 8.014e-06 0.00% Amr::InitializeInit() 1 2.848e-06 3.681e-06 7.265e-06 0.00% Castro::computeInitialDt() 2 3.171e-06 3.599e-06 4.122e-06 0.00% Castro::post_regrid() 1 2.21e-06 2.804e-06 3.773e-06 0.00% Castro::FluxRegFineAdd() 10 1.869e-06 2.314e-06 3.48e-06 0.00% Amr::init() 1 1.898e-06 2.197e-06 2.846e-06 0.00% Amr::initialInit() 1 1.391e-06 1.86e-06 2.456e-06 0.00% DistributionMapping::Distribute() 1 1.123e-06 1.226e-06 1.453e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.557 3.558 3.558 100.00% Amr::coarseTimeStep() 10 3.286 3.286 3.286 92.36% Amr::timeStep() 10 3.272 3.274 3.275 92.03% Castro::advance() 10 3.256 3.257 3.259 91.58% Castro::subcycle_advance_ctu() 10 3.175 3.184 3.198 89.88% Castro::do_advance_ctu() 10 3.175 3.184 3.198 89.88% Castro::construct_ctu_hydro_source() 10 2.434 2.436 2.44 68.59% Gravity::make_radial_gravity() 21 0.3093 0.3148 0.3196 8.98% AmrLevel::FillPatch() 41 0.1861 0.2028 0.2183 6.14% Gravity::get_new_grav_vector() 11 0.2051 0.2063 0.2073 5.83% Amr::init() 1 0.2059 0.2063 0.2064 5.80% Castro::construct_old_gravity() 10 0.1885 0.1916 0.1943 5.46% Gravity::get_old_grav_vector() 10 0.1874 0.1907 0.1936 5.44% FillPatchIterator::Initialize 41 0.1553 0.1715 0.1932 5.43% Amr::initialInit() 1 0.1912 0.1918 0.192 5.40% Castro::initialize_do_advance() 10 0.1648 0.1736 0.1853 5.21% Castro::construct_new_gravity() 10 0.1821 0.1833 0.1844 5.18% Amr::InitializeInit() 1 0.06841 0.1168 0.1652 4.64% Amr::defBaseLevel() 1 0.0684 0.1168 0.1652 4.64% FillPatchIterator::FillFromLevel0() 41 0.1098 0.1268 0.1578 4.43% FillPatchSingleLevel 41 0.1097 0.1267 0.1577 4.43% Castro::initData() 1 0.05311 0.09882 0.1462 4.11% Castro::estTimeStep() 21 0.03278 0.08471 0.1428 4.01% Castro::expand_state() 10 0.106 0.1185 0.1333 3.75% FabArray::ParallelCopy() 41 0.07683 0.09546 0.1285 3.61% Amr::FinalizeInit() 1 0.0267 0.075 0.1227 3.45% check_for_negative_density() 10 0.03351 0.09007 0.1215 3.42% Castro::clean_state() 62 0.1154 0.1173 0.1189 3.34% Castro::computeInitialDt() 2 0.002242 0.05059 0.09853 2.77% FabArray::ParallelCopy_finish() 41 0.03713 0.05733 0.09676 2.72% Castro::do_old_sources() 10 0.08713 0.09065 0.09302 2.61% amrex::Copy() 193 0.06228 0.07664 0.08319 2.34% Castro::do_new_sources() 10 0.05512 0.06777 0.08088 2.27% Castro::initialize_advance() 10 0.05476 0.06971 0.07876 2.21% FabArray::setVal() 143 0.05779 0.06768 0.07703 2.17% Amr::writePlotFile() 2 0.07547 0.07562 0.07584 2.13% Castro::computeTemp() 63 0.06617 0.06776 0.06908 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04648 0.04782 0.0488 1.37% Castro::reset_internal_energy(Fab) 1008 0.0462 0.04754 0.04853 1.36% Castro::normalize_species() 62 0.042 0.04293 0.04431 1.25% Castro::construct_new_source() 50 0.02632 0.03415 0.0434 1.22% FabArray::ParallelCopy_nowait() 41 0.03167 0.03805 0.03972 1.12% Castro::finalize_do_advance() 10 0.01176 0.0259 0.03853 1.08% Castro::construct_new_gravity_source() 10 0.02078 0.02626 0.036 1.01% StateDataPhysBCFunct::() 41 0.02909 0.03116 0.03309 0.93% StateData::FillBoundary(geom) 41 0.02896 0.03106 0.033 0.93% Gravity::interpolate_monopole_grav() 21 0.02756 0.02943 0.03035 0.85% Castro::post_init() 1 0.02363 0.02392 0.02406 0.68% Castro::post_timestep() 10 0.01573 0.01628 0.01725 0.48% Castro::apply_source_to_state() 20 0.00985 0.01258 0.01638 0.46% FabArray::Saxpy() 20 0.009812 0.01254 0.01631 0.46% FabArray::setDomainBndry() 41 0.008662 0.01222 0.01432 0.40% Castro::check_for_nan() 20 0.01006 0.01096 0.01291 0.36% MultiFab::contains_nan() 20 0.01004 0.01094 0.01289 0.36% Castro::Castro() 1 0.009653 0.01127 0.012 0.34% VisMF::Write(FabArray) 2 0.008289 0.009341 0.01181 0.33% Castro::construct_old_source() 50 0.00611 0.008597 0.009271 0.26% Castro::computeNewDt() 9 0.00913 0.00915 0.00917 0.26% Castro::construct_old_gravity_source() 10 0.00606 0.008521 0.009166 0.26% Castro::enforce_min_density() 62 0.007186 0.007408 0.007942 0.22% Castro::initMFs() 1 0.006639 0.007312 0.007693 0.22% AmrLevel::AmrLevel(dm) 1 0.00554 0.006181 0.006604 0.19% StateData::define() 4 0.005526 0.006169 0.006592 0.19% Castro::finalize_advance() 10 0.00291 0.003773 0.004961 0.14% Castro::swap_state_time_levels() 10 0.002723 0.003855 0.004236 0.12% Castro::buildMetrics() 1 0.001611 0.001808 0.001956 0.05% Castro::post_regrid() 1 0.001489 0.001581 0.001621 0.05% Amr::InitAmr() 1 0.0003685 0.0004607 0.0008517 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.98e-05 0.0004394 0.0005337 0.01% DistributionMapping::LeastUsedCPUs() 1 3.382e-05 0.0004332 0.0005242 0.01% Castro::enforce_consistent_e() 1 8.076e-05 8.96e-05 0.0001056 0.00% FabArrayBase::getCPC() 41 7.496e-05 8.532e-05 9.863e-05 0.00% Amr::writeSmallPlotFile() 1 3.374e-05 4.846e-05 5.733e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.967e-05 3.356e-05 0.00% Gravity::set_mass_offset() 10 1.261e-05 2.053e-05 3.244e-05 0.00% Amr::initSubcycle() 1 1.122e-05 1.427e-05 3.233e-05 0.00% FabArrayBase::CPC::define() 2 2.507e-05 2.832e-05 3.192e-05 0.00% Castro::retry_advance_ctu() 10 6.762e-06 1.035e-05 1.927e-05 0.00% Gravity::swapTimeLevels() 10 6.2e-06 9.796e-06 1.171e-05 0.00% Castro::FluxRegCrseInit 10 6.739e-06 8.562e-06 9.96e-06 0.00% Castro::create_source_corrector() 10 6.184e-06 7.181e-06 9.034e-06 0.00% Castro::FluxRegFineAdd() 10 1.869e-06 2.314e-06 3.48e-06 0.00% DistributionMapping::Distribute() 1 1.123e-06 1.226e-06 1.453e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 38 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-3-gd78e241d1ad4) finalized