Initializing AMReX (24.04-6-g771c439170bf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-6-g771c439170bf) initialized Starting run at 05:21:55 UTC on 2024-04-05. Successfully read inputs file ... Castro git describe: 24.04-3-g0462ceb8e AMReX git describe: 24.04-6-g771c43917 Microphysics git describe: 24.04-3-gd82c8c88 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015491286 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363707011 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341524365 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324207738 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.365036958 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325690215 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.307116622 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31043963 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308942799 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311211505 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311325826 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007509424 seconds Ending run at 05:21:58 UTC on 2024-04-05. Run time = 3.493093864 Run time without initialization = 3.281297562 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.492 ... 3.493 ... 3.493 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2998 2.3421 2.3915 68.46% Gravity::make_radial_gravity() 21 0.2942 0.3024 0.3176 9.09% Castro::initData() 1 0.0486 0.09237 0.1428 4.09% check_for_negative_density() 10 0.03515 0.08792 0.1323 3.79% Castro::estTimeStep() 21 0.02349 0.08011 0.119 3.41% amrex::Copy() 193 0.06131 0.07372 0.08281 2.37% FabArray::ParallelCopy_finish() 41 0.03635 0.04952 0.08117 2.32% FabArray::setVal() 143 0.05876 0.0653 0.07353 2.10% Castro::reset_internal_energy(Fab) 1008 0.04507 0.04737 0.04927 1.41% Castro::normalize_species() 62 0.04143 0.04297 0.04511 1.29% FabArray::ParallelCopy_nowait() 41 0.03306 0.03791 0.03915 1.12% FillPatchIterator::Initialize 41 0.02726 0.0311 0.0335 0.96% StateData::FillBoundary(geom) 41 0.02863 0.0307 0.03323 0.95% Gravity::interpolate_monopole_grav() 21 0.02789 0.02916 0.0299 0.86% Castro::construct_new_gravity_source() 10 0.02164 0.02386 0.02615 0.75% Castro::computeTemp() 63 0.01806 0.01994 0.02047 0.59% Castro::initialize_do_advance() 10 0.01203 0.01596 0.01798 0.51% Amr::writePlotFile() 2 0.008382 0.0119 0.01396 0.40% FabArray::setDomainBndry() 41 0.008802 0.01149 0.01355 0.39% FabArray::Saxpy() 20 0.01013 0.01165 0.01257 0.36% VisMF::Write(FabArray) 2 0.00851 0.009402 0.01239 0.35% Castro::initialize_advance() 10 0.005491 0.009858 0.01218 0.35% MultiFab::contains_nan() 20 0.009186 0.009915 0.01089 0.31% Castro::initMFs() 1 0.00647 0.007341 0.01036 0.30% Castro::construct_old_gravity_source() 10 0.00646 0.008726 0.009227 0.26% StateData::define() 4 0.00528 0.005996 0.00838 0.24% Castro::enforce_min_density() 62 0.005666 0.005969 0.006342 0.18% Castro::construct_new_source() 50 0.00527 0.005902 0.00621 0.18% Castro::swap_state_time_levels() 10 0.002686 0.003827 0.004501 0.13% Gravity::get_new_grav_vector() 11 0.002682 0.003422 0.004098 0.12% main() 1 0.002933 0.003407 0.003882 0.11% Amr::coarseTimeStep() 10 0.001554 0.002432 0.003359 0.10% Castro::buildMetrics() 1 0.001474 0.001657 0.002341 0.07% Gravity::get_old_grav_vector() 10 0.001459 0.001943 0.0023 0.07% Castro::finalize_do_advance() 10 0.0003593 0.0009659 0.001431 0.04% Amr::InitAmr() 1 0.000365 0.0004684 0.001105 0.03% AmrLevel::FillPatch() 41 0.0006925 0.0008896 0.0009907 0.03% DistributionMapping::LeastUsedCPUs() 1 5.162e-05 0.0007763 0.0008926 0.03% Amr::timeStep() 10 0.0001469 0.0002179 0.0004745 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002794 0.0002906 0.0003001 0.01% Castro::do_advance_ctu() 10 0.0001454 0.0001708 0.0002023 0.01% Castro::clean_state() 62 0.0001468 0.00016 0.0001925 0.01% Castro::finalize_advance() 10 9.545e-05 0.0001155 0.0001274 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001083 0.000113 0.0001181 0.00% Castro::Castro() 1 7.341e-05 9.449e-05 0.000115 0.00% StateDataPhysBCFunct::() 41 8.645e-05 9.95e-05 0.0001141 0.00% Castro::enforce_consistent_e() 1 7.47e-05 9.248e-05 0.0001099 0.00% Castro::do_old_sources() 10 6.855e-05 8.928e-05 0.0001003 0.00% Castro::construct_old_source() 50 5.117e-05 7.674e-05 9.825e-05 0.00% FillPatchSingleLevel 41 7.265e-05 8.117e-05 9.066e-05 0.00% FabArray::ParallelCopy() 41 7.831e-05 8.267e-05 8.734e-05 0.00% FabArrayBase::getCPC() 41 5.457e-05 6.251e-05 8.165e-05 0.00% Castro::do_new_sources() 10 5.288e-05 6.552e-05 8.045e-05 0.00% Amr::defBaseLevel() 1 4.133e-05 5.283e-05 7.971e-05 0.00% Amr::FinalizeInit() 1 3.839e-06 1.363e-05 7.695e-05 0.00% Amr::writeSmallPlotFile() 1 4.33e-05 5.397e-05 6.768e-05 0.00% Castro::advance() 10 4.031e-05 4.419e-05 5.2e-05 0.00% Castro::subcycle_advance_ctu() 10 3.295e-05 4.364e-05 5.18e-05 0.00% Castro::apply_source_to_state() 20 3.709e-05 4.402e-05 4.922e-05 0.00% Castro::construct_old_gravity() 10 3.238e-05 3.815e-05 4.282e-05 0.00% Castro::construct_new_gravity() 10 3.025e-05 3.549e-05 4.255e-05 0.00% FabArrayBase::CPC::define() 2 2.387e-05 2.955e-05 3.7e-05 0.00% Castro::enforce_speed_limit() 62 2.346e-05 3.183e-05 3.58e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.19e-06 1.387e-05 3.148e-05 0.00% Castro::expand_state() 10 1.917e-05 2.244e-05 2.599e-05 0.00% Castro::check_for_nan() 20 1.861e-05 2.075e-05 2.217e-05 0.00% Gravity::set_mass_offset() 10 1.185e-05 1.515e-05 2.031e-05 0.00% Amr::initSubcycle() 1 1.015e-05 1.195e-05 1.839e-05 0.00% Castro::post_timestep() 10 1.394e-05 1.497e-05 1.63e-05 0.00% Castro::post_init() 1 9.309e-06 1.019e-05 1.186e-05 0.00% Castro::computeNewDt() 9 8.494e-06 1.021e-05 1.143e-05 0.00% Castro::FluxRegCrseInit 10 6.095e-06 8.229e-06 1.118e-05 0.00% Gravity::swapTimeLevels() 10 6.426e-06 9.648e-06 1.114e-05 0.00% Amr::InitializeInit() 1 2.881e-06 4.57e-06 9.848e-06 0.00% Castro::retry_advance_ctu() 10 6.876e-06 7.569e-06 8.974e-06 0.00% Castro::create_source_corrector() 10 5.874e-06 7.407e-06 8.539e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.045e-06 5.192e-06 7.683e-06 0.00% Castro::computeInitialDt() 2 3.284e-06 3.794e-06 4.595e-06 0.00% Castro::post_regrid() 1 2.218e-06 3.486e-06 4.515e-06 0.00% Amr::init() 1 2.002e-06 2.326e-06 3.042e-06 0.00% Amr::initialInit() 1 1.368e-06 1.768e-06 2.475e-06 0.00% Castro::FluxRegFineAdd() 10 1.743e-06 2.002e-06 2.355e-06 0.00% DistributionMapping::Distribute() 1 9.85e-07 1.364e-06 1.721e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.492 3.493 3.493 100.00% Amr::coarseTimeStep() 10 3.27 3.27 3.27 93.61% Amr::timeStep() 10 3.256 3.257 3.258 93.27% Castro::advance() 10 3.241 3.241 3.242 92.81% Castro::subcycle_advance_ctu() 10 3.164 3.17 3.181 91.06% Castro::do_advance_ctu() 10 3.164 3.17 3.181 91.06% Castro::construct_ctu_hydro_source() 10 2.448 2.451 2.454 70.26% Gravity::make_radial_gravity() 21 0.3094 0.3176 0.3308 9.47% Gravity::get_new_grav_vector() 11 0.209 0.2101 0.2116 6.06% Amr::init() 1 0.2104 0.2112 0.2113 6.05% AmrLevel::FillPatch() 41 0.179 0.1913 0.2044 5.85% Castro::construct_old_gravity() 10 0.1834 0.1885 0.1993 5.71% Gravity::get_old_grav_vector() 10 0.1827 0.1878 0.1987 5.69% Amr::initialInit() 1 0.1945 0.1949 0.1955 5.60% Castro::construct_new_gravity() 10 0.1833 0.1845 0.1857 5.32% FillPatchIterator::Initialize 41 0.1497 0.1612 0.1801 5.16% Castro::initialize_do_advance() 10 0.1563 0.1609 0.1657 4.74% Amr::InitializeInit() 1 0.06866 0.1143 0.1653 4.73% Amr::defBaseLevel() 1 0.06865 0.1143 0.1653 4.73% Castro::initData() 1 0.0524 0.09636 0.147 4.21% FillPatchIterator::FillFromLevel0() 41 0.1075 0.1186 0.1441 4.12% FillPatchSingleLevel 41 0.1074 0.1185 0.144 4.12% check_for_negative_density() 10 0.03515 0.08792 0.1323 3.79% Amr::FinalizeInit() 1 0.0302 0.08065 0.1259 3.60% Castro::estTimeStep() 21 0.02349 0.08011 0.119 3.41% Castro::clean_state() 62 0.1099 0.1157 0.1187 3.40% Castro::expand_state() 10 0.1022 0.109 0.1153 3.30% FabArray::ParallelCopy() 41 0.07494 0.08761 0.1144 3.27% Castro::computeInitialDt() 2 0.002655 0.05359 0.09931 2.84% Castro::do_old_sources() 10 0.08504 0.08921 0.092 2.63% amrex::Copy() 193 0.06131 0.07372 0.08281 2.37% FabArray::ParallelCopy_finish() 41 0.03635 0.04952 0.08117 2.32% Castro::initialize_advance() 10 0.05645 0.06759 0.07378 2.11% FabArray::setVal() 143 0.05876 0.0653 0.07353 2.10% Castro::computeTemp() 63 0.06342 0.0676 0.07004 2.00% Castro::do_new_sources() 10 0.05811 0.06278 0.06835 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04536 0.04766 0.04956 1.42% Castro::reset_internal_energy(Fab) 1008 0.04507 0.04737 0.04927 1.41% Castro::normalize_species() 62 0.04143 0.04297 0.04511 1.29% FabArray::ParallelCopy_nowait() 41 0.03315 0.03801 0.03924 1.12% StateDataPhysBCFunct::() 41 0.02872 0.0308 0.03333 0.95% StateData::FillBoundary(geom) 41 0.02863 0.0307 0.03323 0.95% Castro::construct_new_source() 50 0.02691 0.02976 0.03219 0.92% Gravity::interpolate_monopole_grav() 21 0.02789 0.02916 0.0299 0.86% Castro::post_init() 1 0.02618 0.0267 0.02713 0.78% Castro::construct_new_gravity_source() 10 0.02164 0.02386 0.02615 0.75% Amr::writePlotFile() 2 0.02326 0.02383 0.02438 0.70% Castro::finalize_do_advance() 10 0.0117 0.01843 0.02282 0.65% Castro::post_timestep() 10 0.01508 0.01581 0.01668 0.48% Castro::Castro() 1 0.01002 0.01106 0.01413 0.40% FabArray::setDomainBndry() 41 0.008802 0.01149 0.01355 0.39% Castro::apply_source_to_state() 20 0.01016 0.01169 0.01262 0.36% FabArray::Saxpy() 20 0.01013 0.01165 0.01257 0.36% VisMF::Write(FabArray) 2 0.00851 0.009402 0.01239 0.35% Castro::check_for_nan() 20 0.009207 0.009936 0.01091 0.31% MultiFab::contains_nan() 20 0.009186 0.009915 0.01089 0.31% Castro::initMFs() 1 0.00647 0.007341 0.01036 0.30% Castro::construct_old_source() 50 0.006511 0.008803 0.009305 0.27% Castro::construct_old_gravity_source() 10 0.00646 0.008726 0.009227 0.26% Castro::computeNewDt() 9 0.009057 0.009069 0.00908 0.26% AmrLevel::AmrLevel(dm) 1 0.005289 0.00601 0.008412 0.24% StateData::define() 4 0.00528 0.005996 0.00838 0.24% Castro::enforce_min_density() 62 0.005666 0.005969 0.006342 0.18% Castro::swap_state_time_levels() 10 0.002686 0.003827 0.004501 0.13% Castro::finalize_advance() 10 0.002873 0.003355 0.003948 0.11% Castro::buildMetrics() 1 0.00159 0.001798 0.002533 0.07% Castro::post_regrid() 1 0.00135 0.001635 0.001982 0.06% Amr::InitAmr() 1 0.000376 0.0004804 0.001123 0.03% DistributionMapping::SFCProcessorMapDoIt() 1 6.011e-05 0.0007828 0.0008979 0.03% DistributionMapping::LeastUsedCPUs() 1 5.162e-05 0.0007763 0.0008926 0.03% FabArrayBase::getCPC() 41 8.402e-05 9.206e-05 0.0001107 0.00% Castro::enforce_consistent_e() 1 7.47e-05 9.248e-05 0.0001099 0.00% Amr::writeSmallPlotFile() 1 4.33e-05 5.397e-05 6.768e-05 0.00% FabArrayBase::CPC::define() 2 2.387e-05 2.955e-05 3.7e-05 0.00% Castro::enforce_speed_limit() 62 2.346e-05 3.183e-05 3.58e-05 0.00% Gravity::set_mass_offset() 10 1.185e-05 1.515e-05 2.031e-05 0.00% Amr::initSubcycle() 1 1.015e-05 1.195e-05 1.839e-05 0.00% Castro::FluxRegCrseInit 10 6.095e-06 8.229e-06 1.118e-05 0.00% Gravity::swapTimeLevels() 10 6.426e-06 9.648e-06 1.114e-05 0.00% Castro::retry_advance_ctu() 10 6.876e-06 7.569e-06 8.974e-06 0.00% Castro::create_source_corrector() 10 5.874e-06 7.407e-06 8.539e-06 0.00% Castro::FluxRegFineAdd() 10 1.743e-06 2.002e-06 2.355e-06 0.00% DistributionMapping::Distribute() 1 9.85e-07 1.364e-06 1.721e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 40 B 50 B 68 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-6-g771c439170bf) finalized