Initializing AMReX (24.04-8-g2cd72a3bbaeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-8-g2cd72a3bbaeb) initialized Starting run at 05:25:28 UTC on 2024-04-08. Successfully read inputs file ... Castro git describe: 24.04-11-g2407e8176 AMReX git describe: 24.04-8-g2cd72a3bb Microphysics git describe: 24.04-4-ge5fecb7a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014617646 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352686662 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33479864 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329279572 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330457731 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352886486 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341253803 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.318285627 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.32154209 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31530698 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318463188 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008823487 seconds Ending run at 05:25:32 UTC on 2024-04-08. Run time = 3.530594335 Run time without initialization = 3.328724078 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.529 ... 3.53 ... 3.531 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2793 2.3447 2.3991 67.95% Gravity::make_radial_gravity() 21 0.2998 0.3108 0.3377 9.56% check_for_negative_density() 10 0.01888 0.07999 0.1475 4.18% Castro::initData() 1 0.05691 0.09652 0.135 3.82% FabArray::ParallelCopy_finish() 41 0.04137 0.06336 0.1109 3.14% Castro::estTimeStep() 21 0.03254 0.07111 0.1088 3.08% amrex::Copy() 193 0.05735 0.07933 0.09006 2.55% FabArray::setVal() 143 0.04863 0.06643 0.07562 2.14% Castro::normalize_species() 62 0.04383 0.04916 0.05375 1.52% Castro::reset_internal_energy(Fab) 1008 0.04599 0.04808 0.04969 1.41% FabArray::ParallelCopy_nowait() 41 0.03356 0.0405 0.04721 1.34% StateData::FillBoundary(geom) 41 0.0305 0.03214 0.0359 1.02% FillPatchIterator::Initialize 41 0.02685 0.03223 0.03532 1.00% Gravity::interpolate_monopole_grav() 21 0.0279 0.02919 0.02999 0.85% Castro::construct_new_gravity_source() 10 0.02159 0.02374 0.02537 0.72% Castro::computeTemp() 63 0.01989 0.0209 0.02222 0.63% Castro::initialize_do_advance() 10 0.01047 0.01561 0.0179 0.51% FabArray::setDomainBndry() 41 0.008247 0.01203 0.01557 0.44% FabArray::Saxpy() 20 0.009025 0.01213 0.01431 0.41% Amr::writePlotFile() 2 0.008804 0.01176 0.0141 0.40% MultiFab::contains_nan() 20 0.01048 0.01204 0.01355 0.38% VisMF::Write(FabArray) 2 0.008445 0.009139 0.01188 0.34% Castro::initialize_advance() 10 0.004812 0.01037 0.01142 0.32% Castro::construct_old_gravity_source() 10 0.005552 0.008838 0.01037 0.29% Castro::enforce_min_density() 62 0.007048 0.00747 0.007865 0.22% Castro::initMFs() 1 0.006352 0.007139 0.007428 0.21% Castro::construct_new_source() 50 0.005575 0.006661 0.007036 0.20% StateData::define() 4 0.005414 0.005958 0.00612 0.17% Amr::coarseTimeStep() 10 0.00208 0.003405 0.005087 0.14% main() 1 0.002768 0.003806 0.004306 0.12% Castro::swap_state_time_levels() 10 0.002799 0.003868 0.004231 0.12% Gravity::get_new_grav_vector() 11 0.002505 0.003148 0.003962 0.11% Gravity::get_old_grav_vector() 10 0.001442 0.002087 0.00262 0.07% Castro::buildMetrics() 1 0.001529 0.001708 0.00179 0.05% AmrLevel::FillPatch() 41 0.000626 0.0008909 0.001117 0.03% Castro::finalize_do_advance() 10 0.000351 0.0009304 0.001103 0.03% Amr::InitAmr() 1 0.0003488 0.000411 0.0005722 0.02% Amr::timeStep() 10 0.0001758 0.0002418 0.0005104 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000292 0.0003008 0.0003196 0.01% DistributionMapping::LeastUsedCPUs() 1 2.469e-05 0.0001796 0.0002506 0.01% Castro::do_advance_ctu() 10 0.0001407 0.0001847 0.0002307 0.01% Castro::clean_state() 62 0.0001517 0.0001671 0.0001772 0.01% StateDataPhysBCFunct::() 41 9.112e-05 0.0001192 0.0001471 0.00% Castro::finalize_advance() 10 9.662e-05 0.0001205 0.0001381 0.00% Castro::do_old_sources() 10 6.876e-05 9.676e-05 0.0001294 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001039 0.000117 0.0001268 0.00% Castro::Castro() 1 7.683e-05 0.0001034 0.0001182 0.00% Castro::enforce_consistent_e() 1 9.927e-05 0.0001034 0.0001123 0.00% FabArray::ParallelCopy() 41 7.689e-05 9.582e-05 0.0001048 0.00% Castro::construct_old_source() 50 5.405e-05 8.153e-05 0.0001033 0.00% FillPatchSingleLevel 41 8.001e-05 8.511e-05 9.199e-05 0.00% Amr::FinalizeInit() 1 4.035e-06 1.56e-05 9.194e-05 0.00% Castro::do_new_sources() 10 5.427e-05 6.624e-05 7.798e-05 0.00% FabArrayBase::getCPC() 41 5.231e-05 5.981e-05 6.415e-05 0.00% Amr::writeSmallPlotFile() 1 3.282e-05 5.083e-05 5.997e-05 0.00% Castro::subcycle_advance_ctu() 10 3.509e-05 4.698e-05 5.582e-05 0.00% Amr::defBaseLevel() 1 3.933e-05 4.519e-05 5.468e-05 0.00% Castro::construct_old_gravity() 10 3.194e-05 4.05e-05 5.245e-05 0.00% Castro::apply_source_to_state() 20 3.278e-05 4.393e-05 5.225e-05 0.00% Castro::advance() 10 3.929e-05 4.362e-05 4.878e-05 0.00% Castro::construct_new_gravity() 10 3.034e-05 3.757e-05 4.378e-05 0.00% Castro::enforce_speed_limit() 62 2.372e-05 3.099e-05 3.325e-05 0.00% FabArrayBase::CPC::define() 2 2.541e-05 2.809e-05 3.082e-05 0.00% Castro::check_for_nan() 20 1.997e-05 2.569e-05 2.784e-05 0.00% Castro::expand_state() 10 1.608e-05 2.333e-05 2.715e-05 0.00% Amr::initSubcycle() 1 1.1e-05 1.306e-05 2.365e-05 0.00% Gravity::set_mass_offset() 10 1.291e-05 1.683e-05 1.975e-05 0.00% Castro::post_timestep() 10 1.414e-05 1.507e-05 1.787e-05 0.00% Gravity::swapTimeLevels() 10 5.751e-06 1.083e-05 1.443e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.782e-06 1.105e-05 1.327e-05 0.00% Castro::computeNewDt() 9 7.796e-06 9.962e-06 1.194e-05 0.00% Castro::FluxRegCrseInit 10 6.907e-06 9.02e-06 1.133e-05 0.00% Castro::post_init() 1 7.74e-06 8.641e-06 1.101e-05 0.00% Castro::create_source_corrector() 10 7.487e-06 7.992e-06 9.912e-06 0.00% Castro::retry_advance_ctu() 10 7.169e-06 7.977e-06 9.327e-06 0.00% Amr::initialInit() 1 1.219e-06 2.413e-06 8.309e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.084e-06 5.405e-06 8.138e-06 0.00% Amr::InitializeInit() 1 3.003e-06 3.691e-06 6.366e-06 0.00% Castro::computeInitialDt() 2 3.029e-06 3.487e-06 4.203e-06 0.00% Castro::post_regrid() 1 2.143e-06 2.983e-06 3.807e-06 0.00% Amr::init() 1 1.756e-06 2.094e-06 2.778e-06 0.00% Castro::FluxRegFineAdd() 10 1.896e-06 2.315e-06 2.615e-06 0.00% DistributionMapping::Distribute() 1 1.163e-06 1.282e-06 1.764e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.529 3.53 3.531 100.00% Amr::coarseTimeStep() 10 3.316 3.316 3.316 93.91% Amr::timeStep() 10 3.3 3.302 3.303 93.55% Castro::advance() 10 3.283 3.284 3.285 93.03% Castro::subcycle_advance_ctu() 10 3.204 3.212 3.23 91.49% Castro::do_advance_ctu() 10 3.204 3.212 3.23 91.49% Castro::construct_ctu_hydro_source() 10 2.441 2.447 2.451 69.43% Gravity::make_radial_gravity() 21 0.317 0.3261 0.3491 9.89% AmrLevel::FillPatch() 41 0.2031 0.2147 0.2353 6.67% Castro::construct_old_gravity() 10 0.193 0.2005 0.2199 6.23% Gravity::get_old_grav_vector() 10 0.1922 0.1997 0.2194 6.21% FillPatchIterator::Initialize 41 0.1649 0.1808 0.2128 6.03% Gravity::get_new_grav_vector() 11 0.2105 0.2114 0.2125 6.02% Amr::init() 1 0.2011 0.2013 0.2014 5.70% Castro::construct_new_gravity() 10 0.1851 0.1861 0.187 5.30% Amr::initialInit() 1 0.186 0.1864 0.1866 5.29% Castro::initialize_do_advance() 10 0.1684 0.1746 0.1806 5.12% FillPatchIterator::FillFromLevel0() 41 0.1171 0.1365 0.1754 4.97% FillPatchSingleLevel 41 0.117 0.1364 0.1753 4.97% Amr::InitializeInit() 1 0.07968 0.1187 0.1573 4.45% Amr::defBaseLevel() 1 0.07968 0.1187 0.1573 4.45% check_for_negative_density() 10 0.01888 0.07999 0.1475 4.18% FabArray::ParallelCopy() 41 0.08595 0.104 0.1447 4.10% Castro::initData() 1 0.06146 0.1009 0.1388 3.93% Castro::clean_state() 62 0.1176 0.1251 0.1316 3.73% Castro::expand_state() 10 0.1133 0.1199 0.1273 3.61% FabArray::ParallelCopy_finish() 41 0.04137 0.06336 0.1109 3.14% Castro::estTimeStep() 21 0.03254 0.07111 0.1088 3.08% Amr::FinalizeInit() 1 0.0287 0.0677 0.107 3.03% Castro::do_old_sources() 10 0.09707 0.1016 0.1052 2.98% amrex::Copy() 193 0.05735 0.07933 0.09006 2.55% Castro::computeInitialDt() 2 0.00225 0.04081 0.07984 2.26% Castro::initialize_advance() 10 0.0502 0.06938 0.07662 2.17% FabArray::setVal() 143 0.04863 0.06643 0.07562 2.14% Castro::computeTemp() 63 0.0666 0.06928 0.07174 2.03% Castro::do_new_sources() 10 0.05607 0.06425 0.06777 1.92% Castro::normalize_species() 62 0.04383 0.04916 0.05375 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04628 0.04838 0.04999 1.42% Castro::reset_internal_energy(Fab) 1008 0.04599 0.04808 0.04969 1.41% FabArray::ParallelCopy_nowait() 41 0.03364 0.04059 0.04729 1.34% StateDataPhysBCFunct::() 41 0.03059 0.03226 0.03602 1.02% StateData::FillBoundary(geom) 41 0.0305 0.03214 0.0359 1.02% Castro::construct_new_source() 50 0.02716 0.0304 0.03209 0.91% Gravity::interpolate_monopole_grav() 21 0.0279 0.02919 0.02999 0.85% Castro::finalize_do_advance() 10 0.01661 0.0219 0.02993 0.85% Castro::post_init() 1 0.02594 0.0263 0.02664 0.75% Castro::construct_new_gravity_source() 10 0.02159 0.02374 0.02537 0.72% Amr::writePlotFile() 2 0.02359 0.02384 0.02427 0.69% Castro::post_timestep() 10 0.01633 0.01716 0.01834 0.52% FabArray::setDomainBndry() 41 0.008247 0.01203 0.01557 0.44% Castro::apply_source_to_state() 20 0.009057 0.01217 0.01437 0.41% FabArray::Saxpy() 20 0.009025 0.01213 0.01431 0.41% Castro::check_for_nan() 20 0.0105 0.01207 0.01358 0.38% MultiFab::contains_nan() 20 0.01048 0.01204 0.01355 0.38% Castro::Castro() 1 0.0092 0.01156 0.01215 0.34% VisMF::Write(FabArray) 2 0.008445 0.009139 0.01188 0.34% Castro::construct_old_source() 50 0.005606 0.008919 0.01047 0.30% Castro::construct_old_gravity_source() 10 0.005552 0.008838 0.01037 0.29% Castro::computeNewDt() 9 0.009336 0.009348 0.00936 0.27% Castro::enforce_min_density() 62 0.007048 0.00747 0.007865 0.22% Castro::initMFs() 1 0.006352 0.007139 0.007428 0.21% AmrLevel::AmrLevel(dm) 1 0.005424 0.005969 0.00613 0.17% StateData::define() 4 0.005414 0.005958 0.00612 0.17% Castro::swap_state_time_levels() 10 0.002799 0.003868 0.004231 0.12% Castro::finalize_advance() 10 0.002891 0.003249 0.00345 0.10% Castro::post_regrid() 1 0.00134 0.001769 0.002146 0.06% Castro::buildMetrics() 1 0.001648 0.001839 0.001932 0.05% Amr::InitAmr() 1 0.0003598 0.000424 0.000584 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.001e-05 0.0001863 0.0002581 0.01% DistributionMapping::LeastUsedCPUs() 1 2.469e-05 0.0001796 0.0002506 0.01% Castro::enforce_consistent_e() 1 9.927e-05 0.0001034 0.0001123 0.00% FabArrayBase::getCPC() 41 7.991e-05 8.79e-05 9.428e-05 0.00% Amr::writeSmallPlotFile() 1 3.282e-05 5.083e-05 5.997e-05 0.00% Castro::enforce_speed_limit() 62 2.372e-05 3.099e-05 3.325e-05 0.00% FabArrayBase::CPC::define() 2 2.541e-05 2.809e-05 3.082e-05 0.00% Amr::initSubcycle() 1 1.1e-05 1.306e-05 2.365e-05 0.00% Gravity::set_mass_offset() 10 1.291e-05 1.683e-05 1.975e-05 0.00% Gravity::swapTimeLevels() 10 5.751e-06 1.083e-05 1.443e-05 0.00% Castro::FluxRegCrseInit 10 6.907e-06 9.02e-06 1.133e-05 0.00% Castro::create_source_corrector() 10 7.487e-06 7.992e-06 9.912e-06 0.00% Castro::retry_advance_ctu() 10 7.169e-06 7.977e-06 9.327e-06 0.00% Castro::FluxRegFineAdd() 10 1.896e-06 2.315e-06 2.615e-06 0.00% DistributionMapping::Distribute() 1 1.163e-06 1.282e-06 1.764e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 37 B 39 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-8-g2cd72a3bbaeb) finalized