Initializing AMReX (24.04-9-g2a3955a5f5aa)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-9-g2a3955a5f5aa) initialized Starting run at 05:38:23 UTC on 2024-04-09. Successfully read inputs file ... Castro git describe: 24.04-11-g2407e8176 AMReX git describe: 24.04-9-g2a3955a5f Microphysics git describe: 24.04-4-ge5fecb7a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014100706 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353670585 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344095532 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.321737418 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.358505299 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333288548 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.304728272 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.304710421 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.306336506 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.305220355 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.305899981 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007442785 seconds Ending run at 05:38:26 UTC on 2024-04-09. Run time = 3.460662747 Run time without initialization = 3.250484846 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.46 ... 3.46 ... 3.461 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2593 2.3215 2.3557 68.07% Gravity::make_radial_gravity() 21 0.2941 0.2976 0.3081 8.90% Castro::initData() 1 0.05565 0.09729 0.1443 4.17% check_for_negative_density() 10 0.03279 0.06928 0.1343 3.88% Castro::estTimeStep() 21 0.03522 0.07835 0.1161 3.35% amrex::Copy() 193 0.06114 0.07586 0.08174 2.36% FabArray::ParallelCopy_finish() 41 0.03865 0.05224 0.0798 2.31% FabArray::setVal() 143 0.05993 0.06699 0.07807 2.26% Castro::reset_internal_energy(Fab) 1008 0.04466 0.04673 0.04807 1.39% Castro::normalize_species() 62 0.04127 0.04226 0.04367 1.26% FabArray::ParallelCopy_nowait() 41 0.03327 0.03839 0.04019 1.16% FillPatchIterator::Initialize 41 0.02756 0.03112 0.03282 0.95% StateData::FillBoundary(geom) 41 0.02759 0.03018 0.0322 0.93% Gravity::interpolate_monopole_grav() 21 0.02823 0.02937 0.03081 0.89% Castro::construct_new_gravity_source() 10 0.02201 0.02408 0.02716 0.78% Castro::computeTemp() 63 0.01767 0.01929 0.0203 0.59% Castro::initialize_do_advance() 10 0.01305 0.01689 0.02014 0.58% FabArray::setDomainBndry() 41 0.008415 0.01097 0.01331 0.38% FabArray::Saxpy() 20 0.01034 0.01152 0.01222 0.35% Castro::initialize_advance() 10 0.005485 0.009805 0.01211 0.35% Amr::writePlotFile() 2 0.007539 0.01005 0.01207 0.35% MultiFab::contains_nan() 20 0.01027 0.01094 0.01161 0.34% VisMF::Write(FabArray) 2 0.008511 0.009204 0.01154 0.33% Castro::initMFs() 1 0.007337 0.009164 0.01115 0.32% Castro::construct_old_gravity_source() 10 0.006522 0.008864 0.009378 0.27% StateData::define() 4 0.006061 0.007519 0.00912 0.26% Castro::enforce_min_density() 62 0.005596 0.006021 0.006652 0.19% Castro::construct_new_source() 50 0.005342 0.005791 0.005914 0.17% Gravity::get_new_grav_vector() 11 0.003285 0.003655 0.005145 0.15% Castro::swap_state_time_levels() 10 0.002761 0.003831 0.0042 0.12% main() 1 0.003191 0.003773 0.004174 0.12% Amr::coarseTimeStep() 10 0.002029 0.002538 0.00299 0.09% Castro::buildMetrics() 1 0.001699 0.002146 0.002581 0.07% Gravity::get_old_grav_vector() 10 0.001643 0.001968 0.002409 0.07% Castro::finalize_do_advance() 10 0.0004354 0.0009627 0.001273 0.04% AmrLevel::FillPatch() 41 0.0007373 0.0008506 0.001023 0.03% Amr::InitAmr() 1 0.0003895 0.000599 0.0008798 0.03% DistributionMapping::LeastUsedCPUs() 1 2.834e-05 0.0003188 0.0005564 0.02% Amr::timeStep() 10 0.0001758 0.0002238 0.0004517 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002714 0.0002905 0.0003071 0.01% Castro::clean_state() 62 0.0001436 0.0001777 0.0002124 0.01% Castro::do_advance_ctu() 10 0.0001526 0.0001763 0.0001972 0.01% StateDataPhysBCFunct::() 41 9.995e-05 0.0001109 0.0001349 0.00% Castro::Castro() 1 7.433e-05 9.616e-05 0.0001346 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001149 0.0001318 0.00% Castro::finalize_advance() 10 0.0001095 0.0001169 0.0001214 0.00% Castro::construct_old_source() 50 6.637e-05 8.319e-05 0.0001161 0.00% Castro::do_old_sources() 10 8.087e-05 9.101e-05 0.0001122 0.00% Castro::enforce_consistent_e() 1 7.686e-05 8.894e-05 0.0001098 0.00% Amr::FinalizeInit() 1 3.215e-06 1.658e-05 0.0001043 0.00% FabArray::ParallelCopy() 41 7.789e-05 8.293e-05 9.413e-05 0.00% FillPatchSingleLevel 41 6.077e-05 7.405e-05 8.833e-05 0.00% Castro::do_new_sources() 10 5.332e-05 6.021e-05 7.059e-05 0.00% FabArrayBase::getCPC() 41 5.397e-05 6.071e-05 6.941e-05 0.00% Amr::defBaseLevel() 1 5.198e-05 5.91e-05 6.849e-05 0.00% Amr::writeSmallPlotFile() 1 3.428e-05 4.92e-05 5.793e-05 0.00% Castro::subcycle_advance_ctu() 10 4.222e-05 4.979e-05 5.781e-05 0.00% Castro::advance() 10 3.849e-05 4.759e-05 5.539e-05 0.00% Castro::apply_source_to_state() 20 4.197e-05 4.713e-05 5.327e-05 0.00% Castro::construct_old_gravity() 10 3.341e-05 3.879e-05 4.887e-05 0.00% Castro::construct_new_gravity() 10 2.825e-05 3.545e-05 4.481e-05 0.00% Castro::enforce_speed_limit() 62 2.718e-05 3.061e-05 3.469e-05 0.00% FabArrayBase::CPC::define() 2 2.611e-05 2.986e-05 3.232e-05 0.00% Amr::initSubcycle() 1 1.297e-05 1.873e-05 3.129e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.071e-05 1.759e-05 2.909e-05 0.00% Castro::expand_state() 10 2.226e-05 2.568e-05 2.788e-05 0.00% Castro::check_for_nan() 20 1.858e-05 1.987e-05 2.207e-05 0.00% Gravity::set_mass_offset() 10 1.226e-05 1.738e-05 2.082e-05 0.00% Castro::post_timestep() 10 1.291e-05 1.58e-05 1.746e-05 0.00% Gravity::swapTimeLevels() 10 8.929e-06 1.039e-05 1.198e-05 0.00% Castro::post_init() 1 8.605e-06 9.621e-06 1.181e-05 0.00% Castro::computeNewDt() 9 8.28e-06 1.007e-05 1.144e-05 0.00% Castro::create_source_corrector() 10 6.038e-06 7.956e-06 1.009e-05 0.00% Castro::retry_advance_ctu() 10 6.835e-06 8.321e-06 1.008e-05 0.00% Castro::FluxRegCrseInit 10 6.968e-06 8.006e-06 9.096e-06 0.00% Amr::InitializeInit() 1 3.296e-06 4.338e-06 8.257e-06 0.00% Amr::initialInit() 1 1.654e-06 2.839e-06 7.553e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.36e-06 5.516e-06 6.339e-06 0.00% Castro::post_regrid() 1 2.589e-06 3.277e-06 4.187e-06 0.00% Castro::computeInitialDt() 2 2.669e-06 3.342e-06 3.835e-06 0.00% Amr::init() 1 1.856e-06 2.41e-06 3.195e-06 0.00% Castro::FluxRegFineAdd() 10 1.781e-06 2.183e-06 2.685e-06 0.00% DistributionMapping::Distribute() 1 1.253e-06 1.608e-06 2.148e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.46 3.46 3.461 100.00% Amr::coarseTimeStep() 10 3.239 3.239 3.239 93.59% Amr::timeStep() 10 3.226 3.226 3.227 93.23% Castro::advance() 10 3.21 3.21 3.212 92.80% Castro::subcycle_advance_ctu() 10 3.13 3.138 3.143 90.82% Castro::do_advance_ctu() 10 3.13 3.138 3.143 90.82% Castro::construct_ctu_hydro_source() 10 2.41 2.413 2.418 69.87% Gravity::make_radial_gravity() 21 0.31 0.3133 0.3208 9.27% Gravity::get_new_grav_vector() 11 0.2073 0.2107 0.2126 6.14% Amr::init() 1 0.2091 0.2094 0.2096 6.06% AmrLevel::FillPatch() 41 0.1804 0.1946 0.2049 5.92% Amr::initialInit() 1 0.1947 0.195 0.1954 5.65% Castro::construct_old_gravity() 10 0.1817 0.1854 0.1936 5.59% Gravity::get_old_grav_vector() 10 0.181 0.1848 0.193 5.58% Castro::construct_new_gravity() 10 0.1852 0.1882 0.1897 5.48% FillPatchIterator::Initialize 41 0.1493 0.1634 0.1771 5.12% Amr::InitializeInit() 1 0.07656 0.1219 0.1689 4.88% Amr::defBaseLevel() 1 0.07656 0.1219 0.1689 4.88% Castro::initialize_do_advance() 10 0.1543 0.1632 0.1688 4.88% Castro::initData() 1 0.05906 0.1008 0.1479 4.27% FillPatchIterator::FillFromLevel0() 41 0.1093 0.1213 0.1412 4.08% FillPatchSingleLevel 41 0.1092 0.1212 0.141 4.08% check_for_negative_density() 10 0.03279 0.06928 0.1343 3.88% Amr::FinalizeInit() 1 0.02575 0.07316 0.1188 3.43% Castro::expand_state() 10 0.1005 0.1105 0.117 3.38% Castro::clean_state() 62 0.1119 0.1139 0.1161 3.36% Castro::estTimeStep() 21 0.03522 0.07835 0.1161 3.35% FabArray::ParallelCopy() 41 0.07815 0.09081 0.1133 3.27% Castro::computeInitialDt() 2 0.002209 0.04913 0.09466 2.74% Castro::do_old_sources() 10 0.08478 0.08921 0.09264 2.68% amrex::Copy() 193 0.06114 0.07586 0.08174 2.36% FabArray::ParallelCopy_finish() 41 0.03865 0.05224 0.0798 2.31% FabArray::setVal() 143 0.05993 0.06699 0.07807 2.26% Castro::initialize_advance() 10 0.0632 0.06865 0.07691 2.22% Castro::do_new_sources() 10 0.05797 0.06314 0.06978 2.02% Castro::computeTemp() 63 0.0628 0.06631 0.06812 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04494 0.04702 0.04836 1.40% Castro::reset_internal_energy(Fab) 1008 0.04466 0.04673 0.04807 1.39% Castro::normalize_species() 62 0.04127 0.04226 0.04367 1.26% FabArray::ParallelCopy_nowait() 41 0.03337 0.03848 0.04027 1.16% Castro::construct_new_source() 50 0.02763 0.02987 0.03304 0.95% StateDataPhysBCFunct::() 41 0.0277 0.03029 0.03231 0.93% StateData::FillBoundary(geom) 41 0.02759 0.03018 0.0322 0.93% Gravity::interpolate_monopole_grav() 21 0.02823 0.02937 0.03081 0.89% Castro::construct_new_gravity_source() 10 0.02201 0.02408 0.02716 0.78% Castro::finalize_do_advance() 10 0.01334 0.02092 0.0268 0.77% Castro::post_init() 1 0.02335 0.02365 0.02386 0.69% Amr::writePlotFile() 2 0.02174 0.02188 0.02236 0.65% Castro::post_timestep() 10 0.01454 0.0154 0.01581 0.46% Castro::Castro() 1 0.01082 0.01311 0.01563 0.45% FabArray::setDomainBndry() 41 0.008415 0.01097 0.01331 0.38% Castro::apply_source_to_state() 20 0.01039 0.01157 0.01226 0.35% FabArray::Saxpy() 20 0.01034 0.01152 0.01222 0.35% Castro::check_for_nan() 20 0.01029 0.01096 0.01163 0.34% MultiFab::contains_nan() 20 0.01027 0.01094 0.01161 0.34% VisMF::Write(FabArray) 2 0.008511 0.009204 0.01154 0.33% Castro::initMFs() 1 0.007337 0.009164 0.01115 0.32% Castro::construct_old_source() 50 0.006588 0.008947 0.009458 0.27% Castro::construct_old_gravity_source() 10 0.006522 0.008864 0.009378 0.27% Castro::computeNewDt() 9 0.009263 0.009276 0.009284 0.27% AmrLevel::AmrLevel(dm) 1 0.006077 0.007537 0.009149 0.26% StateData::define() 4 0.006061 0.007519 0.00912 0.26% Castro::enforce_min_density() 62 0.005596 0.006021 0.006652 0.19% Castro::finalize_advance() 10 0.002903 0.003518 0.004346 0.13% Castro::swap_state_time_levels() 10 0.002761 0.003831 0.0042 0.12% Castro::buildMetrics() 1 0.001828 0.002329 0.002812 0.08% Castro::post_regrid() 1 0.001333 0.001503 0.0016 0.05% Amr::InitAmr() 1 0.0004026 0.0006177 0.0008988 0.03% DistributionMapping::SFCProcessorMapDoIt() 1 3.465e-05 0.0003259 0.0005639 0.02% DistributionMapping::LeastUsedCPUs() 1 2.834e-05 0.0003188 0.0005564 0.02% Castro::enforce_consistent_e() 1 7.686e-05 8.894e-05 0.0001098 0.00% FabArrayBase::getCPC() 41 8.009e-05 9.057e-05 0.0001017 0.00% Amr::writeSmallPlotFile() 1 3.428e-05 4.92e-05 5.793e-05 0.00% Castro::enforce_speed_limit() 62 2.718e-05 3.061e-05 3.469e-05 0.00% FabArrayBase::CPC::define() 2 2.611e-05 2.986e-05 3.232e-05 0.00% Amr::initSubcycle() 1 1.297e-05 1.873e-05 3.129e-05 0.00% Gravity::set_mass_offset() 10 1.226e-05 1.738e-05 2.082e-05 0.00% Gravity::swapTimeLevels() 10 8.929e-06 1.039e-05 1.198e-05 0.00% Castro::create_source_corrector() 10 6.038e-06 7.956e-06 1.009e-05 0.00% Castro::retry_advance_ctu() 10 6.835e-06 8.321e-06 1.008e-05 0.00% Castro::FluxRegCrseInit 10 6.968e-06 8.006e-06 9.096e-06 0.00% Castro::FluxRegFineAdd() 10 1.781e-06 2.183e-06 2.685e-06 0.00% DistributionMapping::Distribute() 1 1.253e-06 1.608e-06 2.148e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 42 B 46 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-9-g2a3955a5f5aa) finalized