Initializing AMReX (24.04-14-g6c6247554f27)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-14-g6c6247554f27) initialized Starting run at 05:39:00 UTC on 2024-04-11. Successfully read inputs file ... Castro git describe: 24.04-13-g88d497647 AMReX git describe: 24.04-14-g6c6247554 Microphysics git describe: 24.04-7-gd4312a6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.080727484 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360012828 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34005802 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.320919265 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.358929409 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332191632 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.308122672 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309192997 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312830801 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312901013 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312747008 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007444927 seconds Ending run at 05:39:03 UTC on 2024-04-11. Run time = 3.545760522 Run time without initialization = 3.280348443 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.545 ... 3.545 ... 3.546 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3073 2.3395 2.3655 66.71% Gravity::make_radial_gravity() 21 0.2923 0.2997 0.3049 8.60% check_for_negative_density() 10 0.06821 0.0965 0.132 3.72% Castro::initData() 1 0.05704 0.09353 0.131 3.69% Castro::estTimeStep() 21 0.02817 0.07099 0.1102 3.11% amrex::Copy() 193 0.06446 0.07278 0.08165 2.30% Amr::writePlotFile() 2 0.07374 0.07694 0.07848 2.21% FabArray::setVal() 143 0.05812 0.066 0.07444 2.10% FabArray::ParallelCopy_finish() 41 0.0348 0.04938 0.06381 1.80% Castro::reset_internal_energy(Fab) 1008 0.04333 0.04606 0.04831 1.36% Castro::normalize_species() 62 0.04107 0.04181 0.04255 1.20% FabArray::ParallelCopy_nowait() 41 0.03379 0.03721 0.03871 1.09% FillPatchIterator::Initialize 41 0.02786 0.0311 0.03373 0.95% StateData::FillBoundary(geom) 41 0.02786 0.02971 0.03184 0.90% Gravity::interpolate_monopole_grav() 21 0.02796 0.02881 0.02974 0.84% Castro::construct_new_gravity_source() 10 0.02208 0.02342 0.02574 0.73% Castro::computeTemp() 63 0.01722 0.01907 0.01978 0.56% Castro::initialize_do_advance() 10 0.01326 0.01572 0.01853 0.52% FabArray::setDomainBndry() 41 0.008937 0.01124 0.01318 0.37% VisMF::Write(FabArray) 2 0.008471 0.009221 0.01231 0.35% FabArray::Saxpy() 20 0.01045 0.01107 0.01185 0.33% Castro::initialize_advance() 10 0.005717 0.00837 0.01158 0.33% MultiFab::contains_nan() 20 0.009818 0.01039 0.01105 0.31% Castro::initMFs() 1 0.007368 0.008208 0.01085 0.31% Castro::construct_old_gravity_source() 10 0.006815 0.008233 0.009115 0.26% StateData::define() 4 0.006221 0.006736 0.008235 0.23% Castro::enforce_min_density() 62 0.005458 0.005786 0.005982 0.17% Castro::construct_new_source() 50 0.005439 0.005631 0.005803 0.16% main() 1 0.003326 0.003653 0.004269 0.12% Gravity::get_new_grav_vector() 11 0.002951 0.00345 0.004237 0.12% Castro::swap_state_time_levels() 10 0.002887 0.0037 0.003978 0.11% Amr::coarseTimeStep() 10 0.001981 0.002513 0.003256 0.09% Castro::buildMetrics() 1 0.001682 0.001959 0.002402 0.07% Gravity::get_old_grav_vector() 10 0.001685 0.001921 0.002318 0.07% Castro::finalize_do_advance() 10 0.0004378 0.0008395 0.001349 0.04% AmrLevel::FillPatch() 41 0.0007252 0.0008432 0.001088 0.03% Amr::InitAmr() 1 0.0003845 0.00049 0.0008675 0.02% DistributionMapping::LeastUsedCPUs() 1 3.425e-05 0.00044 0.0005629 0.02% Amr::timeStep() 10 0.0001478 0.000219 0.0004797 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002677 0.0002793 0.0002986 0.01% Castro::do_advance_ctu() 10 0.0001504 0.0001691 0.0002033 0.01% Castro::clean_state() 62 0.0001381 0.0001593 0.0001937 0.01% Castro::Castro() 1 9.116e-05 0.0001058 0.0001217 0.00% FillPatchIterator::FillFromLevel0() 41 9.985e-05 0.0001068 0.0001173 0.00% StateDataPhysBCFunct::() 41 9.175e-05 0.0001073 0.0001155 0.00% Castro::enforce_consistent_e() 1 8.106e-05 8.774e-05 0.0001089 0.00% Castro::finalize_advance() 10 9.209e-05 0.0001037 0.0001088 0.00% Castro::do_old_sources() 10 7.331e-05 8.243e-05 9.418e-05 0.00% FabArray::ParallelCopy() 41 7.432e-05 8.187e-05 8.897e-05 0.00% Castro::construct_old_source() 50 5.614e-05 6.975e-05 8.139e-05 0.00% Amr::FinalizeInit() 1 3.496e-06 1.397e-05 8.099e-05 0.00% FillPatchSingleLevel 41 6.045e-05 6.835e-05 7.752e-05 0.00% Amr::defBaseLevel() 1 4.381e-05 5.716e-05 7.363e-05 0.00% Castro::do_new_sources() 10 5.2e-05 5.802e-05 6.436e-05 0.00% FabArrayBase::getCPC() 41 5.175e-05 5.777e-05 6.295e-05 0.00% Amr::writeSmallPlotFile() 1 3.269e-05 4.864e-05 5.708e-05 0.00% Castro::construct_old_gravity() 10 3.012e-05 3.664e-05 5.581e-05 0.00% Castro::advance() 10 3.894e-05 4.336e-05 4.707e-05 0.00% Castro::subcycle_advance_ctu() 10 3.779e-05 4.136e-05 4.524e-05 0.00% Castro::construct_new_gravity() 10 2.9e-05 3.56e-05 4.494e-05 0.00% Castro::apply_source_to_state() 20 3.43e-05 3.81e-05 4.297e-05 0.00% Castro::enforce_speed_limit() 62 2.49e-05 2.844e-05 4.047e-05 0.00% Castro::expand_state() 10 1.783e-05 2.369e-05 3.504e-05 0.00% FabArrayBase::CPC::define() 2 2.2e-05 2.476e-05 2.804e-05 0.00% Castro::check_for_nan() 20 2.013e-05 2.362e-05 2.727e-05 0.00% Amr::initSubcycle() 1 1.167e-05 1.447e-05 2.293e-05 0.00% AmrLevel::AmrLevel(dm) 1 1e-05 1.38e-05 2.275e-05 0.00% Castro::post_timestep() 10 1.303e-05 1.581e-05 1.901e-05 0.00% Gravity::set_mass_offset() 10 1.073e-05 1.462e-05 1.804e-05 0.00% Castro::post_init() 1 9.463e-06 1.242e-05 1.706e-05 0.00% Castro::create_source_corrector() 10 7.664e-06 9.67e-06 1.681e-05 0.00% Amr::InitializeInit() 1 2.847e-06 5.251e-06 1.578e-05 0.00% Gravity::swapTimeLevels() 10 7.855e-06 1.038e-05 1.334e-05 0.00% Castro::computeNewDt() 9 7.485e-06 9.229e-06 1.083e-05 0.00% Castro::retry_advance_ctu() 10 6.057e-06 7.754e-06 8.828e-06 0.00% Castro::FluxRegCrseInit 10 6.618e-06 7.116e-06 8.752e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.212e-06 5.667e-06 8.509e-06 0.00% Castro::post_regrid() 1 2.741e-06 3.354e-06 4.337e-06 0.00% Castro::computeInitialDt() 2 2.977e-06 3.847e-06 4.308e-06 0.00% Amr::init() 1 1.831e-06 2.291e-06 2.87e-06 0.00% Amr::initialInit() 1 1.3e-06 1.919e-06 2.551e-06 0.00% Castro::FluxRegFineAdd() 10 1.554e-06 1.96e-06 2.227e-06 0.00% DistributionMapping::Distribute() 1 1.132e-06 1.404e-06 1.841e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.545 3.545 3.546 100.00% Amr::coarseTimeStep() 10 3.269 3.269 3.269 92.19% Amr::timeStep() 10 3.255 3.256 3.256 91.83% Castro::advance() 10 3.24 3.24 3.241 91.40% Castro::subcycle_advance_ctu() 10 3.165 3.171 3.175 89.55% Castro::do_advance_ctu() 10 3.165 3.171 3.175 89.55% Castro::construct_ctu_hydro_source() 10 2.455 2.457 2.46 69.38% Gravity::make_radial_gravity() 21 0.3086 0.3153 0.3204 9.04% Amr::init() 1 0.2643 0.2647 0.2649 7.47% Gravity::get_new_grav_vector() 11 0.2069 0.2097 0.2111 5.95% AmrLevel::FillPatch() 41 0.1792 0.1889 0.1961 5.53% Castro::construct_old_gravity() 10 0.1832 0.1867 0.1917 5.41% Gravity::get_old_grav_vector() 10 0.1826 0.1861 0.1911 5.39% Castro::construct_new_gravity() 10 0.1849 0.1874 0.1886 5.32% Amr::initialInit() 1 0.1833 0.1837 0.1839 5.19% FillPatchIterator::Initialize 41 0.1487 0.1591 0.167 4.71% Castro::initialize_do_advance() 10 0.1496 0.1571 0.1641 4.63% Amr::InitializeInit() 1 0.08021 0.1171 0.1574 4.44% Amr::defBaseLevel() 1 0.08021 0.1171 0.1574 4.44% Castro::initData() 1 0.06139 0.09734 0.1344 3.79% check_for_negative_density() 10 0.06821 0.0965 0.132 3.72% FillPatchIterator::FillFromLevel0() 41 0.105 0.1167 0.1294 3.65% FillPatchSingleLevel 41 0.1049 0.1166 0.1293 3.65% Castro::clean_state() 62 0.1072 0.1123 0.116 3.27% Castro::expand_state() 10 0.0987 0.1062 0.1128 3.18% Castro::estTimeStep() 21 0.02817 0.07099 0.1102 3.11% Amr::FinalizeInit() 1 0.02609 0.06651 0.1036 2.92% FabArray::ParallelCopy() 41 0.07292 0.08675 0.09952 2.81% Castro::do_old_sources() 10 0.08538 0.08731 0.09009 2.54% Amr::writePlotFile() 2 0.08845 0.08863 0.08906 2.51% amrex::Copy() 193 0.06446 0.07278 0.08165 2.30% Castro::computeInitialDt() 2 0.002451 0.04295 0.07999 2.26% FabArray::setVal() 143 0.05812 0.066 0.07444 2.10% Castro::initialize_advance() 10 0.06134 0.0661 0.07193 2.03% Castro::do_new_sources() 10 0.05658 0.06127 0.0684 1.93% Castro::computeTemp() 63 0.06082 0.06541 0.06815 1.92% FabArray::ParallelCopy_finish() 41 0.0348 0.04938 0.06381 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04361 0.04633 0.04861 1.37% Castro::reset_internal_energy(Fab) 1008 0.04333 0.04606 0.04831 1.36% Castro::normalize_species() 62 0.04107 0.04181 0.04255 1.20% FabArray::ParallelCopy_nowait() 41 0.03388 0.03729 0.03879 1.09% StateDataPhysBCFunct::() 41 0.02797 0.02982 0.03195 0.90% StateData::FillBoundary(geom) 41 0.02786 0.02971 0.03184 0.90% Castro::construct_new_source() 50 0.02764 0.02905 0.03152 0.89% Gravity::interpolate_monopole_grav() 21 0.02796 0.02881 0.02974 0.84% Castro::construct_new_gravity_source() 10 0.02208 0.02342 0.02574 0.73% Castro::finalize_do_advance() 10 0.01162 0.01975 0.02556 0.72% Castro::post_init() 1 0.02314 0.02338 0.02354 0.66% Castro::post_timestep() 10 0.01492 0.01545 0.01569 0.44% Castro::Castro() 1 0.0116 0.01255 0.01488 0.42% FabArray::setDomainBndry() 41 0.008937 0.01124 0.01318 0.37% VisMF::Write(FabArray) 2 0.008471 0.009221 0.01231 0.35% Castro::apply_source_to_state() 20 0.01049 0.0111 0.01189 0.34% FabArray::Saxpy() 20 0.01045 0.01107 0.01185 0.33% Castro::check_for_nan() 20 0.009842 0.01041 0.01108 0.31% MultiFab::contains_nan() 20 0.009818 0.01039 0.01105 0.31% Castro::initMFs() 1 0.007368 0.008208 0.01085 0.31% Castro::construct_old_source() 50 0.006876 0.008303 0.009189 0.26% Castro::computeNewDt() 9 0.009129 0.009143 0.009154 0.26% Castro::construct_old_gravity_source() 10 0.006815 0.008233 0.009115 0.26% AmrLevel::AmrLevel(dm) 1 0.006234 0.00675 0.008253 0.23% StateData::define() 4 0.006221 0.006736 0.008235 0.23% Castro::enforce_min_density() 62 0.005458 0.005786 0.005982 0.17% Castro::finalize_advance() 10 0.002797 0.003267 0.004039 0.11% Castro::swap_state_time_levels() 10 0.002887 0.0037 0.003978 0.11% Castro::buildMetrics() 1 0.001823 0.002115 0.002615 0.07% Castro::post_regrid() 1 0.001323 0.001499 0.001614 0.05% Amr::InitAmr() 1 0.0003972 0.0005045 0.0008878 0.03% DistributionMapping::SFCProcessorMapDoIt() 1 4.058e-05 0.0004471 0.0005693 0.02% DistributionMapping::LeastUsedCPUs() 1 3.425e-05 0.00044 0.0005629 0.02% Castro::enforce_consistent_e() 1 8.106e-05 8.774e-05 0.0001089 0.00% FabArrayBase::getCPC() 41 7.425e-05 8.253e-05 8.89e-05 0.00% Amr::writeSmallPlotFile() 1 3.269e-05 4.864e-05 5.708e-05 0.00% Castro::enforce_speed_limit() 62 2.49e-05 2.844e-05 4.047e-05 0.00% FabArrayBase::CPC::define() 2 2.2e-05 2.476e-05 2.804e-05 0.00% Amr::initSubcycle() 1 1.167e-05 1.447e-05 2.293e-05 0.00% Gravity::set_mass_offset() 10 1.073e-05 1.462e-05 1.804e-05 0.00% Castro::create_source_corrector() 10 7.664e-06 9.67e-06 1.681e-05 0.00% Gravity::swapTimeLevels() 10 7.855e-06 1.038e-05 1.334e-05 0.00% Castro::retry_advance_ctu() 10 6.057e-06 7.754e-06 8.828e-06 0.00% Castro::FluxRegCrseInit 10 6.618e-06 7.116e-06 8.752e-06 0.00% Castro::FluxRegFineAdd() 10 1.554e-06 1.96e-06 2.227e-06 0.00% DistributionMapping::Distribute() 1 1.132e-06 1.404e-06 1.841e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 43 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-14-g6c6247554f27) finalized