Initializing AMReX (24.04-15-g7813bb7d6bc6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.04-15-g7813bb7d6bc6) initialized Starting run at 05:22:36 UTC on 2024-04-12. Successfully read inputs file ... Castro git describe: 24.04-14-g3d76cd5a0 AMReX git describe: 24.04-15-g7813bb7d6 Microphysics git describe: 24.04-7-gd4312a6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014813784 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359216236 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353813423 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331229502 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373960279 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333097769 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.30794958 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309384851 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310290735 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310272387 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309961759 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008030838 seconds Ending run at 05:22:40 UTC on 2024-04-12. Run time = 3.526120867 Run time without initialization = 3.312098373 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.526 ... 3.526 ... 3.526 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2921 2.3510 2.4221 68.69% Gravity::make_radial_gravity() 21 0.2956 0.3053 0.3178 9.01% check_for_negative_density() 10 0.01208 0.08809 0.1507 4.27% Castro::initData() 1 0.05663 0.09393 0.1444 4.10% Castro::estTimeStep() 21 0.02418 0.08346 0.1255 3.56% amrex::Copy() 193 0.06336 0.07679 0.08561 2.43% FabArray::ParallelCopy_finish() 41 0.04009 0.0535 0.08504 2.41% FabArray::setVal() 143 0.06222 0.06807 0.08029 2.28% Castro::reset_internal_energy(Fab) 1008 0.04242 0.04629 0.04989 1.41% Castro::normalize_species() 62 0.04093 0.04255 0.04488 1.27% FabArray::ParallelCopy_nowait() 41 0.03533 0.03933 0.04092 1.16% StateData::FillBoundary(geom) 41 0.02902 0.03188 0.03559 1.01% FillPatchIterator::Initialize 41 0.02805 0.03245 0.03441 0.98% Gravity::interpolate_monopole_grav() 21 0.0274 0.02908 0.03033 0.86% Castro::construct_new_gravity_source() 10 0.0227 0.02437 0.02727 0.77% Castro::computeTemp() 63 0.01769 0.0193 0.02059 0.58% Castro::initialize_do_advance() 10 0.01253 0.01715 0.01997 0.57% Amr::writePlotFile() 2 0.007835 0.01208 0.01346 0.38% FabArray::setDomainBndry() 41 0.009292 0.0116 0.0134 0.38% VisMF::Write(FabArray) 2 0.008866 0.009652 0.01282 0.36% FabArray::Saxpy() 20 0.0106 0.01166 0.01256 0.36% Castro::initialize_advance() 10 0.005582 0.009814 0.01245 0.35% MultiFab::contains_nan() 20 0.009473 0.01011 0.01082 0.31% Castro::construct_old_gravity_source() 10 0.006819 0.008887 0.009534 0.27% Castro::enforce_min_density() 62 0.007065 0.007328 0.007694 0.22% Castro::initMFs() 1 0.006424 0.007212 0.007552 0.21% StateData::define() 4 0.005643 0.006159 0.006626 0.19% Castro::construct_new_source() 50 0.005499 0.005831 0.006046 0.17% Gravity::get_new_grav_vector() 11 0.003495 0.003877 0.00567 0.16% Castro::swap_state_time_levels() 10 0.002041 0.003937 0.004562 0.13% main() 1 0.003629 0.003832 0.004228 0.12% Amr::coarseTimeStep() 10 0.001748 0.002829 0.004001 0.11% Gravity::get_old_grav_vector() 10 0.001579 0.002017 0.0023 0.07% Castro::buildMetrics() 1 0.001565 0.001659 0.001721 0.05% Castro::finalize_do_advance() 10 0.0003573 0.0009803 0.001483 0.04% AmrLevel::FillPatch() 41 0.000661 0.0008705 0.001177 0.03% Amr::InitAmr() 1 0.0003476 0.000406 0.0005762 0.02% Amr::timeStep() 10 0.0001527 0.000213 0.0004141 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002675 0.000287 0.0003091 0.01% DistributionMapping::LeastUsedCPUs() 1 2.921e-05 0.0002151 0.0002741 0.01% Castro::clean_state() 62 0.0001378 0.0001571 0.0001949 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001718 0.0001899 0.01% Castro::finalize_advance() 10 9.387e-05 0.0001063 0.0001253 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001009 0.000109 0.0001176 0.00% StateDataPhysBCFunct::() 41 9.327e-05 0.0001051 0.0001164 0.00% Castro::Castro() 1 8.078e-05 0.0001024 0.0001139 0.00% Castro::do_old_sources() 10 7.628e-05 8.641e-05 9.761e-05 0.00% Castro::enforce_consistent_e() 1 7.701e-05 8.658e-05 9.444e-05 0.00% FabArray::ParallelCopy() 41 7.6e-05 8.121e-05 8.837e-05 0.00% Castro::construct_old_source() 50 6.396e-05 7.686e-05 8.542e-05 0.00% Amr::FinalizeInit() 1 3.618e-06 1.411e-05 8.363e-05 0.00% FillPatchSingleLevel 41 6.757e-05 7.47e-05 7.997e-05 0.00% FabArrayBase::getCPC() 41 5.823e-05 6.451e-05 7.281e-05 0.00% Amr::writeSmallPlotFile() 1 4.042e-05 6.359e-05 7.166e-05 0.00% Castro::do_new_sources() 10 4.667e-05 5.863e-05 6.558e-05 0.00% Amr::defBaseLevel() 1 4.229e-05 4.897e-05 5.893e-05 0.00% Castro::subcycle_advance_ctu() 10 3.89e-05 4.843e-05 5.663e-05 0.00% Castro::advance() 10 4.067e-05 4.624e-05 5.388e-05 0.00% Castro::apply_source_to_state() 20 3.822e-05 4.259e-05 4.699e-05 0.00% Castro::construct_old_gravity() 10 3.156e-05 3.764e-05 4.391e-05 0.00% Castro::construct_new_gravity() 10 2.911e-05 3.38e-05 3.806e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.515e-05 3.012e-05 0.00% Castro::enforce_speed_limit() 62 2.325e-05 2.714e-05 2.924e-05 0.00% Castro::expand_state() 10 1.973e-05 2.498e-05 2.765e-05 0.00% Castro::check_for_nan() 20 1.954e-05 2.358e-05 2.548e-05 0.00% Gravity::set_mass_offset() 10 1.12e-05 1.483e-05 1.919e-05 0.00% Castro::post_timestep() 10 1.359e-05 1.528e-05 1.655e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.784e-06 1.167e-05 1.38e-05 0.00% Amr::initSubcycle() 1 1.115e-05 1.175e-05 1.25e-05 0.00% Castro::post_init() 1 7.474e-06 9.16e-06 1.218e-05 0.00% Castro::computeNewDt() 9 7.404e-06 9.212e-06 1.152e-05 0.00% Gravity::swapTimeLevels() 10 6.091e-06 8.613e-06 1.094e-05 0.00% Castro::create_source_corrector() 10 7.697e-06 9.009e-06 1.011e-05 0.00% Castro::retry_advance_ctu() 10 6.175e-06 7.507e-06 9.031e-06 0.00% Castro::FluxRegCrseInit 10 7.238e-06 7.908e-06 9.001e-06 0.00% Amr::InitializeInit() 1 2.964e-06 3.651e-06 6.177e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.843e-06 4.405e-06 5.975e-06 0.00% Castro::post_regrid() 1 2.873e-06 3.702e-06 5.108e-06 0.00% Castro::computeInitialDt() 2 3.327e-06 3.882e-06 4.787e-06 0.00% Castro::FluxRegFineAdd() 10 2.057e-06 2.354e-06 2.6e-06 0.00% Amr::initialInit() 1 1.22e-06 1.779e-06 2.529e-06 0.00% Amr::init() 1 1.547e-06 1.955e-06 2.301e-06 0.00% DistributionMapping::Distribute() 1 1.123e-06 1.306e-06 1.842e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.526 3.526 3.526 100.00% Amr::coarseTimeStep() 10 3.3 3.3 3.3 93.58% Amr::timeStep() 10 3.286 3.287 3.288 93.24% Castro::advance() 10 3.27 3.271 3.272 92.79% Castro::subcycle_advance_ctu() 10 3.19 3.199 3.208 90.97% Castro::do_advance_ctu() 10 3.19 3.199 3.208 90.97% Castro::construct_ctu_hydro_source() 10 2.457 2.46 2.466 69.94% Gravity::make_radial_gravity() 21 0.3111 0.3213 0.3319 9.41% Gravity::get_new_grav_vector() 11 0.2119 0.2145 0.2159 6.12% Amr::init() 1 0.2132 0.2134 0.2135 6.05% AmrLevel::FillPatch() 41 0.1794 0.2006 0.2121 6.01% Castro::construct_old_gravity() 10 0.1858 0.1907 0.2001 5.68% Gravity::get_old_grav_vector() 10 0.1851 0.19 0.1995 5.66% Amr::initialInit() 1 0.1964 0.1971 0.1982 5.62% Castro::construct_new_gravity() 10 0.1861 0.1886 0.1902 5.39% FillPatchIterator::Initialize 41 0.1508 0.1692 0.1879 5.33% Castro::initialize_do_advance() 10 0.1551 0.1681 0.1729 4.90% Amr::InitializeInit() 1 0.07858 0.1156 0.1671 4.74% Amr::defBaseLevel() 1 0.07858 0.1156 0.1671 4.74% check_for_negative_density() 10 0.01208 0.08809 0.1507 4.27% FillPatchIterator::FillFromLevel0() 41 0.1124 0.1252 0.1499 4.25% FillPatchSingleLevel 41 0.1123 0.1251 0.1498 4.25% Castro::initData() 1 0.06023 0.09787 0.1484 4.21% Castro::estTimeStep() 21 0.02418 0.08346 0.1255 3.56% Castro::clean_state() 62 0.108 0.115 0.1214 3.44% FabArray::ParallelCopy() 41 0.08022 0.093 0.1206 3.42% Castro::expand_state() 10 0.1011 0.1149 0.1202 3.41% Amr::FinalizeInit() 1 0.03053 0.08146 0.1179 3.34% Castro::do_old_sources() 10 0.08613 0.09107 0.09406 2.67% Castro::computeInitialDt() 2 0.002614 0.05404 0.09113 2.58% amrex::Copy() 193 0.06336 0.07679 0.08561 2.43% FabArray::ParallelCopy_finish() 41 0.04009 0.0535 0.08504 2.41% FabArray::setVal() 143 0.06222 0.06807 0.08029 2.28% Castro::initialize_advance() 10 0.05892 0.06826 0.0778 2.21% Castro::do_new_sources() 10 0.05935 0.0642 0.07155 2.03% Castro::computeTemp() 63 0.06052 0.06587 0.07079 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04269 0.04657 0.0502 1.42% Castro::reset_internal_energy(Fab) 1008 0.04242 0.04629 0.04989 1.41% Castro::normalize_species() 62 0.04093 0.04255 0.04488 1.27% FabArray::ParallelCopy_nowait() 41 0.03543 0.03942 0.041 1.16% StateDataPhysBCFunct::() 41 0.02912 0.03199 0.0357 1.01% StateData::FillBoundary(geom) 41 0.02902 0.03188 0.03559 1.01% Castro::construct_new_source() 50 0.02845 0.0302 0.03306 0.94% Gravity::interpolate_monopole_grav() 21 0.0274 0.02908 0.03033 0.86% Castro::post_init() 1 0.02648 0.02708 0.02834 0.80% Castro::construct_new_gravity_source() 10 0.0227 0.02437 0.02727 0.77% Castro::finalize_do_advance() 10 0.01343 0.02124 0.02653 0.75% Amr::writePlotFile() 2 0.02311 0.02445 0.02515 0.71% Castro::post_timestep() 10 0.01473 0.01559 0.01656 0.47% FabArray::setDomainBndry() 41 0.009292 0.0116 0.0134 0.38% VisMF::Write(FabArray) 2 0.008866 0.009652 0.01282 0.36% Castro::apply_source_to_state() 20 0.01065 0.0117 0.0126 0.36% FabArray::Saxpy() 20 0.0106 0.01166 0.01256 0.36% Castro::Castro() 1 0.009868 0.01132 0.01199 0.34% Castro::check_for_nan() 20 0.009495 0.01014 0.01085 0.31% MultiFab::contains_nan() 20 0.009473 0.01011 0.01082 0.31% Castro::construct_old_source() 50 0.006883 0.008964 0.009615 0.27% Castro::construct_old_gravity_source() 10 0.006819 0.008887 0.009534 0.27% Castro::computeNewDt() 9 0.009163 0.009176 0.009199 0.26% Castro::enforce_min_density() 62 0.007065 0.007328 0.007694 0.22% Castro::initMFs() 1 0.006424 0.007212 0.007552 0.21% AmrLevel::AmrLevel(dm) 1 0.005653 0.006171 0.006639 0.19% StateData::define() 4 0.005643 0.006159 0.006626 0.19% Castro::swap_state_time_levels() 10 0.002041 0.003937 0.004562 0.13% Castro::finalize_advance() 10 0.002969 0.003374 0.004041 0.11% Castro::buildMetrics() 1 0.001686 0.001802 0.001873 0.05% Castro::post_regrid() 1 0.001506 0.001597 0.001787 0.05% Amr::InitAmr() 1 0.0003588 0.0004178 0.0005882 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 3.453e-05 0.0002208 0.0002819 0.01% DistributionMapping::LeastUsedCPUs() 1 2.921e-05 0.0002151 0.0002741 0.01% FabArrayBase::getCPC() 41 8.118e-05 8.966e-05 0.0001019 0.00% Castro::enforce_consistent_e() 1 7.701e-05 8.658e-05 9.444e-05 0.00% Amr::writeSmallPlotFile() 1 4.042e-05 6.359e-05 7.166e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.515e-05 3.012e-05 0.00% Castro::enforce_speed_limit() 62 2.325e-05 2.714e-05 2.924e-05 0.00% Gravity::set_mass_offset() 10 1.12e-05 1.483e-05 1.919e-05 0.00% Amr::initSubcycle() 1 1.115e-05 1.175e-05 1.25e-05 0.00% Gravity::swapTimeLevels() 10 6.091e-06 8.613e-06 1.094e-05 0.00% Castro::create_source_corrector() 10 7.697e-06 9.009e-06 1.011e-05 0.00% Castro::retry_advance_ctu() 10 6.175e-06 7.507e-06 9.031e-06 0.00% Castro::FluxRegCrseInit 10 7.238e-06 7.908e-06 9.001e-06 0.00% Castro::FluxRegFineAdd() 10 2.057e-06 2.354e-06 2.6e-06 0.00% DistributionMapping::Distribute() 1 1.123e-06 1.306e-06 1.842e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 39 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (24.04-15-g7813bb7d6bc6) finalized